Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015046

Physical Location & Seq

Genomic Coordinates Reverse (-)

17700766 .. 17704458

Gene Structure 3693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G232600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGTGGATGATGGGTTATAACGAGAGTGGCCATGCTGATTTCAACATGCCTGATTCTTTCAACGGTCGGAAGCTTCGGCCTCTCATTCCACGGCCACTCGTGCCATCTGCTAACAACGCCACTTCTTCAGTCATTGCTGCAACTCCTCCTTGTTTAAACCGAATTCATGGCGTCTCTCATGATTTCTTCACTCAGTATCACCATCTCGCCGCTATGGCTGAACAAAACAAGAGATCAGAGTTCATCAACACACCGCAAGTGGTGGTGAGCTCAAGATGGAACCCAACTCCGGAGCAGTTGAGGGCTCTGGAAGAATTGTACAGACGAGGGACTCGAACCCCGTCGGCTGAGCAAATTCAGCACATCACAGCGCAGCTTCGAAAATATGGAAAGATAGAGGGGAAGAATGTGTTCTATTGGTTCCAAAATCATAAGGCCAGAGAAAGACAGAAACGTCGCCGTCAGATGGAATCATCCGTGCCCTCTGCCCAACCAGATCACGAAATATCATTGTCATCCACAGATAATCAAAAGAAAGAATCATTAGGGGCAAGTAGGACAGGGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTGCTACTCTTGCAGAGGAATCTGTTTCAATACAAAGGGCAGCAAAAGCAGCAGTGGCAGCAGCAGAGTGCAGGACGGATGGATGGATCCAATTCGATGAAGAAGAATTGCAGCAAAGAAGGAACTTTGTAGAAAGGAATGCCACGTGGCAGATGATGCAGTTGTCTTGTCCTCCTCCTCCTTCTCCTCTTCCTCCTCAGTACCCTCATCCTCCCACCCACCTCATAATAAACACCCCTGCTTGTTCTACTGCTAACTCAAATAGTACTAATAATTTAACAAGCAGCAGGGCAAGCAGGGCAGCAACAGTTAGAACAATGGACCAAAGGCTCATTAAGGGTCATGATCTCAGCATCCTTCTAACACCCTACTCATCAATATCAGAAGAATCTGGTTTTATTAACTTTAACTACCCAAACCACAACACCAGCGTTGAACAGGATCATGGCTGTGGGGAATCTCAAACCCTTCAACTCTTTCCACTTCGAAGTGGCCATGCCAATGCCAATGCCAACCTCGAAAAGGATCATGCAGAGCTATCGGCTAACTTCAGTAGAGCTCAGCCTTACCCTTTTTTTGAGTTTCTTCCCTTAAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

404

Amino Acids

45.44

Weight (kDa)

8.48

Isoelectric Point (pI)

59.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18010
fragaria_vesca	FvH4_5g17270
malus_domestica	MD06G1231300.v1.1 MD14G1235800.v1.1
prunus_persica	Prupe.5G232600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0178511
rosa_laevigata	RLG00000005441
rosa_multiflora	Rmu_sc0002421.1_g000001 Rmu_sc0016060.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274850
rosa_rugosa	Rorug06G0417700
rosa_samantha	Rh7AG016200 Rh7BG015700 Rh7CG016400 Rh7DG016300
rosa_wichuraiana	Rw7G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AasI	GACNNNNNNGTC	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	592
AccB7I	CCANNNNNTGG	1 cut(s)	588
AccIII	TCCGGA	1 cut(s)	289
AciI	CCGC	2 cut(s)	210, 254
AclWI	GGATC	4 cut(s)	691, 704, 1059, 1143
AcoI	YGGCCR	3 cut(s)	28, 92, 1102
AcsI	RAATTY	2 cut(s)	162, 354
AcuI	CTGAAG	2 cut(s)	111, 1144
AcvI	CACGTG	1 cut(s)	756
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	3 cut(s)	320, 812, 877
AfiI	CCNNNNNNNGG	4 cut(s)	289, 466, 588, 1132
AgsI	TTSAA	7 cut(s)	43, 61, 569, 575, 639, 1046, 1082
AluBI	AGCT	5 cut(s)	73, 270, 376, 1147, 1169
AluI	AGCT	5 cut(s)	73, 270, 376, 1147, 1169
Alw21I	GWGCWC	2 cut(s)	272, 1171
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	4 cut(s)	691, 704, 1059, 1143
Aor13HI	TCCGGA	1 cut(s)	289
AoxI	GGCC	5 cut(s)	28, 77, 92, 435, 1102
ApeKI	GCWGC	9 cut(s)	137, 373, 650, 659, 668, 671, 721, 894, 911
ApoI	RAATTY	2 cut(s)	162, 354
Asp700I	GAANNNNTTC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	1 cut(s)	931
AsuHPI	GGTGA	2 cut(s)	191, 277
AsuII	TTCGAA	2 cut(s)	379, 1096
AvaII	GGWCC	1 cut(s)	931
BaeGI	GKGCMC	2 cut(s)	483, 595
BalI	TGGCCA	2 cut(s)	30, 1104
BamHI	GGATCC	1 cut(s)	696
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	3 cut(s)	272, 307, 1171
BauI	CACGAG	1 cut(s)	98
BbrPI	CACGTG	1 cut(s)	756
Bbv12I	GWGCWC	2 cut(s)	272, 1171
BbvI	GCAGC	9 cut(s)	124, 385, 662, 671, 680, 683, 733, 906, 923
BccI	CCATC	7 cut(s)	4, 112, 210, 270, 460, 683, 687
BceAI	ACGGC	2 cut(s)	107, 444
BcgI	CGANNNNNNTGC	2 cut(s)	1131, 1165
BcoDI	GTCTC	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	607
BglI	GCCNNNNNGGC	1 cut(s)	215
BlpI	GCTNAGC	2 cut(s)	348, 1170
BmcAI	AGTACT	1 cut(s)	877
Bme18I	GGWCC	1 cut(s)	931
BmgT120I	GGNCC	1 cut(s)	931
BmiI	GGNNCC	4 cut(s)	281, 422, 594, 698
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	2 cut(s)	756, 972
BmuI	ACTGGG	1 cut(s)	598
Bpu1102I	GCTNAGC	2 cut(s)	348, 1170
Bpu14I	TTCGAA	2 cut(s)	379, 1096
BpuEI	CTTGAG	1 cut(s)	256
BsaAI	YACGTR	1 cut(s)	756
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 466, 588, 1132
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	7 cut(s)	12, 473, 515, 694, 698, 817, 963
BseLI	CCNNNNNNNGG	4 cut(s)	289, 466, 588, 1132
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	5 cut(s)	206, 339, 821, 973, 1184
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	5 cut(s)	135, 774, 777, 786, 795
BseSI	GKGCMC	2 cut(s)	483, 595
BseXI	GCAGC	9 cut(s)	124, 385, 662, 671, 680, 683, 733, 906, 923
BsgI	GTGCAG	1 cut(s)	700
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	5 cut(s)	30, 79, 94, 437, 1104
BshNI	GGYRCC	1 cut(s)	592
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	2 cut(s)	272, 1171
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	4 cut(s)	289, 466, 588, 1132
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	5 cut(s)	30, 79, 94, 437, 1104
Bsp119I	TTCGAA	2 cut(s)	379, 1096
Bsp1286I	GDGCHC	5 cut(s)	272, 307, 483, 595, 1171
Bsp13I	TCCGGA	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	6 cut(s)	233, 496, 696, 955, 1051, 1135
Bsp1720I	GCTNAGC	2 cut(s)	348, 1170
BspACI	CCGC	2 cut(s)	210, 254
BspANI	GGCC	5 cut(s)	30, 79, 94, 437, 1104
BspCNI	CTCAG	5 cut(s)	205, 340, 820, 972, 1183
BspEI	TCCGGA	1 cut(s)	289
BspHI	TCATGA	2 cut(s)	178, 952
BspLI	GGNNCC	4 cut(s)	281, 422, 594, 698
BspMAI	CTGCAG	1 cut(s)	611
BspPI	GGATC	4 cut(s)	691, 704, 1059, 1143
BspT104I	TTCGAA	2 cut(s)	379, 1096
BspT107I	GGYRCC	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	132
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	6 cut(s)	233, 496, 696, 955, 1051, 1135
BssNI	GRCGYC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	65, 919
Bst6I	CTCTTC	1 cut(s)	804
BstACI	GRCGYC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	766
BstAUI	TGTACA	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	756
BstBI	TTCGAA	2 cut(s)	379, 1096
BstC8I	GCNNGC	1 cut(s)	904
BstDEI	CTNAG	5 cut(s)	192, 348, 807, 959, 1170
BstDSI	CCRYGG	1 cut(s)	89
BstENI	CCTNNNNNAGG	1 cut(s)	1130
BstF5I	GGATG	7 cut(s)	12, 473, 515, 694, 698, 817, 963
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	6 cut(s)	236, 499, 699, 958, 1054, 1138
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	6 cut(s)	233, 496, 696, 955, 1051, 1135
BstMCI	CGRYCG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	607
BstSLI	GKGCMC	2 cut(s)	483, 595
BstV1I	GCAGC	9 cut(s)	124, 385, 662, 671, 680, 683, 733, 906, 923
BstX2I	RGATCY	1 cut(s)	696
BstYI	RGATCY	1 cut(s)	696
BsuRI	GGCC	5 cut(s)	30, 79, 94, 437, 1104
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	7 cut(s)	12, 473, 515, 694, 698, 817, 963
BtsI	GCAGTG	2 cut(s)	616, 669
BtsIMutI	CAGTG	2 cut(s)	616, 669
Cac8I	GCNNGC	1 cut(s)	904
CciI	TCATGA	2 cut(s)	178, 952
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	931
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	319, 811, 876
CviAII	CATG	8 cut(s)	32, 46, 167, 179, 953, 1055, 1106, 1139
CviQI	GTAC	3 cut(s)	319, 811, 876
DdeI	CTNAG	5 cut(s)	192, 348, 807, 959, 1170
DpnI	GATC	6 cut(s)	235, 498, 698, 957, 1053, 1137
DpnII	GATC	6 cut(s)	233, 496, 696, 955, 1051, 1135
DraI	TTTAAA	1 cut(s)	156
DrdI	GACNNNNNNGTC	1 cut(s)	453
DseDI	GACNNNNNNGTC	1 cut(s)	453
EaeI	YGGCCR	3 cut(s)	28, 92, 1102
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Ecl136II	GAGCTC	2 cut(s)	270, 1169
Eco24I	GRGCYC	3 cut(s)	272, 307, 1171
Eco47I	GGWCC	1 cut(s)	931
Eco53kI	GAGCTC	2 cut(s)	270, 1169
Eco57I	CTGAAG	2 cut(s)	111, 1144
Eco72I	CACGTG	1 cut(s)	756
EcoICRI	GAGCTC	2 cut(s)	270, 1169
EcoNI	CCTNNNNNAGG	1 cut(s)	1130
EcoRI	GAATTC	1 cut(s)	162
EcoT38I	GRGCYC	3 cut(s)	272, 307, 1171
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	8 cut(s)	35, 49, 170, 182, 956, 1058, 1109, 1142
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	8 cut(s)	31, 45, 166, 178, 952, 1054, 1105, 1138
FokI	GGATG	7 cut(s)	19, 460, 502, 701, 705, 804, 950
FriOI	GRGCYC	3 cut(s)	272, 307, 1171
GlaI	GCGC	1 cut(s)	372
HaeIII	GGCC	5 cut(s)	30, 79, 94, 437, 1104
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	373
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	8 cut(s)	35, 49, 170, 182, 956, 1058, 1109, 1142
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	7 cut(s)	53, 331, 470, 539, 629, 998, 1067
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	191, 277
Hpy188I	TCNGA	4 cut(s)	69, 238, 465, 994
Hpy188III	TCNNGA	6 cut(s)	179, 273, 290, 308, 500, 953
Hpy99I	CGWCG	2 cut(s)	346, 459
HpyAV	CCTTC	4 cut(s)	723, 801, 977, 1088
HpyCH4III	ACNGT	2 cut(s)	65, 919
HpyCH4IV	ACGT	2 cut(s)	454, 755
HpyCH4V	TGCA	7 cut(s)	140, 609, 623, 681, 721, 769, 1142
HpyF3I	CTNAG	5 cut(s)	192, 348, 807, 959, 1170
HpySE526I	ACGT	2 cut(s)	454, 755
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	8 cut(s)	35, 49, 170, 182, 956, 1058, 1109, 1142
HspAI	GCGC	1 cut(s)	371
Kpn2I	TCCGGA	1 cut(s)	289
Kzo9I	GATC	6 cut(s)	233, 496, 696, 955, 1051, 1135
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	9 cut(s)	124, 385, 662, 671, 680, 683, 733, 906, 923
LweI	GCATC	2 cut(s)	756, 972
MaeII	ACGT	2 cut(s)	454, 755
MalI	GATC	6 cut(s)	235, 498, 698, 957, 1053, 1137
MboI	GATC	6 cut(s)	233, 496, 696, 955, 1051, 1135
MboII	GAAGA	9 cut(s)	117, 178, 323, 415, 722, 725, 791, 1007, 1187
MflI	RGATCY	1 cut(s)	696
MhlI	GDGCHC	5 cut(s)	272, 307, 483, 595, 1171
MlsI	TGGCCA	2 cut(s)	30, 1104
MluCI	AATT	6 cut(s)	162, 314, 354, 701, 716, 883
MluNI	TGGCCA	2 cut(s)	30, 1104
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	47
Mox20I	TGGCCA	2 cut(s)	30, 1104
MroI	TCCGGA	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	410
MscI	TGGCCA	2 cut(s)	30, 1104
MseI	TTAA	6 cut(s)	155, 887, 945, 1011, 1017, 1202
MslI	CAYNNNNRTG	2 cut(s)	1059, 1110
Msp20I	TGGCCA	2 cut(s)	30, 1104
MspI	CCGG	1 cut(s)	290
MssI	GTTTAAAC	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	754
NdeII	GATC	6 cut(s)	233, 496, 696, 955, 1051, 1135
NlaIII	CATG	8 cut(s)	35, 49, 170, 182, 956, 1058, 1109, 1142
NlaIV	GGNNCC	4 cut(s)	281, 422, 594, 698
NspI	RCATGY	1 cut(s)	49
NspV	TTCGAA	2 cut(s)	379, 1096
PagI	TCATGA	2 cut(s)	178, 952
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PctI	GAATGC	1 cut(s)	754
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	6 cut(s)	53, 470, 539, 629, 998, 1067
PflMI	CCANNNNNTGG	1 cut(s)	588
PleI	GAGTC	1 cut(s)	325
PmaCI	CACGTG	1 cut(s)	756
PmeI	GTTTAAAC	1 cut(s)	156
PmlI	CACGTG	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	756
PsiI	TTATAA	1 cut(s)	18
Psp124BI	GAGCTC	2 cut(s)	272, 1171
PspCI	CACGTG	1 cut(s)	756
PspN4I	GGNNCC	4 cut(s)	281, 422, 594, 698
PspPI	GGNCC	1 cut(s)	931
PstI	CTGCAG	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	696
RsaI	GTAC	3 cut(s)	320, 812, 877
RsaNI	GTAC	3 cut(s)	319, 811, 876
RseI	CAYNNNNRTG	2 cut(s)	1059, 1110
SacI	GAGCTC	2 cut(s)	272, 1171
SaqAI	TTAA	6 cut(s)	155, 887, 945, 1011, 1017, 1202
Sau3AI	GATC	6 cut(s)	233, 496, 696, 955, 1051, 1135
Sau96I	GGNCC	1 cut(s)	931
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	1 cut(s)	325
SduI	GDGCHC	5 cut(s)	272, 307, 483, 595, 1171
SetI	ASST	9 cut(s)	75, 272, 378, 457, 758, 834, 1128, 1149, 1171
SfaNI	GCATC	2 cut(s)	756, 972
SfcI	CTRYAG	1 cut(s)	607
SfuI	TTCGAA	2 cut(s)	379, 1096
SinI	GGWCC	1 cut(s)	931
SmiMI	CAYNNNNRTG	2 cut(s)	1059, 1110
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	6 cut(s)	162, 314, 354, 701, 716, 883
SsiI	CCGC	2 cut(s)	210, 254
SstI	GAGCTC	2 cut(s)	272, 1171
TaaI	ACNGT	2 cut(s)	65, 919
TaiI	ACGT	2 cut(s)	457, 758
TaqI	TCGA	5 cut(s)	334, 379, 705, 1096, 1128
TasI	AATT	6 cut(s)	162, 314, 354, 701, 716, 883
TatI	WGTACW	2 cut(s)	318, 875
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	6 cut(s)	53, 470, 539, 629, 998, 1067
Tru1I	TTAA	6 cut(s)	155, 887, 945, 1011, 1017, 1202
Tru9I	TTAA	6 cut(s)	155, 887, 945, 1011, 1017, 1202
TscAI	CASTG	2 cut(s)	616, 669
TseI	GCWGC	9 cut(s)	137, 373, 650, 659, 668, 671, 721, 894, 911
TspDTI	ATGAA	3 cut(s)	155, 232, 723
TspGWI	ACGGA	2 cut(s)	466, 701
TspRI	CASTG	2 cut(s)	616, 669
Van91I	CCANNNNNTGG	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	931
XagI	CCTNNNNNAGG	1 cut(s)	1130
XapI	RAATTY	2 cut(s)	162, 354
XceI	RCATGY	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.