Rh7CG016400

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015046
Physical Location & Seq
Reverse (-)
1235884 .. 1238095
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG016400.1

Sequence Viewer

Length: 984 bp
ATGTGGATGATGGGTTACAACGATGGTGGTGACATCAACATGATTCCGGATTCAGCCTTCAACGGTCGGAAGCTTCGGCCTCTCGTTCCTAGGCCTCTGTTATCTCCTCATAACAACAACAACAACACTTCAACAAGTACACATGCTCCACCTTGTTTCAGTCGAATTCATGCTGCGTCTGATTTCTTAGCACAATATCACCAGCTGGGTGAACAAAGAGGGATGAGAGAGTTCAATACGGTGCCGCAGGTTGTGGCAAGAGAGAGACAGAAACGCCGTCGCCAGATGGAATCTCACGACGACCTTCAACTCATGTGTTCAGATCACCAAAAGAAGGAATCATTAGGCGGGGCAAGTAGGACAGTGTATGAAGTTGAAGAGACCAAGAATTGGGCACCCTCTGCAAACTGCATGACTACTAGTCTCCAAGATCAGCTTCATCATCAACAGGAAACAGTAAAAGCAGGAGCAGAAAGCAGGACGGAAGGATGGGTCCAATTCGGTGAGGAAGAATTGCAGCAACTTCAACAAGAGCAAAGAAGGAATTCCATGACTGTAGAAAAGAATGCCAGGTGGCAGATGATGCAGTTGTCTTGTCCTCCTCCTCCTCGTCTTCATGACCTCACCCACCTCATAAACGCCCCCACTTGTACCAGAACGACAGTAAGAACAATGGAGATGGACCAAAAGCAGCTCATTAATAACCGTAATAATAAGACTAGTCCTCCTCATGATCTCAGCATCTTTATAGCTCCCTACAGGTCTGGCGCTGCCCTTAACGGTCGCCATCTCGAACAAAACCAACACCGTAACGAAGAAGATATTTCACGTGGAGATCAGTCTCAAACCCTCCAGCTATTTCCGCTTAGGAGTAGTACTTGCGGCGAAAAAGATCATCTTACAACCGAGAAATCCTTGCTAAACCCTAGTTTCGGCACTGGCCCTAATTACCAGTTTTTTGAGTTCCTCCCATTGAAGAACTGA

Protein Analysis

327

Amino Acids

37.53

Weight (kDa)

7.24

Isoelectric Point (pI)

59.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18010
fragaria_vesca FvH4_5g17270
malus_domestica MD06G1231300.v1.1 MD14G1235800.v1.1
prunus_persica Prupe.5G232600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178511
rosa_laevigata RLG00000005441
rosa_multiflora Rmu_sc0002421.1_g000001 Rmu_sc0016060.1_g000002
rosa_roxburghii Rroxscaffold_3G00274850
rosa_rugosa Rorug06G0417700
rosa_samantha Rh7AG016200 Rh7BG015700 Rh7CG016400 Rh7DG016300
rosa_wichuraiana Rw7G001280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccB1I GGYRCC 2 cut(s) 241, 394
AccB7I CCANNNNNTGG 1 cut(s) 390
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 4 cut(s) 245, 348, 863, 882
AcsI RAATTY 2 cut(s) 165, 544
AcvI CACGTG 1 cut(s) 830
AfaI GTAC 3 cut(s) 139, 652, 877
AfiI CCNNNNNNNGG 3 cut(s) 334, 390, 932
AgsI TTSAA 7 cut(s) 61, 132, 235, 308, 377, 527, 976
AhdI GACNNNNNGTC 1 cut(s) 420
AhlI ACTAGT 2 cut(s) 419, 719
AjnI CCWGG 1 cut(s) 569
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AluBI AGCT 6 cut(s) 73, 205, 436, 694, 752, 856
AluI AGCT 6 cut(s) 73, 205, 436, 694, 752, 856
Alw26I GTCTC 4 cut(s) 259, 374, 428, 846
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 3 cut(s) 77, 92, 940
ApeKI GCWGC 4 cut(s) 173, 517, 691, 770
ApoI RAATTY 2 cut(s) 165, 544
AseI ATTAAT 1 cut(s) 699
Asp700I GAANNNNTTC 1 cut(s) 544
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 1 cut(s) 770
AspS9I GGNCC 3 cut(s) 493, 682, 941
AsuHPI GGTGA 6 cut(s) 41, 191, 221, 317, 515, 616
AvaII GGWCC 2 cut(s) 493, 682
AvrII CCTAGG 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 397
BanI GGYRCC 2 cut(s) 241, 394
BbrPI CACGTG 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 4 cut(s) 160, 529, 703, 757
BccI CCATC 6 cut(s) 4, 17, 280, 483, 673, 795
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 571
BcoDI GTCTC 4 cut(s) 259, 374, 428, 846
BcuI ACTAGT 2 cut(s) 419, 719
BfaI CTAG 4 cut(s) 90, 420, 720, 927
BfmI CTRYAG 2 cut(s) 555, 757
BfoI RGCGCY 1 cut(s) 771
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 6 cut(s) 174, 245, 518, 692, 771, 883
BlnI CCTAGG 1 cut(s) 89
BlsI GCNGC 6 cut(s) 175, 246, 519, 693, 772, 884
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 2 cut(s) 493, 682
BmeRI GACNNNNNGTC 1 cut(s) 420
BmgT120I GGNCC 3 cut(s) 493, 682, 941
BmiI GGNNCC 3 cut(s) 243, 396, 494
BmrFI CCNGG 1 cut(s) 571
BmsI GCATC 2 cut(s) 573, 750
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 836
Bpu10I CCTNAGC 1 cut(s) 866
BsaAI YACGTR 1 cut(s) 830
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 709, 739
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 390, 932
Bse1I ACTGG 2 cut(s) 943, 952
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 3 cut(s) 12, 228, 494
BseLI CCNNNNNNNGG 3 cut(s) 334, 390, 932
BseMII CTCAG 1 cut(s) 751
BseNI ACTGG 2 cut(s) 943, 952
BseRI GAGGAG 5 cut(s) 96, 591, 594, 597, 717
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 4 cut(s) 160, 529, 703, 757
BseYI CCCAGC 1 cut(s) 205
Bsh1285I CGRYCG 2 cut(s) 67, 784
BshFI GGCC 3 cut(s) 79, 94, 942
BshNI GGYRCC 2 cut(s) 241, 394
BsiEI CGRYCG 2 cut(s) 67, 784
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 334, 390, 932
BsmAI GTCTC 4 cut(s) 259, 374, 428, 846
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 3 cut(s) 79, 94, 942
Bso31I GGTCTC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 397
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 5 cut(s) 322, 430, 733, 835, 892
BspACI CCGC 4 cut(s) 245, 348, 863, 882
BspANI GGCC 3 cut(s) 79, 94, 942
BspCNI CTCAG 1 cut(s) 750
BspEI TCCGGA 1 cut(s) 46
BspHI TCATGA 2 cut(s) 616, 730
BspLI GGNNCC 3 cut(s) 243, 396, 494
BspMI ACCTGC 1 cut(s) 238
BspT107I GGYRCC 2 cut(s) 241, 394
BspTNI GGTCTC 1 cut(s) 374
BsrI ACTGG 2 cut(s) 943, 952
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 5 cut(s) 322, 430, 733, 835, 892
BssT1I CCWWGG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 9 cut(s) 65, 241, 364, 457, 556, 664, 707, 782, 809
Bst6I CTCTTC 1 cut(s) 372
BstAPI GCANNNNNTGC 2 cut(s) 401, 583
BstBAI YACGTR 1 cut(s) 830
BstDEI CTNAG 3 cut(s) 187, 737, 866
BstF5I GGATG 3 cut(s) 12, 228, 494
BstH2I RGCGCY 1 cut(s) 771
BstHHI GCGC 1 cut(s) 770
BstKTI GATC 5 cut(s) 325, 433, 736, 838, 895
BstMAI GTCTC 4 cut(s) 259, 374, 428, 846
BstMBI GATC 5 cut(s) 322, 430, 733, 835, 892
BstMCI CGRYCG 2 cut(s) 67, 784
BstMWI GCNNNNNNNGC 3 cut(s) 401, 583, 862
BstNI CCWGG 1 cut(s) 571
BstNSI RCATGY 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 569
BstSFI CTRYAG 2 cut(s) 555, 757
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 4 cut(s) 160, 529, 703, 757
BstV2I GAAGAC 1 cut(s) 605
BsuRI GGCC 3 cut(s) 79, 94, 942
BtsCI GGATG 3 cut(s) 12, 228, 494
BtsIMutI CAGTG 2 cut(s) 369, 936
BveI ACCTGC 1 cut(s) 238
CciI TCATGA 2 cut(s) 616, 730
CfoI GCGC 1 cut(s) 770
Cfr13I GGNCC 3 cut(s) 493, 682, 941
CseI GACGC 1 cut(s) 165
Csp6I GTAC 3 cut(s) 138, 651, 876
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 8 cut(s) 40, 143, 170, 313, 412, 550, 617, 731
CviQI GTAC 3 cut(s) 138, 651, 876
DdeI CTNAG 3 cut(s) 187, 737, 866
DpnI GATC 5 cut(s) 324, 432, 735, 837, 894
DpnII GATC 5 cut(s) 322, 430, 733, 835, 892
DriI GACNNNNNGTC 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 372
Eam1105I GACNNNNNGTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 2 cut(s) 493, 682
Eco72I CACGTG 1 cut(s) 830
EcoRI GAATTC 2 cut(s) 165, 544
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 8 cut(s) 43, 146, 173, 316, 415, 553, 620, 734
FalI AAGNNNNNCTT 4 cut(s) 420, 452, 882, 914
FatI CATG 8 cut(s) 39, 142, 169, 312, 411, 549, 616, 730
FauI CCCGC 1 cut(s) 341
Fnu4HI GCNGC 6 cut(s) 174, 245, 518, 692, 771, 883
FokI GGATG 3 cut(s) 19, 235, 501
Fsp4HI GCNGC 6 cut(s) 174, 245, 518, 692, 771, 883
FspBI CTAG 4 cut(s) 90, 420, 720, 927
GlaI GCGC 1 cut(s) 769
GluI GCNGC 6 cut(s) 174, 245, 518, 692, 771, 883
GsaI CCCAGC 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 836
HaeII RGCGCY 1 cut(s) 771
HaeIII GGCC 3 cut(s) 79, 94, 942
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 165
HhaI GCGC 1 cut(s) 770
Hin1II CATG 8 cut(s) 43, 146, 173, 316, 415, 553, 620, 734
Hin6I GCGC 1 cut(s) 768
HinP1I GCGC 1 cut(s) 768
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 4 cut(s) 43, 50, 290, 338
HpaII CCGG 1 cut(s) 47
HphI GGTGA 6 cut(s) 41, 191, 221, 317, 515, 616
Hpy166II GTNNAC 2 cut(s) 140, 212
Hpy188I TCNGA 3 cut(s) 69, 181, 322
Hpy188III TCNNGA 5 cut(s) 47, 296, 617, 731, 791
Hpy8I GTNNAC 2 cut(s) 140, 212
Hpy99I CGWCG 2 cut(s) 282, 302
HpyAV CCTTC 5 cut(s) 67, 314, 328, 479, 534
HpyCH4III ACNGT 9 cut(s) 65, 241, 364, 457, 556, 664, 707, 782, 809
HpyCH4IV ACGT 1 cut(s) 829
HpyCH4V TGCA 4 cut(s) 404, 411, 517, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 583, 862
HpyF3I CTNAG 3 cut(s) 187, 737, 866
HpySE526I ACGT 1 cut(s) 829
Hsp92II CATG 8 cut(s) 43, 146, 173, 316, 415, 553, 620, 734
HspAI GCGC 1 cut(s) 768
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 5 cut(s) 322, 430, 733, 835, 892
LmnI GCTCC 3 cut(s) 151, 467, 757
Lsp1109I GCAGC 4 cut(s) 160, 529, 703, 757
LweI GCATC 2 cut(s) 573, 750
MaeI CTAG 4 cut(s) 90, 420, 720, 927
MaeII ACGT 1 cut(s) 829
MaeIII GTNAC 3 cut(s) 14, 29, 809
MalI GATC 5 cut(s) 324, 432, 735, 837, 894
MboI GATC 5 cut(s) 322, 430, 733, 835, 892
MboII GAAGA 5 cut(s) 389, 521, 605, 827, 830
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 6 cut(s) 165, 388, 497, 512, 544, 946
MmeI TCCRAC 1 cut(s) 47
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 544
MseI TTAA 2 cut(s) 699, 777
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 571
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 571
MwoI GCNNNNNNNGC 3 cut(s) 401, 583, 862
NdeII GATC 5 cut(s) 322, 430, 733, 835, 892
NlaIII CATG 8 cut(s) 43, 146, 173, 316, 415, 553, 620, 734
NlaIV GGNNCC 3 cut(s) 243, 396, 494
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 146
PagI TCATGA 2 cut(s) 616, 730
PceI AGGCCT 1 cut(s) 94
PctI GAATGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 544
PfeI GAWTC 4 cut(s) 43, 50, 290, 338
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 6 cut(s) 175, 246, 519, 693, 772, 884
PmaCI CACGTG 1 cut(s) 830
PmlI CACGTG 1 cut(s) 830
Ppu21I YACGTR 1 cut(s) 830
PshBI ATTAAT 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 569
PspCI CACGTG 1 cut(s) 830
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 243, 396, 494
PspPI GGNCC 3 cut(s) 493, 682, 941
PvuII CAGCTG 1 cut(s) 205
RsaI GTAC 3 cut(s) 139, 652, 877
RsaNI GTAC 3 cut(s) 138, 651, 876
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 2 cut(s) 699, 777
SatI GCNGC 6 cut(s) 174, 245, 518, 692, 771, 883
Sau3AI GATC 5 cut(s) 322, 430, 733, 835, 892
Sau96I GGNCC 3 cut(s) 493, 682, 941
ScaI AGTACT 1 cut(s) 877
ScrFI CCNGG 1 cut(s) 571
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 2 cut(s) 573, 750
SfcI CTRYAG 2 cut(s) 555, 757
SinI GGWCC 2 cut(s) 493, 682
SmiMI CAYNNNNRTG 1 cut(s) 38
SpeI ACTAGT 2 cut(s) 419, 719
Sse9I AATT 6 cut(s) 165, 388, 497, 512, 544, 946
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 4 cut(s) 245, 348, 863, 882
SspMI CTAG 4 cut(s) 90, 420, 720, 927
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 9 cut(s) 65, 241, 364, 457, 556, 664, 707, 782, 809
TaiI ACGT 1 cut(s) 832
TaqI TCGA 2 cut(s) 163, 792
TasI AATT 6 cut(s) 165, 388, 497, 512, 544, 946
TatI WGTACW 2 cut(s) 137, 875
TauI GCSGC 2 cut(s) 247, 885
TfiI GAWTC 4 cut(s) 43, 50, 290, 338
Tru1I TTAA 2 cut(s) 699, 777
Tru9I TTAA 2 cut(s) 699, 777
TscAI CASTG 2 cut(s) 369, 943
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 4 cut(s) 173, 517, 691, 770
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 158, 384, 428, 605
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 2 cut(s) 369, 943
Van91I CCANNNNNTGG 1 cut(s) 390
VpaK11BI GGWCC 2 cut(s) 493, 682
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 2 cut(s) 165, 544
XceI RCATGY 1 cut(s) 146
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 544
XspI CTAG 4 cut(s) 90, 420, 720, 927
ZrmI AGTACT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.