FvH4_5g17270

WUSCHEL-related homeobox

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
9862714 .. 9866009
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17270.t1

Sequence Viewer

Length: 1158 bp
ATGTGGATGATGGGATACAATGATAGTAGTGACTTCAATATGATTCCGGATTCCGCCTTCAACGGTCGGAAGATTCGTCCTCTCGTTCCCAGGACGCACAACAACAACAACAACAACAACAGTTCAACAAGCACACATGTTCCGCCTTGTTTCAGTCGAATTCACGCTGCGTCTGATTTCTTAGCACAGTATCACCAGCTGGGTGAACAAAGAGGGATGAGGGAGTTCAACACAGTGCCTCAGGTAGTGGTGAGCTCGAGATGGAACCCCACGCCGGAGCAGTTGAGGGCACTAGAAGAGTTATATCGACGAGGGACTCGAACTCCATCGGCTGAGCAGATTCAGCAAATCACTGCTCAGCTTCGAAGGTTTGGAAAGATTGAGGGAAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCAAGAGAGAGGCAGAAACGCCGTCGCCAGATGGAATCTCACGACGACCTTCAACTCATGTGTTCCGCAGATCACCAAAAGAAGGAATCATTAGGCGGAGCAAGTAGGACAGTGTATGAAGTTGAAGAGACCAAGAATTGGGCACCCTCTACAAACTGCATGACTACTAGTCTCCAAGATCATCTGCATCATCATCAACAGGAAACAGTAAAAGCAGGAGCAGAAGAAAACAGGACGGAAGGATGGGTCCAATTCGATGAGGAAGAATTGCAGCAACTTCAACAACAGCAAAGAAGGAATTCCATGCCTGTGGAAAAGAATGCCACTTGGCAGATGATGCAGTTGTCTTGTCCTCCTCCTCCTCCTTCTGTTCCTTCTCTTCATGACCTCACCCACCTCATAAACGCACCCACTTGTCCTAGAGCGACAGTAAGAACAATGGGGATGGACCAAAAGCAGCTCATCAATAACCCTAACAATAAGACTAGTCCTCCTCATGATCTCAGCATCTTTATAGCTCCCTGCAGGTCCGGCGCTGCCCTTAACGGTCGCCATCTCCTCCACCACCACCACAGTGTCGAAGATGAAGATCAGACTCAAACGCTCGAGCTCTTTCCGCTCCGGAGTAATACTTGCGGCGAGAAAAGCCATCTTGCAGCTGAGAAATCGTCACTGAATCCTAGTTTCGGCACTGGCCCTAATTACCAGTTTTTCGAGTTCCTCCCATTGAAGAACTGA

Protein Analysis

386

Amino Acids

44.25

Weight (kDa)

7.75

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 86 - 145 2.3e-15 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015046)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 936
AccB1I GGYRCC 1 cut(s) 562
AccB7I CCANNNNNTGG 1 cut(s) 558
AccBSI CCGCTC 1 cut(s) 1039
AccIII TCCGGA 2 cut(s) 46, 1041
AciI CCGC 6 cut(s) 54, 143, 486, 516, 1037, 1056
AcsI RAATTY 2 cut(s) 159, 718
AfiI CCNNNNNNNGG 4 cut(s) 274, 502, 558, 1106
AflIII ACRYGT 2 cut(s) 136, 393
AgsI TTSAA 8 cut(s) 37, 61, 126, 229, 473, 545, 701, 1150
AhdI GACNNNNNGTC 1 cut(s) 588
AhlI ACTAGT 2 cut(s) 587, 905
AjnI CCWGG 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 993
AluBI AGCT 7 cut(s) 199, 255, 361, 880, 938, 1030, 1079
AluI AGCT 7 cut(s) 199, 255, 361, 880, 938, 1030, 1079
Alw21I GWGCWC 2 cut(s) 257, 1032
Alw26I GTCTC 2 cut(s) 542, 596
Ama87I CYCGRG 2 cut(s) 256, 1025
Aor13HI TCCGGA 2 cut(s) 46, 1041
AoxI GGCC 1 cut(s) 1114
ApeKI GCWGC 5 cut(s) 167, 691, 877, 956, 1076
ApoI RAATTY 2 cut(s) 159, 718
Asp700I GAANNNNTTC 2 cut(s) 395, 718
AspLEI GCGC 1 cut(s) 956
AspS9I GGNCC 4 cut(s) 667, 868, 948, 1115
AsuHPI GGTGA 5 cut(s) 185, 215, 262, 485, 802
AsuII TTCGAA 1 cut(s) 364
AvaI CYCGRG 2 cut(s) 256, 1025
AvaII GGWCC 3 cut(s) 667, 868, 948
AxyI CCTNAGG 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 292, 565
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 2 cut(s) 257, 1032
Bbv12I GWGCWC 2 cut(s) 257, 1032
BbvI GCAGC 5 cut(s) 154, 703, 889, 943, 1088
BccI CCATC 8 cut(s) 4, 255, 334, 445, 657, 859, 981, 1077
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 91
BciVI GTATCC 1 cut(s) 8
BcoDI GTCTC 2 cut(s) 542, 596
BcuI ACTAGT 2 cut(s) 587, 905
BfaI CTAG 5 cut(s) 293, 588, 840, 906, 1101
BfmI CTRYAG 1 cut(s) 943
BfoI RGCGCY 1 cut(s) 957
BfuAI ACCTGC 1 cut(s) 936
BfuI GTATCC 1 cut(s) 8
BisI GCNGC 6 cut(s) 168, 692, 878, 957, 1057, 1077
BlpI GCTNAGC 2 cut(s) 333, 357
BlsI GCNGC 6 cut(s) 169, 693, 879, 958, 1058, 1078
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 3 cut(s) 667, 868, 948
BmeRI GACNNNNNGTC 1 cut(s) 588
BmeT110I CYCGRG 2 cut(s) 256, 1025
BmgT120I GGNCC 4 cut(s) 667, 868, 948, 1115
BmiI GGNNCC 4 cut(s) 266, 407, 564, 668
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 3 cut(s) 616, 747, 936
Bpu1102I GCTNAGC 2 cut(s) 333, 357
Bpu14I TTCGAA 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 1008
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 2 cut(s) 46, 1041
BsaXI ACNNNNNCTCC 4 cut(s) 307, 337, 895, 925
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 502, 558, 1106
Bse1I ACTGG 2 cut(s) 1117, 1126
Bse21I CCTNAGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 1008
BseAI TCCGGA 2 cut(s) 46, 1041
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 4 cut(s) 12, 222, 668, 870
BseJI GATNNNNATC 1 cut(s) 1008
BseLI CCNNNNNNNGG 4 cut(s) 274, 502, 558, 1106
BseMII CTCAG 5 cut(s) 254, 324, 371, 937, 1071
BseNI ACTGG 2 cut(s) 1117, 1126
BseRI GAGGAG 5 cut(s) 765, 768, 771, 903, 968
BseSI GKGCMC 2 cut(s) 292, 565
BseXI GCAGC 5 cut(s) 154, 703, 889, 943, 1088
BseYI CCCAGC 1 cut(s) 199
Bsh1285I CGRYCG 2 cut(s) 67, 970
BshFI GGCC 1 cut(s) 1116
BshNI GGYRCC 1 cut(s) 562
BsiEI CGRYCG 2 cut(s) 67, 970
BsiHKAI GWGCWC 2 cut(s) 257, 1032
BsiHKCI CYCGRG 2 cut(s) 256, 1025
BsiSI CCGG 4 cut(s) 47, 275, 951, 1042
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 4 cut(s) 274, 502, 558, 1106
BsmAI GTCTC 2 cut(s) 542, 596
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 1 cut(s) 1116
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 2 cut(s) 256, 1025
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 4 cut(s) 257, 292, 565, 1032
Bsp13I TCCGGA 2 cut(s) 46, 1041
Bsp143I GATC 4 cut(s) 490, 598, 919, 1009
Bsp1720I GCTNAGC 2 cut(s) 333, 357
BspACI CCGC 6 cut(s) 54, 143, 486, 516, 1037, 1056
BspANI GGCC 1 cut(s) 1116
BspCNI CTCAG 5 cut(s) 253, 325, 370, 936, 1072
BspEI TCCGGA 2 cut(s) 46, 1041
BspHI TCATGA 2 cut(s) 802, 916
BspLI GGNNCC 4 cut(s) 266, 407, 564, 668
BspMAI CTGCAG 1 cut(s) 947
BspMI ACCTGC 1 cut(s) 936
BspT104I TTCGAA 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 562
BspTNI GGTCTC 1 cut(s) 542
BsrBI CCGCTC 1 cut(s) 1039
BsrI ACTGG 2 cut(s) 1117, 1126
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 4 cut(s) 490, 598, 919, 1009
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 9 cut(s) 65, 122, 189, 235, 532, 628, 850, 968, 995
Bst6I CTCTTC 3 cut(s) 291, 540, 804
BstAPI GCANNNNNTGC 1 cut(s) 757
BstBI TTCGAA 1 cut(s) 364
BstDEI CTNAG 6 cut(s) 181, 240, 333, 357, 923, 1080
BstF5I GGATG 4 cut(s) 12, 222, 668, 870
BstH2I RGCGCY 1 cut(s) 957
BstHHI GCGC 1 cut(s) 956
BstKTI GATC 4 cut(s) 493, 601, 922, 1012
BstMAI GTCTC 2 cut(s) 542, 596
BstMBI GATC 4 cut(s) 490, 598, 919, 1009
BstMCI CGRYCG 2 cut(s) 67, 970
BstMWI GCNNNNNNNGC 5 cut(s) 343, 757, 951, 1036, 1065
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 943
BstSLI GKGCMC 2 cut(s) 292, 565
BstV1I GCAGC 5 cut(s) 154, 703, 889, 943, 1088
BstXI CCANNNNNNTGG 1 cut(s) 730
Bsu36I CCTNAGG 1 cut(s) 240
BsuI GTATCC 1 cut(s) 8
BsuRI GGCC 1 cut(s) 1116
BtsCI GGATG 4 cut(s) 12, 222, 668, 870
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 6 cut(s) 240, 351, 537, 1000, 1091, 1110
BveI ACCTGC 1 cut(s) 936
CciI TCATGA 2 cut(s) 802, 916
CfoI GCGC 1 cut(s) 956
Cfr13I GGNCC 4 cut(s) 667, 868, 948, 1115
CseI GACGC 2 cut(s) 103, 159
CviAII CATG 6 cut(s) 137, 478, 580, 724, 803, 917
DdeI CTNAG 6 cut(s) 181, 240, 333, 357, 923, 1080
DpnI GATC 4 cut(s) 492, 600, 921, 1011
DpnII GATC 4 cut(s) 490, 598, 919, 1009
DriI GACNNNNNGTC 1 cut(s) 588
Eam1104I CTCTTC 3 cut(s) 291, 540, 804
Eam1105I GACNNNNNGTC 1 cut(s) 588
EarI CTCTTC 3 cut(s) 291, 540, 804
EciI GGCGGA 3 cut(s) 43, 132, 531
Ecl136II GAGCTC 2 cut(s) 255, 1030
Eco24I GRGCYC 2 cut(s) 257, 1032
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 3 cut(s) 667, 868, 948
Eco53kI GAGCTC 2 cut(s) 255, 1030
Eco81I CCTNAGG 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 256, 1025
EcoICRI GAGCTC 2 cut(s) 255, 1030
EcoRI GAATTC 2 cut(s) 159, 718
EcoRII CCWGG 1 cut(s) 89
EcoT38I GRGCYC 2 cut(s) 257, 1032
FaeI CATG 6 cut(s) 140, 481, 583, 727, 806, 920
FaqI GGGAC 1 cut(s) 328
FatI CATG 6 cut(s) 136, 477, 579, 723, 802, 916
Fnu4HI GCNGC 6 cut(s) 168, 692, 878, 957, 1057, 1077
FokI GGATG 4 cut(s) 19, 229, 675, 877
FriOI GRGCYC 2 cut(s) 257, 1032
Fsp4HI GCNGC 6 cut(s) 168, 692, 878, 957, 1057, 1077
FspBI CTAG 5 cut(s) 293, 588, 840, 906, 1101
GlaI GCGC 1 cut(s) 955
GluI GCNGC 6 cut(s) 168, 692, 878, 957, 1057, 1077
GsaI CCCAGC 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 957
HaeIII GGCC 1 cut(s) 1116
HapII CCGG 4 cut(s) 47, 275, 951, 1042
HgaI GACGC 2 cut(s) 103, 159
HhaI GCGC 1 cut(s) 956
Hin1II CATG 6 cut(s) 140, 481, 583, 727, 806, 920
Hin6I GCGC 1 cut(s) 954
HinP1I GCGC 1 cut(s) 954
HinfI GANTC 9 cut(s) 43, 50, 73, 316, 340, 455, 506, 1015, 1096
HpaII CCGG 4 cut(s) 47, 275, 951, 1042
HphI GGTGA 5 cut(s) 185, 215, 262, 485, 802
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 69, 175, 1014
Hpy188III TCNNGA 6 cut(s) 47, 258, 461, 803, 917, 1042
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 3 cut(s) 312, 447, 467
HpyAV CCTTC 8 cut(s) 67, 360, 479, 496, 653, 708, 795, 804
HpyCH4III ACNGT 9 cut(s) 65, 122, 189, 235, 532, 628, 850, 968, 995
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 6 cut(s) 579, 607, 691, 760, 945, 1076
HpyF10VI GCNNNNNNNGC 5 cut(s) 343, 757, 951, 1036, 1065
HpyF3I CTNAG 6 cut(s) 181, 240, 333, 357, 923, 1080
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 6 cut(s) 140, 481, 583, 727, 806, 920
HspAI GCGC 1 cut(s) 954
Kpn2I TCCGGA 2 cut(s) 46, 1041
Kzo9I GATC 4 cut(s) 490, 598, 919, 1009
LmnI GCTCC 5 cut(s) 277, 518, 638, 943, 1044
Lsp1109I GCAGC 5 cut(s) 154, 703, 889, 943, 1088
LweI GCATC 3 cut(s) 616, 747, 936
MaeI CTAG 5 cut(s) 293, 588, 840, 906, 1101
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 29, 1089
MalI GATC 4 cut(s) 492, 600, 921, 1011
MbiI CCGCTC 1 cut(s) 1039
MboI GATC 4 cut(s) 490, 598, 919, 1009
MboII GAAGA 8 cut(s) 82, 308, 557, 656, 695, 791, 1013, 1019
MhlI GDGCHC 4 cut(s) 257, 292, 565, 1032
MluCI AATT 6 cut(s) 159, 556, 671, 686, 718, 1120
MlyI GAGTC 2 cut(s) 310, 1009
MmeI TCCRAC 1 cut(s) 47
MroI TCCGGA 2 cut(s) 46, 1041
MroXI GAANNNNTTC 2 cut(s) 395, 718
MseI TTAA 1 cut(s) 963
MslI CAYNNNNRTG 2 cut(s) 728, 993
MspA1I CMGCKG 2 cut(s) 199, 1079
MspI CCGG 4 cut(s) 47, 275, 951, 1042
MspR9I CCNGG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 5 cut(s) 343, 757, 951, 1036, 1065
NdeII GATC 4 cut(s) 490, 598, 919, 1009
NlaIII CATG 6 cut(s) 140, 481, 583, 727, 806, 920
NlaIV GGNNCC 4 cut(s) 266, 407, 564, 668
NmuCI GTSAC 2 cut(s) 29, 1089
NspI RCATGY 1 cut(s) 140
NspV TTCGAA 1 cut(s) 364
OliI CACNNNNGTG 1 cut(s) 993
PaeR7I CTCGAG 2 cut(s) 256, 1025
PagI TCATGA 2 cut(s) 802, 916
PciI ACATGT 1 cut(s) 136
PcsI WCGNNNNNNNCGW 2 cut(s) 73, 316
PctI GAATGC 1 cut(s) 745
PdmI GAANNNNTTC 2 cut(s) 395, 718
PfeI GAWTC 7 cut(s) 43, 50, 73, 340, 455, 506, 1096
PflMI CCANNNNNTGG 1 cut(s) 558
PkrI GCNGC 6 cut(s) 169, 693, 879, 958, 1058, 1078
PleI GAGTC 2 cut(s) 310, 1009
PpsI GAGTC 2 cut(s) 310, 1009
PscI ACATGT 1 cut(s) 136
Psp124BI GAGCTC 2 cut(s) 257, 1032
Psp6I CCWGG 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 4 cut(s) 266, 407, 564, 668
PspPI GGNCC 4 cut(s) 667, 868, 948, 1115
PspXI VCTCGAGB 1 cut(s) 1025
PstI CTGCAG 1 cut(s) 947
PvuII CAGCTG 2 cut(s) 199, 1079
RseI CAYNNNNRTG 2 cut(s) 728, 993
SacI GAGCTC 2 cut(s) 257, 1032
SaqAI TTAA 1 cut(s) 963
SatI GCNGC 6 cut(s) 168, 692, 878, 957, 1057, 1077
Sau3AI GATC 4 cut(s) 490, 598, 919, 1009
Sau96I GGNCC 4 cut(s) 667, 868, 948, 1115
SbfI CCTGCAGG 1 cut(s) 947
SchI GAGTC 2 cut(s) 310, 1009
ScrFI CCNGG 1 cut(s) 91
SdaI CCTGCAGG 1 cut(s) 947
SduI GDGCHC 4 cut(s) 257, 292, 565, 1032
SfaNI GCATC 3 cut(s) 616, 747, 936
SfcI CTRYAG 1 cut(s) 943
Sfr274I CTCGAG 2 cut(s) 256, 1025
SfuI TTCGAA 1 cut(s) 364
SinI GGWCC 3 cut(s) 667, 868, 948
SlaI CTCGAG 2 cut(s) 256, 1025
SmiMI CAYNNNNRTG 2 cut(s) 728, 993
SmlI CTYRAG 2 cut(s) 256, 1025
SmoI CTYRAG 2 cut(s) 256, 1025
SpeI ACTAGT 2 cut(s) 587, 905
Sse8387I CCTGCAGG 1 cut(s) 947
Sse9I AATT 6 cut(s) 159, 556, 671, 686, 718, 1120
SsiI CCGC 6 cut(s) 54, 143, 486, 516, 1037, 1056
SspMI CTAG 5 cut(s) 293, 588, 840, 906, 1101
SstI GAGCTC 2 cut(s) 257, 1032
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 9 cut(s) 65, 122, 189, 235, 532, 628, 850, 968, 995
TaiI ACGT 1 cut(s) 396
TaqI TCGA 9 cut(s) 157, 257, 307, 319, 364, 675, 999, 1026, 1134
TasI AATT 6 cut(s) 159, 556, 671, 686, 718, 1120
TauI GCSGC 1 cut(s) 1059
TfiI GAWTC 7 cut(s) 43, 50, 73, 340, 455, 506, 1096
Tru1I TTAA 1 cut(s) 963
Tru9I TTAA 1 cut(s) 963
TscAI CASTG 6 cut(s) 240, 358, 537, 1000, 1098, 1117
TseFI GTSAC 2 cut(s) 29, 1089
TseI GCWGC 5 cut(s) 167, 691, 877, 956, 1076
Tsp45I GTSAC 2 cut(s) 29, 1089
TspDTI ATGAA 3 cut(s) 552, 791, 1020
TspGWI ACGGA 1 cut(s) 671
TspRI CASTG 6 cut(s) 240, 358, 537, 1000, 1098, 1117
Van91I CCANNNNNTGG 1 cut(s) 558
VpaK11BI GGWCC 3 cut(s) 667, 868, 948
XapI RAATTY 2 cut(s) 159, 718
XceI RCATGY 1 cut(s) 140
XhoI CTCGAG 2 cut(s) 256, 1025
XmnI GAANNNNTTC 2 cut(s) 395, 718
XspI CTAG 5 cut(s) 293, 588, 840, 906, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.