Rh7AG016200

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015046
Physical Location & Seq
Reverse (-)
1079458 .. 1084644
5187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG016200.1

Sequence Viewer

Length: 684 bp
ATGTGGATGATGGGTTACAACGATGGTGGTGACTTCAACATGATTCCGGATTCAGCCTTCAACGGTCGGAAGCTTCGGCCTCTCGTTCCTAGGCCTCTGTCATCTCCTCATAACAACAACAACACTTCAACAAGTACACATGCTCCACCTTGTTTCAGTCGAATTCATGCTGCATCTGATTTCTTAGCACAATATCACCAGCTGGGTGAACAAAGAGGGATGAGAGAGTTCAATACGGTGCCGCAGGTTGTAGTCAGCTCGAGATGGAACCCCACGCCGGAACAGTTGAGGGCACTAGAGGAGTTATATCGAAGAGGGACTCGAACCCCATCGGCTGAGCAGATTCAGCAAATCACTGCTCAGCTTAGAAGGTATGGAAAGATAGAGGGCAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCAAGAGAGAGACAGAAACGCCGTCGCCAGATGGAATCTCACGACGATCTTCAACTCATGTGTTCAGATCACCAAAAGAAGGAATCATTAGGCGGGGCAAGTAGGACAGTGTATGAAGTTGAAGAGACCAAGAATTGGGCACCCTCTGCAAACTGCATGACTACTAGTCTCCAAGATCAGCTTCATCATCAACAGGTCTATTCTATTTCCCTATATCTGCTTCTGTTCCTGTCTTTGTTTTGTTTTTATCTTTCTTCATAG

Protein Analysis

227

Amino Acids

26.42

Weight (kDa)

9.23

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 87 - 146 7.4e-16 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18010
fragaria_vesca FvH4_5g17270
malus_domestica MD06G1231300.v1.1 MD14G1235800.v1.1
prunus_persica Prupe.5G232600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178511
rosa_laevigata RLG00000005441
rosa_multiflora Rmu_sc0002421.1_g000001 Rmu_sc0016060.1_g000002
rosa_roxburghii Rroxscaffold_3G00274850
rosa_rugosa Rorug06G0417700
rosa_samantha Rh7AG016200 Rh7BG015700 Rh7CG016400 Rh7DG016300
rosa_wichuraiana Rw7G001280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 2 cut(s) 238, 562
AccB7I CCANNNNNTGG 1 cut(s) 558
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 2 cut(s) 242, 516
AcsI RAATTY 1 cut(s) 162
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 3 cut(s) 277, 502, 558
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 6 cut(s) 37, 61, 129, 232, 476, 545
AhdI GACNNNNNGTC 1 cut(s) 588
AhlI ACTAGT 1 cut(s) 587
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 5 cut(s) 73, 202, 258, 364, 604
AluI AGCT 5 cut(s) 73, 202, 258, 364, 604
Alw26I GTCTC 3 cut(s) 427, 542, 596
Ama87I CYCGRG 1 cut(s) 259
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 2 cut(s) 77, 92
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 398
AspA2I CCTAGG 1 cut(s) 89
AsuHPI GGTGA 4 cut(s) 41, 188, 218, 485
AvaI CYCGRG 1 cut(s) 259
AvrII CCTAGG 1 cut(s) 89
BaeGI GKGCMC 2 cut(s) 295, 565
BanI GGYRCC 2 cut(s) 238, 562
BbvI GCAGC 1 cut(s) 157
BccI CCATC 5 cut(s) 4, 17, 258, 337, 448
BceAI ACGGC 1 cut(s) 429
BcoDI GTCTC 3 cut(s) 427, 542, 596
BcuI ACTAGT 1 cut(s) 587
BfaI CTAG 3 cut(s) 90, 296, 588
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 2 cut(s) 171, 242
BlnI CCTAGG 1 cut(s) 89
BlpI GCTNAGC 2 cut(s) 336, 360
BlsI GCNGC 2 cut(s) 172, 243
BmeRI GACNNNNNGTC 1 cut(s) 588
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 4 cut(s) 240, 269, 410, 564
BmsI GCATC 1 cut(s) 182
Bpu1102I GCTNAGC 2 cut(s) 336, 360
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 502, 558
BseAI TCCGGA 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 2 cut(s) 12, 225
BseLI CCNNNNNNNGG 3 cut(s) 277, 502, 558
BseMII CTCAG 2 cut(s) 327, 374
BseRI GAGGAG 2 cut(s) 96, 314
BseSI GKGCMC 2 cut(s) 295, 565
BseXI GCAGC 1 cut(s) 157
BseYI CCCAGC 1 cut(s) 202
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 79, 94
BshNI GGYRCC 2 cut(s) 238, 562
BsiEI CGRYCG 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 2 cut(s) 47, 278
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 3 cut(s) 277, 502, 558
BsmAI GTCTC 3 cut(s) 427, 542, 596
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 2 cut(s) 79, 94
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 295, 565
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 3 cut(s) 469, 490, 598
Bsp1720I GCTNAGC 2 cut(s) 336, 360
BspACI CCGC 2 cut(s) 242, 516
BspANI GGCC 2 cut(s) 79, 94
BspCNI CTCAG 2 cut(s) 328, 373
BspEI TCCGGA 1 cut(s) 46
BspLI GGNNCC 4 cut(s) 240, 269, 410, 564
BspMI ACCTGC 1 cut(s) 235
BspT107I GGYRCC 2 cut(s) 238, 562
BspTNI GGTCTC 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 3 cut(s) 469, 490, 598
BssT1I CCWWGG 1 cut(s) 89
Bst4CI ACNGT 4 cut(s) 65, 238, 285, 532
Bst6I CTCTTC 2 cut(s) 307, 540
BstAPI GCANNNNNTGC 1 cut(s) 569
BstDEI CTNAG 4 cut(s) 184, 336, 360, 365
BstF5I GGATG 2 cut(s) 12, 225
BstKTI GATC 3 cut(s) 472, 493, 601
BstMAI GTCTC 3 cut(s) 427, 542, 596
BstMBI GATC 3 cut(s) 469, 490, 598
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 346, 569
BstNSI RCATGY 1 cut(s) 143
BstSLI GKGCMC 2 cut(s) 295, 565
BstV1I GCAGC 1 cut(s) 157
BsuRI GGCC 2 cut(s) 79, 94
BtsCI GGATG 2 cut(s) 12, 225
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 354, 537
BveI ACCTGC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 135
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 5 cut(s) 40, 140, 167, 481, 580
CviJI RGCY 9 cut(s) 56, 73, 79, 94, 202, 258, 335, 364, 604
CviKI_1 RGCY 9 cut(s) 56, 73, 79, 94, 202, 258, 335, 364, 604
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 4 cut(s) 184, 336, 360, 365
DpnI GATC 3 cut(s) 471, 492, 600
DpnII GATC 3 cut(s) 469, 490, 598
DriI GACNNNNNGTC 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 307, 540
Eam1105I GACNNNNNGTC 1 cut(s) 588
EarI CTCTTC 2 cut(s) 307, 540
Eco130I CCWWGG 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 542
Eco88I CYCGRG 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 5 cut(s) 43, 143, 170, 484, 583
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 1 cut(s) 331
FatI CATG 5 cut(s) 39, 139, 166, 480, 579
FauI CCCGC 1 cut(s) 509
Fnu4HI GCNGC 2 cut(s) 171, 242
FokI GGATG 2 cut(s) 19, 232
Fsp4HI GCNGC 2 cut(s) 171, 242
FspBI CTAG 3 cut(s) 90, 296, 588
GluI GCNGC 2 cut(s) 171, 242
GsaI CCCAGC 1 cut(s) 206
HaeIII GGCC 2 cut(s) 79, 94
HapII CCGG 2 cut(s) 47, 278
Hin1II CATG 5 cut(s) 43, 143, 170, 484, 583
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 6 cut(s) 43, 50, 319, 343, 458, 506
HpaII CCGG 2 cut(s) 47, 278
HphI GGTGA 4 cut(s) 41, 188, 218, 485
Hpy166II GTNNAC 2 cut(s) 137, 209
Hpy188I TCNGA 3 cut(s) 69, 178, 490
Hpy188III TCNNGA 3 cut(s) 47, 261, 464
Hpy8I GTNNAC 2 cut(s) 137, 209
Hpy99I CGWCG 2 cut(s) 450, 470
HpyAV CCTTC 3 cut(s) 67, 363, 496
HpyCH4III ACNGT 4 cut(s) 65, 238, 285, 532
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 3 cut(s) 173, 572, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 569
HpyF3I CTNAG 4 cut(s) 184, 336, 360, 365
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 5 cut(s) 43, 143, 170, 484, 583
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 469, 490, 598
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 8 cut(s) 60, 188, 212, 230, 291, 464, 602, 665
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 182
MaeI CTAG 3 cut(s) 90, 296, 588
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 14, 29
MalI GATC 3 cut(s) 471, 492, 600
MboI GATC 3 cut(s) 469, 490, 598
MboII GAAGA 4 cut(s) 324, 464, 557, 669
MhlI GDGCHC 2 cut(s) 295, 565
MluCI AATT 2 cut(s) 162, 556
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 9 cut(s) 90, 105, 117, 209, 282, 292, 308, 379, 577
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 398
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 2 cut(s) 47, 278
MwoI GCNNNNNNNGC 2 cut(s) 346, 569
NdeII GATC 3 cut(s) 469, 490, 598
NlaIII CATG 5 cut(s) 43, 143, 170, 484, 583
NlaIV GGNNCC 4 cut(s) 240, 269, 410, 564
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 259
PceI AGGCCT 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 5 cut(s) 43, 50, 343, 458, 506
PflMI CCANNNNNTGG 1 cut(s) 558
PkrI GCNGC 2 cut(s) 172, 243
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 202
PspN4I GGNNCC 4 cut(s) 240, 269, 410, 564
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SatI GCNGC 2 cut(s) 171, 242
Sau3AI GATC 3 cut(s) 469, 490, 598
SchI GAGTC 1 cut(s) 313
SduI GDGCHC 2 cut(s) 295, 565
SfaNI GCATC 1 cut(s) 182
Sfr274I CTCGAG 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SpeI ACTAGT 1 cut(s) 587
Sse9I AATT 2 cut(s) 162, 556
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 2 cut(s) 242, 516
SspMI CTAG 3 cut(s) 90, 296, 588
StuI AGGCCT 1 cut(s) 94
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 4 cut(s) 65, 238, 285, 532
TaiI ACGT 1 cut(s) 399
TaqI TCGA 4 cut(s) 160, 260, 310, 322
TasI AATT 2 cut(s) 162, 556
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 5 cut(s) 43, 50, 343, 458, 506
TscAI CASTG 2 cut(s) 361, 537
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 155, 552, 596, 669
TspRI CASTG 2 cut(s) 361, 537
Van91I CCANNNNNTGG 1 cut(s) 558
XapI RAATTY 1 cut(s) 162
XceI RCATGY 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 259
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 3 cut(s) 90, 296, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.