Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002421.1

Orthogroup ID

OG0015046

Physical Location & Seq

Genomic Coordinates Reverse (-)

3841 .. 6049

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002421.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgtggatgatgggttacaacgatggtggtgacttcaacatgattccggattcagccttcaacggtcggaagcttcggcctctcgttcctaggcctctgtcatctcctcataacaacaacaacacttcaacaagtacacatgctccaccttgtttcagtcgaattcatgctgcatctgatttcttagcacaatatcaccagctgggtgaacaaagagggatgagagagttcaatacggtgccgcaggttgtagtcagctcgagatggaaccccacgccggaacagttgagggcactagaggagttatatcgacgagggactcgaaccccatcggctgagcagattcagcaaatcactgctcagcttagaaggtatggaaagatagagggcaagaacgtgttctattggttccaaaaccacaaggcaagagagagacagaaacgccgtcgccagatggaatctcacgacgatcttcaactcatgtgttcagatcaccaaaagaaggaatcattaggcggggcaagtaggacagtgtatgaagttgaagagaccaagaattgggcaccctctgcaaactgcatgactactagtctccaagatcagcttcatcatcaacaggaaacagtaaaagcaggagcagagagcaggacggaagcatgggtccaattcggtgaggaagaattgcagccacttcaacaagagcaaagaaggaattccatgactgtagaaaagaatgccaggtggcagatgatgcagttgtcttgtcctcctcctcctcgtcttcatgacctcacccacctcataaacgcccccacttgtaccagaacgacagtaagaacaatggagatggaccaaaagcagctcattaataaccgtaataataagactagtcctcctcatgatctcagcatctttatagctccctacaggtctggcgctgcccttaacggtcgccatctccaacaccgtaacgaagaagaagatatttcacgtggagatcagtctcaaaccctccagctatttccgcttcggagtagtacttgcggcgaaaaagataatcttacaaccgagaaatccttgctaaaccctagtttcggcactggccctaattaccagttttttgagttcctcccattgaagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

381

Amino Acids

44.0

Weight (kDa)

8.85

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18010
fragaria_vesca	FvH4_5g17270
malus_domestica	MD06G1231300.v1.1 MD14G1235800.v1.1
prunus_persica	Prupe.5G232600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0178511
rosa_laevigata	RLG00000005441
rosa_multiflora	Rmu_sc0002421.1_g000001 Rmu_sc0016060.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274850
rosa_rugosa	Rorug06G0417700
rosa_samantha	Rh7AG016200 Rh7BG015700 Rh7CG016400 Rh7DG016300
rosa_wichuraiana	Rw7G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	2 cut(s)	238, 562
AccB7I	CCANNNNNTGG	1 cut(s)	558
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	4 cut(s)	242, 516, 1025, 1044
AcsI	RAATTY	2 cut(s)	162, 712
AcvI	CACGTG	1 cut(s)	992
AfaI	GTAC	3 cut(s)	136, 820, 1039
AfiI	CCNNNNNNNGG	4 cut(s)	277, 502, 558, 1094
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	8 cut(s)	37, 61, 129, 232, 476, 545, 695, 1138
AhdI	GACNNNNNGTC	1 cut(s)	588
AhlI	ACTAGT	2 cut(s)	587, 887
AjnI	CCWGG	1 cut(s)	737
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	8 cut(s)	73, 202, 258, 364, 604, 862, 920, 1018
AluI	AGCT	8 cut(s)	73, 202, 258, 364, 604, 862, 920, 1018
Alw26I	GTCTC	4 cut(s)	427, 542, 596, 1008
Ama87I	CYCGRG	1 cut(s)	259
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	3 cut(s)	77, 92, 1102
ApeKI	GCWGC	4 cut(s)	170, 685, 859, 938
ApoI	RAATTY	2 cut(s)	162, 712
AseI	ATTAAT	1 cut(s)	867
Asp700I	GAANNNNTTC	2 cut(s)	398, 712
AspA2I	CCTAGG	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	938
AspS9I	GGNCC	3 cut(s)	661, 850, 1103
AsuHPI	GGTGA	6 cut(s)	41, 188, 218, 485, 683, 784
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	2 cut(s)	661, 850
AvrII	CCTAGG	1 cut(s)	89
BaeGI	GKGCMC	2 cut(s)	295, 565
BanI	GGYRCC	2 cut(s)	238, 562
BbrPI	CACGTG	1 cut(s)	992
BbsI	GAAGAC	1 cut(s)	773
BbvI	GCAGC	4 cut(s)	157, 697, 871, 925
BccI	CCATC	7 cut(s)	4, 17, 258, 337, 448, 841, 963
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	739
BcoDI	GTCTC	4 cut(s)	427, 542, 596, 1008
BcuI	ACTAGT	2 cut(s)	587, 887
BfaI	CTAG	5 cut(s)	90, 296, 588, 888, 1089
BfmI	CTRYAG	2 cut(s)	723, 925
BfoI	RGCGCY	1 cut(s)	939
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	6 cut(s)	171, 242, 686, 860, 939, 1045
BlnI	CCTAGG	1 cut(s)	89
BlpI	GCTNAGC	2 cut(s)	336, 360
BlsI	GCNGC	6 cut(s)	172, 243, 687, 861, 940, 1046
BmcAI	AGTACT	1 cut(s)	1039
Bme1390I	CCNGG	1 cut(s)	739
Bme18I	GGWCC	2 cut(s)	661, 850
BmeRI	GACNNNNNGTC	1 cut(s)	588
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	3 cut(s)	661, 850, 1103
BmiI	GGNNCC	5 cut(s)	240, 269, 410, 564, 662
BmrFI	CCNGG	1 cut(s)	739
BmsI	GCATC	3 cut(s)	182, 741, 918
BpiI	GAAGAC	1 cut(s)	773
BpmI	CTGGAG	1 cut(s)	998
Bpu1102I	GCTNAGC	2 cut(s)	336, 360
BsaAI	YACGTR	1 cut(s)	992
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 877, 907
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 502, 558, 1094
Bse1I	ACTGG	2 cut(s)	1105, 1114
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	739
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	12, 225
BseLI	CCNNNNNNNGG	4 cut(s)	277, 502, 558, 1094
BseMII	CTCAG	3 cut(s)	327, 374, 919
BseNI	ACTGG	2 cut(s)	1105, 1114
BseRI	GAGGAG	6 cut(s)	96, 314, 759, 762, 765, 885
BseSI	GKGCMC	2 cut(s)	295, 565
BseXI	GCAGC	4 cut(s)	157, 697, 871, 925
BseYI	CCCAGC	1 cut(s)	202
Bsh1285I	CGRYCG	2 cut(s)	67, 952
BshFI	GGCC	3 cut(s)	79, 94, 1104
BshNI	GGYRCC	2 cut(s)	238, 562
BsiEI	CGRYCG	2 cut(s)	67, 952
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	47, 278
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	4 cut(s)	277, 502, 558, 1094
BsmAI	GTCTC	4 cut(s)	427, 542, 596, 1008
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	3 cut(s)	79, 94, 1104
Bso31I	GGTCTC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	295, 565
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	5 cut(s)	469, 490, 598, 901, 997
Bsp1720I	GCTNAGC	2 cut(s)	336, 360
BspACI	CCGC	4 cut(s)	242, 516, 1025, 1044
BspANI	GGCC	3 cut(s)	79, 94, 1104
BspCNI	CTCAG	3 cut(s)	328, 373, 918
BspEI	TCCGGA	1 cut(s)	46
BspHI	TCATGA	2 cut(s)	784, 898
BspLI	GGNNCC	5 cut(s)	240, 269, 410, 564, 662
BspMI	ACCTGC	1 cut(s)	235
BspT107I	GGYRCC	2 cut(s)	238, 562
BspTNI	GGTCTC	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	1105, 1114
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	5 cut(s)	469, 490, 598, 901, 997
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	739
Bst6I	CTCTTC	1 cut(s)	540
BstAPI	GCANNNNNTGC	2 cut(s)	569, 751
BstBAI	YACGTR	1 cut(s)	992
BstDEI	CTNAG	5 cut(s)	184, 336, 360, 365, 905
BstF5I	GGATG	2 cut(s)	12, 225
BstH2I	RGCGCY	1 cut(s)	939
BstHHI	GCGC	1 cut(s)	938
BstKTI	GATC	5 cut(s)	472, 493, 601, 904, 1000
BstMAI	GTCTC	4 cut(s)	427, 542, 596, 1008
BstMBI	GATC	5 cut(s)	469, 490, 598, 901, 997
BstMCI	CGRYCG	2 cut(s)	67, 952
BstMWI	GCNNNNNNNGC	4 cut(s)	346, 569, 751, 1024
BstNI	CCWGG	1 cut(s)	739
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	737
BstSFI	CTRYAG	2 cut(s)	723, 925
BstSLI	GKGCMC	2 cut(s)	295, 565
BstV1I	GCAGC	4 cut(s)	157, 697, 871, 925
BstV2I	GAAGAC	1 cut(s)	773
BsuRI	GGCC	3 cut(s)	79, 94, 1104
BtsCI	GGATG	2 cut(s)	12, 225
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	3 cut(s)	354, 537, 1098
BveI	ACCTGC	1 cut(s)	235
CciI	TCATGA	2 cut(s)	784, 898
CfoI	GCGC	1 cut(s)	938
Cfr13I	GGNCC	3 cut(s)	661, 850, 1103
Csp6I	GTAC	3 cut(s)	135, 819, 1038
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	9 cut(s)	40, 140, 167, 481, 580, 657, 718, 785, 899
CviQI	GTAC	3 cut(s)	135, 819, 1038
DdeI	CTNAG	5 cut(s)	184, 336, 360, 365, 905
DpnI	GATC	5 cut(s)	471, 492, 600, 903, 999
DpnII	GATC	5 cut(s)	469, 490, 598, 901, 997
DriI	GACNNNNNGTC	1 cut(s)	588
Eam1104I	CTCTTC	1 cut(s)	540
Eam1105I	GACNNNNNGTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	89
Eco147I	AGGCCT	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	661, 850
Eco72I	CACGTG	1 cut(s)	992
Eco88I	CYCGRG	1 cut(s)	259
EcoRI	GAATTC	2 cut(s)	162, 712
EcoRII	CCWGG	1 cut(s)	737
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	9 cut(s)	43, 143, 170, 484, 583, 660, 721, 788, 902
FalI	AAGNNNNNCTT	4 cut(s)	588, 620, 1044, 1076
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	9 cut(s)	39, 139, 166, 480, 579, 656, 717, 784, 898
FauI	CCCGC	1 cut(s)	509
Fnu4HI	GCNGC	6 cut(s)	171, 242, 686, 860, 939, 1045
FokI	GGATG	2 cut(s)	19, 232
Fsp4HI	GCNGC	6 cut(s)	171, 242, 686, 860, 939, 1045
FspBI	CTAG	5 cut(s)	90, 296, 588, 888, 1089
GlaI	GCGC	1 cut(s)	937
GluI	GCNGC	6 cut(s)	171, 242, 686, 860, 939, 1045
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	998
HaeII	RGCGCY	1 cut(s)	939
HaeIII	GGCC	3 cut(s)	79, 94, 1104
HapII	CCGG	2 cut(s)	47, 278
HhaI	GCGC	1 cut(s)	938
Hin1II	CATG	9 cut(s)	43, 143, 170, 484, 583, 660, 721, 788, 902
Hin6I	GCGC	1 cut(s)	936
HinP1I	GCGC	1 cut(s)	936
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	6 cut(s)	43, 50, 319, 343, 458, 506
HpaII	CCGG	2 cut(s)	47, 278
HphI	GGTGA	6 cut(s)	41, 188, 218, 485, 683, 784
Hpy166II	GTNNAC	2 cut(s)	137, 209
Hpy188I	TCNGA	4 cut(s)	69, 178, 490, 1032
Hpy188III	TCNNGA	5 cut(s)	47, 261, 464, 785, 899
Hpy8I	GTNNAC	2 cut(s)	137, 209
Hpy99I	CGWCG	3 cut(s)	315, 450, 470
HpyAV	CCTTC	4 cut(s)	67, 363, 496, 702
HpyCH4IV	ACGT	2 cut(s)	396, 991
HpyCH4V	TGCA	5 cut(s)	173, 572, 579, 685, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	346, 569, 751, 1024
HpyF3I	CTNAG	5 cut(s)	184, 336, 360, 365, 905
HpySE526I	ACGT	2 cut(s)	396, 991
Hsp92II	CATG	9 cut(s)	43, 143, 170, 484, 583, 660, 721, 788, 902
HspAI	GCGC	1 cut(s)	936
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	5 cut(s)	469, 490, 598, 901, 997
LmnI	GCTCC	3 cut(s)	148, 635, 925
Lsp1109I	GCAGC	4 cut(s)	157, 697, 871, 925
LweI	GCATC	3 cut(s)	182, 741, 918
MaeI	CTAG	5 cut(s)	90, 296, 588, 888, 1089
MaeII	ACGT	2 cut(s)	396, 991
MaeIII	GTNAC	3 cut(s)	14, 29, 968
MalI	GATC	5 cut(s)	471, 492, 600, 903, 999
MboI	GATC	5 cut(s)	469, 490, 598, 901, 997
MboII	GAAGA	7 cut(s)	464, 557, 689, 773, 986, 989, 992
MhlI	GDGCHC	2 cut(s)	295, 565
MluCI	AATT	6 cut(s)	162, 556, 665, 680, 712, 1108
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	2 cut(s)	47, 985
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	2 cut(s)	398, 712
MseI	TTAA	2 cut(s)	867, 945
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	2 cut(s)	47, 278
MspR9I	CCNGG	1 cut(s)	739
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	1 cut(s)	739
MwoI	GCNNNNNNNGC	4 cut(s)	346, 569, 751, 1024
NdeII	GATC	5 cut(s)	469, 490, 598, 901, 997
NlaIII	CATG	9 cut(s)	43, 143, 170, 484, 583, 660, 721, 788, 902
NlaIV	GGNNCC	5 cut(s)	240, 269, 410, 564, 662
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	259
PagI	TCATGA	2 cut(s)	784, 898
PceI	AGGCCT	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PctI	GAATGC	1 cut(s)	739
PdmI	GAANNNNTTC	2 cut(s)	398, 712
PfeI	GAWTC	5 cut(s)	43, 50, 343, 458, 506
PflMI	CCANNNNNTGG	1 cut(s)	558
PkrI	GCNGC	6 cut(s)	172, 243, 687, 861, 940, 1046
PleI	GAGTC	1 cut(s)	313
PmaCI	CACGTG	1 cut(s)	992
PmlI	CACGTG	1 cut(s)	992
PpsI	GAGTC	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	992
PshBI	ATTAAT	1 cut(s)	867
Psp6I	CCWGG	1 cut(s)	737
PspCI	CACGTG	1 cut(s)	992
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	737
PspN4I	GGNNCC	5 cut(s)	240, 269, 410, 564, 662
PspPI	GGNCC	3 cut(s)	661, 850, 1103
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	3 cut(s)	136, 820, 1039
RsaNI	GTAC	3 cut(s)	135, 819, 1038
SaqAI	TTAA	2 cut(s)	867, 945
SatI	GCNGC	6 cut(s)	171, 242, 686, 860, 939, 1045
Sau3AI	GATC	5 cut(s)	469, 490, 598, 901, 997
Sau96I	GGNCC	3 cut(s)	661, 850, 1103
ScaI	AGTACT	1 cut(s)	1039
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	739
SduI	GDGCHC	2 cut(s)	295, 565
SfaNI	GCATC	3 cut(s)	182, 741, 918
SfcI	CTRYAG	2 cut(s)	723, 925
Sfr274I	CTCGAG	1 cut(s)	259
SinI	GGWCC	2 cut(s)	661, 850
SlaI	CTCGAG	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
SpeI	ACTAGT	2 cut(s)	587, 887
Sse9I	AATT	6 cut(s)	162, 556, 665, 680, 712, 1108
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	4 cut(s)	242, 516, 1025, 1044
SspMI	CTAG	5 cut(s)	90, 296, 588, 888, 1089
StuI	AGGCCT	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	737
StyI	CCWWGG	1 cut(s)	89
TaiI	ACGT	2 cut(s)	399, 994
TaqI	TCGA	4 cut(s)	160, 260, 310, 322
TasI	AATT	6 cut(s)	162, 556, 665, 680, 712, 1108
TatI	WGTACW	2 cut(s)	134, 1037
TauI	GCSGC	2 cut(s)	244, 1047
TfiI	GAWTC	5 cut(s)	43, 50, 343, 458, 506
Tru1I	TTAA	2 cut(s)	867, 945
Tru9I	TTAA	2 cut(s)	867, 945
TscAI	CASTG	3 cut(s)	361, 537, 1105
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	4 cut(s)	170, 685, 859, 938
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	4 cut(s)	155, 552, 596, 773
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	3 cut(s)	361, 537, 1105
Van91I	CCANNNNNTGG	1 cut(s)	558
VpaK11BI	GGWCC	2 cut(s)	661, 850
VspI	ATTAAT	1 cut(s)	867
XapI	RAATTY	2 cut(s)	162, 712
XceI	RCATGY	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	259
XmaJI	CCTAGG	1 cut(s)	89
XmnI	GAANNNNTTC	2 cut(s)	398, 712
XspI	CTAG	5 cut(s)	90, 296, 588, 888, 1089
ZrmI	AGTACT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.