Rw7G001280

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0015046
Physical Location & Seq
Reverse (-)
1073782 .. 1075993
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G001280.1

Sequence Viewer

Length: 1164 bp
ATGTGGATGATGGGTTACAACGATGGTGGTGACTTCAACATGATTCCGGATTCAGCCTTCAACGGTCGGAAGCTTCGGCCTCTCGTTCCTAGGCCTCTGTCATCTCCTCATAACAACAACAACAACAACACTTCAACAAGTACACATGCTCCACCTTGTTTCAGTCGAATTCATGCTGCGTCTGATTTCTTAGCACAATATCACCAGCTGGATGTATATCCAGGTGAACAAAGAGGGATGAGAGAGTTCAATACGGTGCCGCAGGTTGTAGTGAGCTCGAGATGGAACCCCACGCCGGAACAGTTGAGGGCACTAGAGGAGTTATATCGACGAGGGACTCGAACCCCATCGGCTGAGCAGATTCAGCAAATCACTGCTCAGCTTAGAAGGTATGGAAAGATAGAGGGCAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCAAGAGAGAGACAGAAACGCCGTCGCCAGATGGAATCTCACGACGATCTTCAACTCATGTGTTCAGATCACCAAAAGAAGGAATCATTAGGCGGGGCAAGTAGGACAGTGTATGAAGTTGAAGAGACCAAGAATTGGGCACCCTCTGCAAACTGCATGACTACTAGTCTCCAAGATCAGCTTCATCATCAACAGGAAACAGTAAAAGCAGGAGCAGAGAGCAGGACGGAAGCATGGGTCCAATTCGGTGAGGAAGAATTGCAGCCACTTCAACAAGAGCAAAGAAGGAATTCCATGACTGTAGAAAAGAATGCCAGGTGGCAGATGATGCAGTTGTCTTGTCCTCCTCCTCCTCGTCTTCATGACCTCACCCACCTCATAAACGCCCCCACTTGTACCAGAACGACAGTAAGAACAATGGAGATGGACCAAAAGCAGCTCATTAATAACCGTAATAATAAGACTAGTCCTCCTCATGATCTCAGCATCTTTATAGCTCCCTACGGGTCTGGCGCTGCCCTTAACGGTCGCCATCTCCAACACCGTAACGAAGAAGAAGATATTTCACGTGGAGATCAGTCTCAAACGCTCCAGCTATTTCCTCTTCGGAGTAGTACTTGCGGCGAAAAAGATCATCTTACAACCGAGAAATCCTTGCTAAACCCTAGTTTCGGCACTGGCCCTAATTACCAGTTTTTTGAGTTCCTCCCATTGAAGAACTGA

Protein Analysis

387

Amino Acids

44.63

Weight (kDa)

8.47

Isoelectric Point (pI)

62.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 93 - 152 1.8e-15 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18010
fragaria_vesca FvH4_5g17270
malus_domestica MD06G1231300.v1.1 MD14G1235800.v1.1
prunus_persica Prupe.5G232600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178511
rosa_laevigata RLG00000005441
rosa_multiflora Rmu_sc0002421.1_g000001 Rmu_sc0016060.1_g000002
rosa_roxburghii Rroxscaffold_3G00274850
rosa_rugosa Rorug06G0417700
rosa_samantha Rh7AG016200 Rh7BG015700 Rh7CG016400 Rh7DG016300
rosa_wichuraiana Rw7G001280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AccB1I GGYRCC 2 cut(s) 256, 580
AccB7I CCANNNNNTGG 1 cut(s) 576
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 3 cut(s) 260, 534, 1062
AcsI RAATTY 2 cut(s) 168, 730
AcvI CACGTG 1 cut(s) 1010
AfaI GTAC 3 cut(s) 142, 838, 1057
AfiI CCNNNNNNNGG 4 cut(s) 295, 520, 576, 1112
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 8 cut(s) 37, 61, 135, 250, 494, 563, 713, 1156
AhdI GACNNNNNGTC 1 cut(s) 606
AhlI ACTAGT 2 cut(s) 605, 905
AjnI CCWGG 2 cut(s) 220, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AluBI AGCT 8 cut(s) 73, 208, 276, 382, 622, 880, 938, 1036
AluI AGCT 8 cut(s) 73, 208, 276, 382, 622, 880, 938, 1036
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 4 cut(s) 445, 560, 614, 1026
Ama87I CYCGRG 1 cut(s) 277
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 3 cut(s) 77, 92, 1120
ApeKI GCWGC 4 cut(s) 176, 703, 877, 956
ApoI RAATTY 2 cut(s) 168, 730
AseI ATTAAT 1 cut(s) 885
Asp700I GAANNNNTTC 2 cut(s) 416, 730
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 1 cut(s) 956
AspS9I GGNCC 3 cut(s) 679, 868, 1121
AsuHPI GGTGA 6 cut(s) 41, 194, 236, 503, 701, 802
AvaI CYCGRG 1 cut(s) 277
AvaII GGWCC 2 cut(s) 679, 868
AvrII CCTAGG 1 cut(s) 89
BaeGI GKGCMC 2 cut(s) 313, 583
BanI GGYRCC 2 cut(s) 256, 580
BanII GRGCYC 1 cut(s) 278
BbrPI CACGTG 1 cut(s) 1010
BbsI GAAGAC 1 cut(s) 791
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 4 cut(s) 163, 715, 889, 943
BccI CCATC 7 cut(s) 4, 17, 276, 355, 466, 859, 981
BceAI ACGGC 1 cut(s) 447
BciT130I CCWGG 2 cut(s) 222, 757
BcoDI GTCTC 4 cut(s) 445, 560, 614, 1026
BcuI ACTAGT 2 cut(s) 605, 905
BfaI CTAG 5 cut(s) 90, 314, 606, 906, 1107
BfmI CTRYAG 1 cut(s) 741
BfoI RGCGCY 1 cut(s) 957
BfuAI ACCTGC 1 cut(s) 253
BisI GCNGC 6 cut(s) 177, 260, 704, 878, 957, 1063
BlnI CCTAGG 1 cut(s) 89
BlpI GCTNAGC 2 cut(s) 354, 378
BlsI GCNGC 6 cut(s) 178, 261, 705, 879, 958, 1064
BmcAI AGTACT 1 cut(s) 1057
Bme1390I CCNGG 2 cut(s) 222, 757
Bme18I GGWCC 2 cut(s) 679, 868
BmeRI GACNNNNNGTC 1 cut(s) 606
BmeT110I CYCGRG 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 679, 868, 1121
BmiI GGNNCC 5 cut(s) 258, 287, 428, 582, 680
BmrFI CCNGG 2 cut(s) 222, 757
BmsI GCATC 2 cut(s) 759, 936
BpiI GAAGAC 1 cut(s) 791
BpmI CTGGAG 1 cut(s) 1016
Bpu1102I GCTNAGC 2 cut(s) 354, 378
BsaAI YACGTR 1 cut(s) 1010
BsaBI GATNNNNATC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 895, 925
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 520, 576, 1112
Bse1I ACTGG 2 cut(s) 1123, 1132
Bse8I GATNNNNATC 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 2 cut(s) 222, 757
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 3 cut(s) 12, 217, 243
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 4 cut(s) 295, 520, 576, 1112
BseMII CTCAG 3 cut(s) 345, 392, 937
BseNI ACTGG 2 cut(s) 1123, 1132
BseRI GAGGAG 6 cut(s) 96, 332, 777, 780, 783, 903
BseSI GKGCMC 2 cut(s) 313, 583
BseXI GCAGC 4 cut(s) 163, 715, 889, 943
Bsh1285I CGRYCG 2 cut(s) 67, 970
BshFI GGCC 3 cut(s) 79, 94, 1122
BshNI GGYRCC 2 cut(s) 256, 580
BsiEI CGRYCG 2 cut(s) 67, 970
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 2 cut(s) 47, 296
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 4 cut(s) 295, 520, 576, 1112
BsmAI GTCTC 4 cut(s) 445, 560, 614, 1026
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 757
BsnI GGCC 3 cut(s) 79, 94, 1122
Bso31I GGTCTC 1 cut(s) 560
BsoBI CYCGRG 1 cut(s) 277
Bsp1286I GDGCHC 3 cut(s) 278, 313, 583
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 6 cut(s) 487, 508, 616, 919, 1015, 1072
Bsp1720I GCTNAGC 2 cut(s) 354, 378
BspACI CCGC 3 cut(s) 260, 534, 1062
BspANI GGCC 3 cut(s) 79, 94, 1122
BspCNI CTCAG 3 cut(s) 346, 391, 936
BspEI TCCGGA 1 cut(s) 46
BspHI TCATGA 2 cut(s) 802, 916
BspLI GGNNCC 5 cut(s) 258, 287, 428, 582, 680
BspMI ACCTGC 1 cut(s) 253
BspT107I GGYRCC 2 cut(s) 256, 580
BspTNI GGTCTC 1 cut(s) 560
BsrI ACTGG 2 cut(s) 1123, 1132
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 6 cut(s) 487, 508, 616, 919, 1015, 1072
BssT1I CCWWGG 1 cut(s) 89
Bst2UI CCWGG 2 cut(s) 222, 757
Bst6I CTCTTC 2 cut(s) 558, 1050
BstAPI GCANNNNNTGC 2 cut(s) 587, 769
BstBAI YACGTR 1 cut(s) 1010
BstDEI CTNAG 5 cut(s) 190, 354, 378, 383, 923
BstF5I GGATG 3 cut(s) 12, 217, 243
BstH2I RGCGCY 1 cut(s) 957
BstHHI GCGC 1 cut(s) 956
BstKTI GATC 6 cut(s) 490, 511, 619, 922, 1018, 1075
BstMAI GTCTC 4 cut(s) 445, 560, 614, 1026
BstMBI GATC 6 cut(s) 487, 508, 616, 919, 1015, 1072
BstMCI CGRYCG 2 cut(s) 67, 970
BstMWI GCNNNNNNNGC 3 cut(s) 364, 587, 769
BstNI CCWGG 2 cut(s) 222, 757
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 220, 755
BstSFI CTRYAG 1 cut(s) 741
BstSLI GKGCMC 2 cut(s) 313, 583
BstV1I GCAGC 4 cut(s) 163, 715, 889, 943
BstV2I GAAGAC 1 cut(s) 791
BsuRI GGCC 3 cut(s) 79, 94, 1122
BtsCI GGATG 3 cut(s) 12, 217, 243
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 3 cut(s) 372, 555, 1116
BveI ACCTGC 1 cut(s) 253
CciI TCATGA 2 cut(s) 802, 916
CfoI GCGC 1 cut(s) 956
Cfr13I GGNCC 3 cut(s) 679, 868, 1121
CseI GACGC 1 cut(s) 168
Csp6I GTAC 3 cut(s) 141, 837, 1056
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 9 cut(s) 40, 146, 173, 499, 598, 675, 736, 803, 917
CviQI GTAC 3 cut(s) 141, 837, 1056
DdeI CTNAG 5 cut(s) 190, 354, 378, 383, 923
DpnI GATC 6 cut(s) 489, 510, 618, 921, 1017, 1074
DpnII GATC 6 cut(s) 487, 508, 616, 919, 1015, 1072
DriI GACNNNNNGTC 1 cut(s) 606
Eam1104I CTCTTC 2 cut(s) 558, 1050
Eam1105I GACNNNNNGTC 1 cut(s) 606
EarI CTCTTC 2 cut(s) 558, 1050
Ecl136II GAGCTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 278
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 2 cut(s) 679, 868
Eco53kI GAGCTC 1 cut(s) 276
Eco72I CACGTG 1 cut(s) 1010
Eco88I CYCGRG 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 276
EcoRI GAATTC 2 cut(s) 168, 730
EcoRII CCWGG 2 cut(s) 220, 755
EcoT14I CCWWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 9 cut(s) 43, 149, 176, 502, 601, 678, 739, 806, 920
FalI AAGNNNNNCTT 4 cut(s) 606, 638, 1062, 1094
FaqI GGGAC 1 cut(s) 349
FatI CATG 9 cut(s) 39, 145, 172, 498, 597, 674, 735, 802, 916
FauI CCCGC 1 cut(s) 527
Fnu4HI GCNGC 6 cut(s) 177, 260, 704, 878, 957, 1063
FokI GGATG 3 cut(s) 19, 224, 250
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 6 cut(s) 177, 260, 704, 878, 957, 1063
FspBI CTAG 5 cut(s) 90, 314, 606, 906, 1107
GlaI GCGC 1 cut(s) 955
GluI GCNGC 6 cut(s) 177, 260, 704, 878, 957, 1063
GsuI CTGGAG 1 cut(s) 1016
HaeII RGCGCY 1 cut(s) 957
HaeIII GGCC 3 cut(s) 79, 94, 1122
HapII CCGG 2 cut(s) 47, 296
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 956
Hin1II CATG 9 cut(s) 43, 149, 176, 502, 601, 678, 739, 806, 920
Hin6I GCGC 1 cut(s) 954
HinP1I GCGC 1 cut(s) 954
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 6 cut(s) 43, 50, 337, 361, 476, 524
HpaII CCGG 2 cut(s) 47, 296
HphI GGTGA 6 cut(s) 41, 194, 236, 503, 701, 802
Hpy166II GTNNAC 2 cut(s) 143, 227
Hpy188I TCNGA 4 cut(s) 69, 184, 508, 1050
Hpy188III TCNNGA 5 cut(s) 47, 279, 482, 803, 917
Hpy8I GTNNAC 2 cut(s) 143, 227
Hpy99I CGWCG 3 cut(s) 333, 468, 488
HpyAV CCTTC 4 cut(s) 67, 381, 514, 720
HpyCH4IV ACGT 2 cut(s) 414, 1009
HpyCH4V TGCA 4 cut(s) 590, 597, 703, 772
HpyF10VI GCNNNNNNNGC 3 cut(s) 364, 587, 769
HpyF3I CTNAG 5 cut(s) 190, 354, 378, 383, 923
HpySE526I ACGT 2 cut(s) 414, 1009
Hsp92II CATG 9 cut(s) 43, 149, 176, 502, 601, 678, 739, 806, 920
HspAI GCGC 1 cut(s) 954
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 6 cut(s) 487, 508, 616, 919, 1015, 1072
LmnI GCTCC 4 cut(s) 154, 653, 943, 1035
Lsp1109I GCAGC 4 cut(s) 163, 715, 889, 943
LweI GCATC 2 cut(s) 759, 936
MaeI CTAG 5 cut(s) 90, 314, 606, 906, 1107
MaeII ACGT 2 cut(s) 414, 1009
MaeIII GTNAC 3 cut(s) 14, 29, 986
MalI GATC 6 cut(s) 489, 510, 618, 921, 1017, 1074
MboI GATC 6 cut(s) 487, 508, 616, 919, 1015, 1072
MboII GAAGA 8 cut(s) 482, 575, 707, 791, 1004, 1007, 1010, 1037
MhlI GDGCHC 3 cut(s) 278, 313, 583
MluCI AATT 6 cut(s) 168, 574, 683, 698, 730, 1126
MlyI GAGTC 1 cut(s) 331
MmeI TCCRAC 2 cut(s) 47, 1003
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 2 cut(s) 416, 730
MseI TTAA 2 cut(s) 885, 963
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 2 cut(s) 47, 296
MspR9I CCNGG 2 cut(s) 222, 757
Mva1269I GAATGC 1 cut(s) 757
MvaI CCWGG 2 cut(s) 222, 757
MwoI GCNNNNNNNGC 3 cut(s) 364, 587, 769
NdeII GATC 6 cut(s) 487, 508, 616, 919, 1015, 1072
NlaIII CATG 9 cut(s) 43, 149, 176, 502, 601, 678, 739, 806, 920
NlaIV GGNNCC 5 cut(s) 258, 287, 428, 582, 680
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 277
PagI TCATGA 2 cut(s) 802, 916
PceI AGGCCT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PctI GAATGC 1 cut(s) 757
PdmI GAANNNNTTC 2 cut(s) 416, 730
PfeI GAWTC 5 cut(s) 43, 50, 361, 476, 524
PflMI CCANNNNNTGG 1 cut(s) 576
PkrI GCNGC 6 cut(s) 178, 261, 705, 879, 958, 1064
PleI GAGTC 1 cut(s) 331
PmaCI CACGTG 1 cut(s) 1010
PmlI CACGTG 1 cut(s) 1010
PpsI GAGTC 1 cut(s) 331
Ppu21I YACGTR 1 cut(s) 1010
PshBI ATTAAT 1 cut(s) 885
Psp124BI GAGCTC 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 220, 755
PspCI CACGTG 1 cut(s) 1010
PspGI CCWGG 2 cut(s) 220, 755
PspN4I GGNNCC 5 cut(s) 258, 287, 428, 582, 680
PspPI GGNCC 3 cut(s) 679, 868, 1121
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 3 cut(s) 142, 838, 1057
RsaNI GTAC 3 cut(s) 141, 837, 1056
SacI GAGCTC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 885, 963
SatI GCNGC 6 cut(s) 177, 260, 704, 878, 957, 1063
Sau3AI GATC 6 cut(s) 487, 508, 616, 919, 1015, 1072
Sau96I GGNCC 3 cut(s) 679, 868, 1121
ScaI AGTACT 1 cut(s) 1057
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 2 cut(s) 222, 757
SduI GDGCHC 3 cut(s) 278, 313, 583
SfaNI GCATC 2 cut(s) 759, 936
SfcI CTRYAG 1 cut(s) 741
Sfr274I CTCGAG 1 cut(s) 277
SinI GGWCC 2 cut(s) 679, 868
SlaI CTCGAG 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SpeI ACTAGT 2 cut(s) 605, 905
Sse9I AATT 6 cut(s) 168, 574, 683, 698, 730, 1126
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 3 cut(s) 260, 534, 1062
SspMI CTAG 5 cut(s) 90, 314, 606, 906, 1107
SstI GAGCTC 1 cut(s) 278
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 220, 755
StyI CCWWGG 1 cut(s) 89
TaiI ACGT 2 cut(s) 417, 1012
TaqI TCGA 4 cut(s) 166, 278, 328, 340
TasI AATT 6 cut(s) 168, 574, 683, 698, 730, 1126
TatI WGTACW 2 cut(s) 140, 1055
TauI GCSGC 2 cut(s) 262, 1065
TfiI GAWTC 5 cut(s) 43, 50, 361, 476, 524
Tru1I TTAA 2 cut(s) 885, 963
Tru9I TTAA 2 cut(s) 885, 963
TscAI CASTG 3 cut(s) 379, 555, 1123
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 4 cut(s) 176, 703, 877, 956
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 161, 570, 614, 791
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 3 cut(s) 379, 555, 1123
Van91I CCANNNNNTGG 1 cut(s) 576
VpaK11BI GGWCC 2 cut(s) 679, 868
VspI ATTAAT 1 cut(s) 885
XapI RAATTY 2 cut(s) 168, 730
XceI RCATGY 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 2 cut(s) 416, 730
XspI CTAG 5 cut(s) 90, 314, 606, 906, 1107
ZrmI AGTACT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.