Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016060.1

Orthogroup ID

OG0015046

Physical Location & Seq

Genomic Coordinates Reverse (-)

4330 .. 6212

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016060.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgagagagttcaatacggtgccgcaggttgtagtcagctcgagatggaaccccacgccggaacagttgagggcactagaggagttatatcgacgagggactcgaaccccatcggctgagcagattcagcaaatcactgctcagcttagaaggtatggaaagatagagggcaagaacgtgttctattggttccaaaaccacaaggcaagagagagacagaaacgccgtcgccagatggaatctcacgacgatcttcaactcatgtgttcagatcaccaaaagaaggaatcattaggcggggcaagtaggacagtgtatgaagttgaagagaccaagaattgggcaccctctgcaaactgcatgactactagtctccaagatcagcttcatcatcaacaggaaacagtaaaagcaggagcagagagcaggacggaagcatgggtccaattcggtgaggaagaattgcagccacttcaacaagagcaaagaaggaattccatgactgtagaaaagaatgccaggtggcagatgatgcagttgtcttgtcctcctcctcctcgtcttcatgacctcacccacctcataaacgcccccacttgtaccagaacgacagtaagaacaatggagatggaccaaaagcagctcattaataaccgtaataataagactagtcctcctcatgatctcagcatctttatagctccctacaggtctggcgctgcccttaacggtcgccatctccaacaccgtaacgaagaagaagatatttcacgtggagatcagtctcaaaccctccagctatttccgcttcggagtagtacttgcggcgaaaaagataatcttacaaccgagaaatccttgctaaaccctagtttcggcactggccctaattaccagttttttgagttcctcccattgaagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

308

Amino Acids

35.86

Weight (kDa)

8.78

Isoelectric Point (pI)

70.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18010
fragaria_vesca	FvH4_5g17270
malus_domestica	MD06G1231300.v1.1 MD14G1235800.v1.1
prunus_persica	Prupe.5G232600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0178511
rosa_laevigata	RLG00000005441
rosa_multiflora	Rmu_sc0002421.1_g000001 Rmu_sc0016060.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274850
rosa_rugosa	Rorug06G0417700
rosa_samantha	Rh7AG016200 Rh7BG015700 Rh7CG016400 Rh7DG016300
rosa_wichuraiana	Rw7G001280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	2 cut(s)	19, 343
AccB7I	CCANNNNNTGG	1 cut(s)	339
AciI	CCGC	4 cut(s)	23, 297, 806, 825
AcsI	RAATTY	1 cut(s)	493
AcvI	CACGTG	1 cut(s)	773
AfaI	GTAC	2 cut(s)	601, 820
AfiI	CCNNNNNNNGG	4 cut(s)	58, 283, 339, 875
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	5 cut(s)	13, 257, 326, 476, 919
AhdI	GACNNNNNGTC	1 cut(s)	369
AhlI	ACTAGT	2 cut(s)	368, 668
AjnI	CCWGG	1 cut(s)	518
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	6 cut(s)	39, 145, 385, 643, 701, 799
AluI	AGCT	6 cut(s)	39, 145, 385, 643, 701, 799
Alw26I	GTCTC	4 cut(s)	208, 323, 377, 789
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	883
ApeKI	GCWGC	3 cut(s)	466, 640, 719
ApoI	RAATTY	1 cut(s)	493
AseI	ATTAAT	1 cut(s)	648
Asp700I	GAANNNNTTC	2 cut(s)	179, 493
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	3 cut(s)	442, 631, 884
AsuHPI	GGTGA	3 cut(s)	266, 464, 565
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	442, 631
BaeGI	GKGCMC	2 cut(s)	76, 346
BanI	GGYRCC	2 cut(s)	19, 343
BbrPI	CACGTG	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	3 cut(s)	478, 652, 706
BccI	CCATC	5 cut(s)	39, 118, 229, 622, 744
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	520
BcoDI	GTCTC	4 cut(s)	208, 323, 377, 789
BcuI	ACTAGT	2 cut(s)	368, 668
BfaI	CTAG	4 cut(s)	77, 369, 669, 870
BfmI	CTRYAG	2 cut(s)	504, 706
BfoI	RGCGCY	1 cut(s)	720
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	5 cut(s)	23, 467, 641, 720, 826
BlpI	GCTNAGC	2 cut(s)	117, 141
BlsI	GCNGC	5 cut(s)	24, 468, 642, 721, 827
BmcAI	AGTACT	1 cut(s)	820
Bme1390I	CCNGG	1 cut(s)	520
Bme18I	GGWCC	2 cut(s)	442, 631
BmeRI	GACNNNNNGTC	1 cut(s)	369
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	3 cut(s)	442, 631, 884
BmiI	GGNNCC	5 cut(s)	21, 50, 191, 345, 443
BmrFI	CCNGG	1 cut(s)	520
BmsI	GCATC	2 cut(s)	522, 699
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	779
Bpu1102I	GCTNAGC	2 cut(s)	117, 141
BsaAI	YACGTR	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 283, 339, 875
Bse1I	ACTGG	2 cut(s)	886, 895
BseBI	CCWGG	1 cut(s)	520
BseLI	CCNNNNNNNGG	4 cut(s)	58, 283, 339, 875
BseMII	CTCAG	3 cut(s)	108, 155, 700
BseNI	ACTGG	2 cut(s)	886, 895
BseRI	GAGGAG	5 cut(s)	95, 540, 543, 546, 666
BseSI	GKGCMC	2 cut(s)	76, 346
BseXI	GCAGC	3 cut(s)	478, 652, 706
Bsh1285I	CGRYCG	1 cut(s)	733
BshFI	GGCC	1 cut(s)	885
BshNI	GGYRCC	2 cut(s)	19, 343
BsiEI	CGRYCG	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	4 cut(s)	58, 283, 339, 875
BsmAI	GTCTC	4 cut(s)	208, 323, 377, 789
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	885
Bso31I	GGTCTC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	76, 346
Bsp143I	GATC	5 cut(s)	250, 271, 379, 682, 778
Bsp1720I	GCTNAGC	2 cut(s)	117, 141
BspACI	CCGC	4 cut(s)	23, 297, 806, 825
BspANI	GGCC	1 cut(s)	885
BspCNI	CTCAG	3 cut(s)	109, 154, 699
BspHI	TCATGA	2 cut(s)	565, 679
BspLI	GGNNCC	5 cut(s)	21, 50, 191, 345, 443
BspMI	ACCTGC	1 cut(s)	16
BspT107I	GGYRCC	2 cut(s)	19, 343
BspTNI	GGTCTC	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	886, 895
BssMI	GATC	5 cut(s)	250, 271, 379, 682, 778
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	9 cut(s)	19, 66, 313, 406, 505, 613, 656, 731, 749
Bst6I	CTCTTC	1 cut(s)	321
BstAPI	GCANNNNNTGC	2 cut(s)	350, 532
BstBAI	YACGTR	1 cut(s)	773
BstDEI	CTNAG	4 cut(s)	117, 141, 146, 686
BstH2I	RGCGCY	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	5 cut(s)	253, 274, 382, 685, 781
BstMAI	GTCTC	4 cut(s)	208, 323, 377, 789
BstMBI	GATC	5 cut(s)	250, 271, 379, 682, 778
BstMCI	CGRYCG	1 cut(s)	733
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 350, 532, 805
BstNI	CCWGG	1 cut(s)	520
BstSCI	CCNGG	1 cut(s)	518
BstSFI	CTRYAG	2 cut(s)	504, 706
BstSLI	GKGCMC	2 cut(s)	76, 346
BstV1I	GCAGC	3 cut(s)	478, 652, 706
BstV2I	GAAGAC	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	885
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	3 cut(s)	135, 318, 879
BveI	ACCTGC	1 cut(s)	16
CciI	TCATGA	2 cut(s)	565, 679
CfoI	GCGC	1 cut(s)	719
Cfr13I	GGNCC	3 cut(s)	442, 631, 884
Csp6I	GTAC	2 cut(s)	600, 819
CviAII	CATG	6 cut(s)	262, 361, 438, 499, 566, 680
CviJI	RGCY	9 cut(s)	39, 116, 145, 385, 469, 643, 701, 799, 885
CviKI_1	RGCY	9 cut(s)	39, 116, 145, 385, 469, 643, 701, 799, 885
CviQI	GTAC	2 cut(s)	600, 819
DdeI	CTNAG	4 cut(s)	117, 141, 146, 686
DpnI	GATC	5 cut(s)	252, 273, 381, 684, 780
DpnII	GATC	5 cut(s)	250, 271, 379, 682, 778
DriI	GACNNNNNGTC	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	321
Eam1105I	GACNNNNNGTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	442, 631
Eco72I	CACGTG	1 cut(s)	773
Eco88I	CYCGRG	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	518
FaeI	CATG	6 cut(s)	265, 364, 441, 502, 569, 683
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 825, 857
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	6 cut(s)	261, 360, 437, 498, 565, 679
FauI	CCCGC	1 cut(s)	290
Fnu4HI	GCNGC	5 cut(s)	23, 467, 641, 720, 826
Fsp4HI	GCNGC	5 cut(s)	23, 467, 641, 720, 826
FspBI	CTAG	4 cut(s)	77, 369, 669, 870
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	5 cut(s)	23, 467, 641, 720, 826
GsuI	CTGGAG	1 cut(s)	779
HaeII	RGCGCY	1 cut(s)	720
HaeIII	GGCC	1 cut(s)	885
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	719
Hin1II	CATG	6 cut(s)	265, 364, 441, 502, 569, 683
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HinfI	GANTC	4 cut(s)	100, 124, 239, 287
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	3 cut(s)	266, 464, 565
Hpy188I	TCNGA	2 cut(s)	271, 813
Hpy188III	TCNNGA	4 cut(s)	42, 245, 566, 680
Hpy99I	CGWCG	3 cut(s)	96, 231, 251
HpyAV	CCTTC	3 cut(s)	144, 277, 483
HpyCH4III	ACNGT	9 cut(s)	19, 66, 313, 406, 505, 613, 656, 731, 749
HpyCH4IV	ACGT	2 cut(s)	177, 772
HpyCH4V	TGCA	4 cut(s)	353, 360, 466, 535
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 350, 532, 805
HpyF3I	CTNAG	4 cut(s)	117, 141, 146, 686
HpySE526I	ACGT	2 cut(s)	177, 772
Hsp92II	CATG	6 cut(s)	265, 364, 441, 502, 569, 683
HspAI	GCGC	1 cut(s)	717
Kzo9I	GATC	5 cut(s)	250, 271, 379, 682, 778
LmnI	GCTCC	2 cut(s)	416, 706
Lsp1109I	GCAGC	3 cut(s)	478, 652, 706
LweI	GCATC	2 cut(s)	522, 699
MaeI	CTAG	4 cut(s)	77, 369, 669, 870
MaeII	ACGT	2 cut(s)	177, 772
MaeIII	GTNAC	1 cut(s)	749
MalI	GATC	5 cut(s)	252, 273, 381, 684, 780
MboI	GATC	5 cut(s)	250, 271, 379, 682, 778
MboII	GAAGA	7 cut(s)	245, 338, 470, 554, 767, 770, 773
MhlI	GDGCHC	2 cut(s)	76, 346
MluCI	AATT	5 cut(s)	337, 446, 461, 493, 889
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	766
MroXI	GAANNNNTTC	2 cut(s)	179, 493
MseI	TTAA	2 cut(s)	648, 726
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	520
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	520
MwoI	GCNNNNNNNGC	4 cut(s)	127, 350, 532, 805
NdeII	GATC	5 cut(s)	250, 271, 379, 682, 778
NlaIII	CATG	6 cut(s)	265, 364, 441, 502, 569, 683
NlaIV	GGNNCC	5 cut(s)	21, 50, 191, 345, 443
PaeR7I	CTCGAG	1 cut(s)	40
PagI	TCATGA	2 cut(s)	565, 679
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	2 cut(s)	179, 493
PfeI	GAWTC	3 cut(s)	124, 239, 287
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	5 cut(s)	24, 468, 642, 721, 827
PleI	GAGTC	1 cut(s)	94
PmaCI	CACGTG	1 cut(s)	773
PmlI	CACGTG	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	773
PshBI	ATTAAT	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	518
PspCI	CACGTG	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	5 cut(s)	21, 50, 191, 345, 443
PspPI	GGNCC	3 cut(s)	442, 631, 884
RsaI	GTAC	2 cut(s)	601, 820
RsaNI	GTAC	2 cut(s)	600, 819
SaqAI	TTAA	2 cut(s)	648, 726
SatI	GCNGC	5 cut(s)	23, 467, 641, 720, 826
Sau3AI	GATC	5 cut(s)	250, 271, 379, 682, 778
Sau96I	GGNCC	3 cut(s)	442, 631, 884
ScaI	AGTACT	1 cut(s)	820
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	2 cut(s)	76, 346
SfaNI	GCATC	2 cut(s)	522, 699
SfcI	CTRYAG	2 cut(s)	504, 706
Sfr274I	CTCGAG	1 cut(s)	40
SinI	GGWCC	2 cut(s)	442, 631
SlaI	CTCGAG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SpeI	ACTAGT	2 cut(s)	368, 668
Sse9I	AATT	5 cut(s)	337, 446, 461, 493, 889
SsiI	CCGC	4 cut(s)	23, 297, 806, 825
SspMI	CTAG	4 cut(s)	77, 369, 669, 870
StyD4I	CCNGG	1 cut(s)	518
TaaI	ACNGT	9 cut(s)	19, 66, 313, 406, 505, 613, 656, 731, 749
TaiI	ACGT	2 cut(s)	180, 775
TaqI	TCGA	3 cut(s)	41, 91, 103
TasI	AATT	5 cut(s)	337, 446, 461, 493, 889
TatI	WGTACW	1 cut(s)	818
TauI	GCSGC	2 cut(s)	25, 828
TfiI	GAWTC	3 cut(s)	124, 239, 287
Tru1I	TTAA	2 cut(s)	648, 726
Tru9I	TTAA	2 cut(s)	648, 726
TscAI	CASTG	3 cut(s)	142, 318, 886
TseI	GCWGC	3 cut(s)	466, 640, 719
TspDTI	ATGAA	3 cut(s)	333, 377, 554
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	3 cut(s)	142, 318, 886
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	2 cut(s)	442, 631
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	40
XmnI	GAANNNNTTC	2 cut(s)	179, 493
XspI	CTAG	4 cut(s)	77, 369, 669, 870
ZrmI	AGTACT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.