Rorug06G0417700

WUSCHEL-related homeobox

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
55696634 .. 55697369
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0417700.1

Sequence Viewer

Length: 384 bp
ATGGGGTTGCCACCTGTGTTGATGATTGAGGAGGTTGTGTACATGGTTGGTTGCATGTTGGGTGAGGTACTCTTCCTTGATAAGACTGGAATACGTCGAGGGATGCAGGCCAAAGTCCAAATCCTGCATAATATTGGGGTGTCGCTTGATTGCAAGAATGGCAGTGGCTCTCTGCTGTTGACTTCTGGAGGAGGAGCAGATGGTGGTAGGTGGCGCATTATGGGGGCCACTAATGCTCGTGCTGCTGCAGGAACGCAGGCTGCTATTAATGAGAATGCAATGGTGACAACCCTGGAGGAGGTGGCGCCAGTGTTTGGAGTTAAATATAGGGCGGAGGGGGAGTTGTTGACCTATGCCAAAAGTCCTAAACAAGTGAGTTGTTAA

Protein Analysis

127

Amino Acids

13.37

Weight (kDa)

7.7

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015046)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AccB7I CCANNNNNTGG 1 cut(s) 314
AciI CCGC 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 2 cut(s) 41, 69
AfiI CCNNNNNNNGG 2 cut(s) 298, 314
AjnI CCWGG 1 cut(s) 291
AoxI GGCC 2 cut(s) 108, 225
ApeKI GCWGC 3 cut(s) 242, 245, 260
AseI ATTAAT 1 cut(s) 267
AspLEI GCGC 2 cut(s) 216, 307
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 74, 295
BanI GGYRCC 1 cut(s) 304
BauI CACGAG 1 cut(s) 237
BbvI GCAGC 3 cut(s) 229, 232, 247
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 3 cut(s) 243, 246, 261
BlsI GCNGC 3 cut(s) 244, 247, 262
Bme1390I CCNGG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 226, 306
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 93
BpmI CTGGAG 2 cut(s) 207, 314
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 291
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 326, 356
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 314
Bse1I ACTGG 2 cut(s) 91, 308
Bse3DI GCAATG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 298, 314
BseMI GCAATG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 91, 308
BseRI GAGGAG 4 cut(s) 44, 204, 207, 311
BseXI GCAGC 3 cut(s) 229, 232, 247
BshFI GGCC 2 cut(s) 110, 227
BshNI GGYRCC 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 298, 314
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 2 cut(s) 110, 227
Bsp1407I TGTACA 1 cut(s) 39
BspACI CCGC 1 cut(s) 332
BspANI GGCC 2 cut(s) 110, 227
BspLI GGNNCC 2 cut(s) 226, 306
BspMAI CTGCAG 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 285
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 2 cut(s) 91, 308
BssECI CCNNGG 1 cut(s) 291
BssNI GRCGYC 1 cut(s) 305
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 108, 258
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 2 cut(s) 216, 307
BstMWI GCNNNNNNNGC 3 cut(s) 159, 233, 242
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 229, 232, 247
BsuRI GGCC 2 cut(s) 110, 227
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 169, 315
Cac8I GCNNGC 2 cut(s) 108, 258
CfoI GCGC 2 cut(s) 216, 307
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 2 cut(s) 40, 68
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 2 cut(s) 43, 55
CviJI RGCY 4 cut(s) 110, 168, 227, 260
CviKI_1 RGCY 4 cut(s) 110, 168, 227, 260
CviQI GTAC 2 cut(s) 40, 68
DinI GGCGCC 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 1 cut(s) 347
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
FaeI CATG 2 cut(s) 46, 58
FaiI YATR 6 cut(s) 44, 56, 129, 221, 327, 354
FatI CATG 2 cut(s) 42, 54
Fnu4HI GCNGC 3 cut(s) 243, 246, 261
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 3 cut(s) 243, 246, 261
GlaI GCGC 2 cut(s) 215, 306
GluI GCNGC 3 cut(s) 243, 246, 261
GsuI CTGGAG 2 cut(s) 207, 314
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 2 cut(s) 110, 227
HhaI GCGC 2 cut(s) 216, 307
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 2 cut(s) 46, 58
Hin6I GCGC 2 cut(s) 214, 305
HinP1I GCGC 2 cut(s) 214, 305
HincII GTYRAC 2 cut(s) 180, 348
HindII GTYRAC 2 cut(s) 180, 348
HphI GGTGA 2 cut(s) 74, 295
Hpy166II GTNNAC 3 cut(s) 40, 180, 348
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 3 cut(s) 40, 180, 348
Hpy99I CGWCG 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 6 cut(s) 54, 106, 127, 153, 248, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 233, 242
HpySE526I ACGT 1 cut(s) 94
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 2 cut(s) 46, 58
HspAI GCGC 2 cut(s) 214, 305
KasI GGCGCC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 194
Lsp1109I GCAGC 3 cut(s) 229, 232, 247
LweI GCATC 1 cut(s) 93
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 283
MboII GAAGA 1 cut(s) 64
Mly113I GGCGCC 1 cut(s) 305
MnlI CCTC 9 cut(s) 22, 25, 58, 92, 182, 185, 289, 292, 328
MseI TTAA 3 cut(s) 267, 321, 382
MspR9I CCNGG 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 159, 233, 242
NarI GGCGCC 1 cut(s) 305
NlaIII CATG 2 cut(s) 46, 58
NlaIV GGNNCC 2 cut(s) 226, 306
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 1 cut(s) 58
PctI GAATGC 1 cut(s) 280
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 3 cut(s) 244, 247, 262
PluTI GGCGCC 1 cut(s) 308
PshBI ATTAAT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 226, 306
PspPI GGNCC 1 cut(s) 225
PstI CTGCAG 1 cut(s) 250
RsaI GTAC 2 cut(s) 41, 69
RsaNI GTAC 2 cut(s) 40, 68
SaqAI TTAA 3 cut(s) 267, 321, 382
SatI GCNGC 3 cut(s) 243, 246, 261
Sau96I GGNCC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 293
SetI ASST 7 cut(s) 16, 36, 69, 97, 212, 303, 353
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 246
SfoI GGCGCC 1 cut(s) 306
SsiI CCGC 1 cut(s) 332
SspDI GGCGCC 1 cut(s) 304
SspI AATATT 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 291
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 97
TatI WGTACW 1 cut(s) 39
Tru1I TTAA 3 cut(s) 267, 321, 382
Tru9I TTAA 3 cut(s) 267, 321, 382
TscAI CASTG 2 cut(s) 169, 315
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 3 cut(s) 242, 245, 260
Tsp45I GTSAC 1 cut(s) 283
TspRI CASTG 2 cut(s) 169, 315
Van91I CCANNNNNTGG 1 cut(s) 314
VspI ATTAAT 1 cut(s) 267
XagI CCTNNNNNAGG 1 cut(s) 296
XceI RCATGY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.