AT3G19090

Domain in the RNA-binding Lupus La protein; unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005397
Physical Location & Seq
Forward (+)
6601279 .. 6604010
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19090.2

Sequence Viewer

Length: 1368 bp
ATGGCGCAGATGCAGCGAGAAGAAGTAGAGTCCGTCACGACGGAGAAGAAAAGATTAGACGGAGGCGGTGGATCTTCCGGCGCTCAGGCAACGGCGTTCAAATTCAACGCTCAAGCGCCGGAATTTGTACCGCGATCACATACCACCGCACCAGCACCGCAGGTTTCTCCTGTCTCCGGTTACTTTTATCCTTGTTTTCATTACAACGGTGGTTGCATAGGAGGATGTGGCGGCGGAGTCTGCGGTGGTGGAGGGACCGGCGTTGGTACTCAGTCGTCGGATTGGATCTACGTGGGAGGAGGAGATCCTACTGCTCAGCATCAACATGTTCATGATCCAGCGGCTGCGTTTTACATTTCGAATCCGGCGGTTCAGTTTCCGGCTAGTCAGAACTCGTCTTCTTCGTCGAAGAATCTGCTTTCCGATGATCTCCGCCTTAAGATCGTCAAACAGGTTGAGTACCAGTTTACGGACATGAGTCTCCTAGCCAACGAGTCCATTTCAAAGCATATAAGCAAAGACCCTGAAGGTTATGTGCCCGTATCCTATATCGCTTCGACCAAGAAGATCAAGGCTTTAACGAGTAATCACCACCTAGTTTCACTTGCTCTACGCTCCTCTTCAAAACTTGTTGTGAGTGAAGACGGCAAGAAAGTTAAGCGTACAAGTCAATTTACTGATAGAGACAGAGAGGAATTGCAGGGCCGGACTGTCGTTGCAGAGAATTTGCCAGATGATCATTCTTACCAGAACCTTGAGAAGATCTTTGGAGTTGTTGGAAACGTCAAAGCGATTCGTATATGTCATCCTCCAGAATCCAACTCGTCTCGTCCAAAAGGCGATTTCTTGATGAGCAACAAAATTCACGCCCTTATCGAGTATGACAACACTGTTATCGCGGACAAAGCAGTAGAGAAGCTAAACGATGAAAGAAACTGGAGGAAAGGGCTTCGTGTGAGGCTGCTTCTTAGATGCTCGCCAAAATCGGTGCTCAAGAACCGAAGAAACTTCGATGGAATCCTCATCGATGATGAACTCCCTTCTTATGAATCAGGAGAAGACTCTCCGCGTCTCCATTTAACCGAATCACAGCTTGATAACGATGGTGATGACAACAATGTTGGTGGACTGTGGGGTAAAGGGAGAGGAAAAGGACGAGGACGATCCCCAAGAAGCTACGCAGTAGGAGGAGGAGGACGTAGCTTCGGGATTGGGCTCGGAGTCAGCCTCGGGATACCCAGCCTGGGGTCACACGAATCTTCGTCTCCTAAAACAGCAACAAAGGGACCAAGAATGCCTGATGGAACCAGAGGCTTCACCATGGGACGTGGCAAACCTTCCATCTCACTCTCACCTAACAATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

455

Amino Acids

48.96

Weight (kDa)

9.02

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 148 - 205 2.7e-15 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccII CGCG 3 cut(s) 133, 899, 1069
AclWI GGATC 5 cut(s) 79, 293, 299, 329, 1158
AcsI RAATTY 4 cut(s) 101, 122, 724, 861
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 4 cut(s) 129, 268, 461, 664
AfiI CCNNNNNNNGG 4 cut(s) 176, 469, 1244, 1245
AflII CTTAAG 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 4 cut(s) 100, 106, 504, 624
AjiI CACGTC 1 cut(s) 1328
AjnI CCWGG 1 cut(s) 1242
AluBI AGCT 4 cut(s) 919, 1093, 1176, 1203
AluI AGCT 4 cut(s) 919, 1093, 1176, 1203
Alw21I GWGCWC 1 cut(s) 993
Alw26I GTCTC 6 cut(s) 178, 485, 678, 831, 1076, 1269
AlwI GGATC 5 cut(s) 79, 293, 299, 329, 1158
AlwNI CAGNNNCTG 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 1229
AoxI GGCC 1 cut(s) 703
ApeKI GCWGC 3 cut(s) 13, 344, 961
ApoI RAATTY 4 cut(s) 101, 122, 724, 861
AspLEI GCGC 3 cut(s) 7, 83, 118
AspS9I GGNCC 3 cut(s) 255, 703, 1286
AsuHPI GGTGA 4 cut(s) 581, 1118, 1309, 1344
AsuII TTCGAA 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 1229
AvaII GGWCC 2 cut(s) 255, 1286
BaeGI GKGCMC 1 cut(s) 540
BanII GRGCYC 1 cut(s) 1218
BbsI GAAGAC 3 cut(s) 390, 648, 1065
Bbv12I GWGCWC 1 cut(s) 993
BbvI GCAGC 3 cut(s) 25, 331, 948
BccI CCATC 4 cut(s) 1007, 1097, 1295, 1349
BceAI ACGGC 2 cut(s) 108, 661
BcgI CGANNNNNNTGC 2 cut(s) 397, 431
BciT130I CCWGG 1 cut(s) 1244
BciVI GTATCC 2 cut(s) 553, 1227
BclI TGATCA 1 cut(s) 736
BcoDI GTCTC 6 cut(s) 178, 485, 678, 831, 1076, 1269
BfaI CTAG 3 cut(s) 384, 485, 596
BfoI RGCGCY 2 cut(s) 84, 119
BfrI CTTAAG 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 151
BfuI GTATCC 2 cut(s) 553, 1227
BglII AGATCT 1 cut(s) 762
BisI GCNGC 5 cut(s) 14, 232, 342, 345, 962
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 5 cut(s) 15, 233, 343, 346, 963
Bme1390I CCNGG 1 cut(s) 1244
Bme18I GGWCC 2 cut(s) 255, 1286
BmeT110I CYCGRG 1 cut(s) 1229
BmgBI CACGTC 1 cut(s) 1328
BmgT120I GGNCC 3 cut(s) 255, 703, 1286
BmiI GGNNCC 3 cut(s) 256, 1287, 1306
BmrFI CCNGG 1 cut(s) 1244
BmsI GCATC 2 cut(s) 328, 962
BoxI GACNNNNGTC 1 cut(s) 477
BpiI GAAGAC 3 cut(s) 390, 648, 1065
BplI GAGNNNNNCTC 2 cut(s) 1212, 1244
BpmI CTGGAG 2 cut(s) 795, 958
Bpu10I CCTNAGC 1 cut(s) 84
Bpu1102I GCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 359
BpuEI CTTGAG 3 cut(s) 96, 776, 977
Bsa29I ATCGAT 1 cut(s) 1026
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 3 cut(s) 1228, 1243, 1320
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 469, 1244, 1245
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 463, 941
BseBI CCWGG 1 cut(s) 1244
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 3 cut(s) 1228, 1243, 1320
BseGI GGATG 2 cut(s) 230, 805
BseLI CCNNNNNNNGG 4 cut(s) 176, 469, 1244, 1245
BseMII CTCAG 3 cut(s) 98, 284, 329
BseNI ACTGG 2 cut(s) 463, 941
BseRI GAGGAG 5 cut(s) 312, 315, 607, 1203, 1206
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 3 cut(s) 25, 331, 948
BseYI CCCAGC 1 cut(s) 1238
Bsh1236I CGCG 3 cut(s) 133, 899, 1069
BshFI GGCC 1 cut(s) 705
BshVI ATCGAT 1 cut(s) 1026
BsiHKAI GWGCWC 1 cut(s) 993
BsiHKCI CYCGRG 1 cut(s) 1229
BsiSI CCGG 7 cut(s) 78, 119, 177, 258, 365, 380, 706
BslFI GGGAC 3 cut(s) 268, 1299, 1338
BslI CCNNNNNNNGG 4 cut(s) 176, 469, 1244, 1245
BsmAI GTCTC 6 cut(s) 178, 485, 678, 831, 1076, 1269
BsmBI CGTCTC 3 cut(s) 831, 1076, 1269
BsmFI GGGAC 3 cut(s) 268, 1299, 1338
BsmI GAATGC 1 cut(s) 1299
BsnI GGCC 1 cut(s) 705
BsoBI CYCGRG 1 cut(s) 1229
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 540, 993, 1218
Bsp1720I GCTNAGC 1 cut(s) 315
Bsp19I CCATGG 1 cut(s) 1320
BspANI GGCC 1 cut(s) 705
BspCNI CTCAG 3 cut(s) 97, 283, 328
BspDI ATCGAT 1 cut(s) 1026
BspFNI CGCG 3 cut(s) 133, 899, 1069
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 256, 1287, 1306
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 5 cut(s) 79, 293, 299, 329, 1158
BspT104I TTCGAA 1 cut(s) 359
BspTI CTTAAG 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 2 cut(s) 463, 941
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 1228, 1243, 1320
BssT1I CCWWGG 1 cut(s) 1320
Bst2UI CCWGG 1 cut(s) 1244
Bst4CI ACNGT 4 cut(s) 209, 712, 892, 1131
Bst6I CTCTTC 1 cut(s) 625
BstAFI CTTAAG 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 292
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 977
BstDEI CTNAG 4 cut(s) 84, 270, 315, 968
BstDSI CCRYGG 1 cut(s) 1320
BstF5I GGATG 2 cut(s) 230, 805
BstFNI CGCG 3 cut(s) 133, 899, 1069
BstH2I RGCGCY 2 cut(s) 84, 119
BstHHI GCGC 3 cut(s) 7, 83, 118
BstMAI GTCTC 6 cut(s) 178, 485, 678, 831, 1076, 1269
BstMWI GCNNNNNNNGC 3 cut(s) 13, 240, 905
BstNI CCWGG 1 cut(s) 1244
BstNSI RCATGY 1 cut(s) 329
BstPAI GACNNNNGTC 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 1242
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 3 cut(s) 133, 899, 1069
BstV1I GCAGC 3 cut(s) 25, 331, 948
BstV2I GAAGAC 3 cut(s) 390, 648, 1065
BstX2I RGATCY 4 cut(s) 71, 285, 304, 762
BstYI RGATCY 4 cut(s) 71, 285, 304, 762
Bsu15I ATCGAT 1 cut(s) 1026
BsuI GTATCC 2 cut(s) 553, 1227
BsuRI GGCC 1 cut(s) 705
BsuTUI ATCGAT 1 cut(s) 1026
BtgI CCRYGG 1 cut(s) 1320
BtrI CACGTC 1 cut(s) 1328
BtsCI GGATG 2 cut(s) 230, 805
BtsIMutI CAGTG 1 cut(s) 888
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 977
CaiI CAGNNNCTG 1 cut(s) 344
CciI TCATGA 1 cut(s) 331
CfoI GCGC 3 cut(s) 7, 83, 118
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 3 cut(s) 255, 703, 1286
ClaI ATCGAT 1 cut(s) 1026
CseI GACGC 1 cut(s) 1058
Csp6I GTAC 4 cut(s) 128, 267, 460, 663
CspCI CAANNNNNGTGG 2 cut(s) 1105, 1140
CviAII CATG 4 cut(s) 326, 332, 475, 1321
CviQI GTAC 4 cut(s) 128, 267, 460, 663
DdeI CTNAG 4 cut(s) 84, 270, 315, 968
Eam1104I CTCTTC 1 cut(s) 625
EarI CTCTTC 1 cut(s) 625
EciI GGCGGA 2 cut(s) 249, 422
Eco130I CCWWGG 1 cut(s) 1320
Eco24I GRGCYC 1 cut(s) 1218
Eco47I GGWCC 2 cut(s) 255, 1286
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 1229
EcoRII CCWGG 1 cut(s) 1242
EcoT14I CCWWGG 1 cut(s) 1320
EcoT38I GRGCYC 1 cut(s) 1218
ErhI CCWWGG 1 cut(s) 1320
Esp3I CGTCTC 3 cut(s) 831, 1076, 1269
FaeI CATG 4 cut(s) 329, 335, 478, 1324
FaqI GGGAC 3 cut(s) 268, 1299, 1338
FatI CATG 4 cut(s) 325, 331, 474, 1320
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 5 cut(s) 14, 232, 342, 345, 962
FokI GGATG 2 cut(s) 237, 792
FriOI GRGCYC 1 cut(s) 1218
Fsp4HI GCNGC 5 cut(s) 14, 232, 342, 345, 962
FspBI CTAG 3 cut(s) 384, 485, 596
GlaI GCGC 3 cut(s) 6, 82, 117
GluI GCNGC 5 cut(s) 14, 232, 342, 345, 962
GsaI CCCAGC 1 cut(s) 1242
GsuI CTGGAG 2 cut(s) 795, 958
HaeII RGCGCY 2 cut(s) 84, 119
HaeIII GGCC 1 cut(s) 705
HapII CCGG 7 cut(s) 78, 119, 177, 258, 365, 380, 706
HgaI GACGC 1 cut(s) 1058
HhaI GCGC 3 cut(s) 7, 83, 118
Hin1II CATG 4 cut(s) 329, 335, 478, 1324
Hin6I GCGC 3 cut(s) 5, 81, 116
HinP1I GCGC 3 cut(s) 5, 81, 116
HpaII CCGG 7 cut(s) 78, 119, 177, 258, 365, 380, 706
HphI GGTGA 4 cut(s) 581, 1118, 1309, 1344
Hpy166II GTNNAC 2 cut(s) 468, 1127
Hpy188I TCNGA 4 cut(s) 280, 390, 424, 1220
Hpy188III TCNNGA 8 cut(s) 37, 332, 812, 847, 994, 1053, 1207, 1231
Hpy8I GTNNAC 2 cut(s) 468, 1127
Hpy99I CGWCG 3 cut(s) 43, 280, 409
HpyAV CCTTC 3 cut(s) 521, 1050, 1347
HpyCH4III ACNGT 4 cut(s) 209, 712, 892, 1131
HpyCH4IV ACGT 4 cut(s) 291, 783, 1198, 1327
HpyCH4V TGCA 4 cut(s) 13, 216, 700, 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 240, 905
HpyF3I CTNAG 4 cut(s) 84, 270, 315, 968
HpySE526I ACGT 4 cut(s) 291, 783, 1198, 1327
Hsp92II CATG 4 cut(s) 329, 335, 478, 1324
HspAI GCGC 3 cut(s) 5, 81, 116
Ksp22I TGATCA 1 cut(s) 736
LmnI GCTCC 1 cut(s) 620
Lsp1109I GCAGC 3 cut(s) 25, 331, 948
LweI GCATC 2 cut(s) 328, 962
MaeI CTAG 3 cut(s) 384, 485, 596
MaeII ACGT 4 cut(s) 291, 783, 1198, 1327
MaeIII GTNAC 3 cut(s) 34, 179, 1248
MflI RGATCY 4 cut(s) 71, 285, 304, 762
MhlI GDGCHC 3 cut(s) 540, 993, 1218
MluCI AATT 6 cut(s) 101, 122, 671, 695, 724, 861
MlyI GAGTC 6 cut(s) 38, 246, 487, 503, 1055, 1230
MmeI TCCRAC 3 cut(s) 258, 757, 843
MseI TTAA 4 cut(s) 438, 578, 657, 1079
MslI CAYNNNNRTG 2 cut(s) 324, 330
MspA1I CMGCKG 1 cut(s) 341
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 7 cut(s) 78, 119, 177, 258, 365, 380, 706
MspR9I CCNGG 1 cut(s) 1244
Mva1269I GAATGC 1 cut(s) 1299
MvaI CCWGG 1 cut(s) 1244
MvnI CGCG 3 cut(s) 133, 899, 1069
MwoI GCNNNNNNNGC 3 cut(s) 13, 240, 905
NcoI CCATGG 1 cut(s) 1320
NlaIII CATG 4 cut(s) 329, 335, 478, 1324
NlaIV GGNNCC 3 cut(s) 256, 1287, 1306
NmuCI GTSAC 2 cut(s) 34, 1248
NspI RCATGY 1 cut(s) 329
NspV TTCGAA 1 cut(s) 359
PagI TCATGA 1 cut(s) 331
PciI ACATGT 1 cut(s) 325
PcsI WCGNNNNNNNCGW 2 cut(s) 401, 873
PctI GAATGC 1 cut(s) 1299
PfeI GAWTC 8 cut(s) 361, 412, 793, 815, 1017, 1049, 1085, 1256
PkrI GCNGC 5 cut(s) 15, 233, 343, 346, 963
PleI GAGTC 6 cut(s) 37, 245, 486, 502, 1055, 1229
PpsI GAGTC 6 cut(s) 37, 245, 486, 502, 1055, 1229
Ppu21I YACGTR 1 cut(s) 292
PscI ACATGT 1 cut(s) 325
PshAI GACNNNNGTC 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 1242
PspFI CCCAGC 1 cut(s) 1238
PspGI CCWGG 1 cut(s) 1242
PspN4I GGNNCC 3 cut(s) 256, 1287, 1306
PspPI GGNCC 3 cut(s) 255, 703, 1286
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 4 cut(s) 71, 285, 304, 762
RsaI GTAC 4 cut(s) 129, 268, 461, 664
RsaNI GTAC 4 cut(s) 128, 267, 460, 663
RseI CAYNNNNRTG 2 cut(s) 324, 330
SaqAI TTAA 4 cut(s) 438, 578, 657, 1079
SatI GCNGC 5 cut(s) 14, 232, 342, 345, 962
Sau96I GGNCC 3 cut(s) 255, 703, 1286
SchI GAGTC 6 cut(s) 38, 246, 487, 503, 1055, 1230
ScrFI CCNGG 1 cut(s) 1244
SduI GDGCHC 3 cut(s) 540, 993, 1218
SfaNI GCATC 2 cut(s) 328, 962
SfuI TTCGAA 1 cut(s) 359
SinI GGWCC 2 cut(s) 255, 1286
SmiMI CAYNNNNRTG 2 cut(s) 324, 330
SmlI CTYRAG 4 cut(s) 111, 437, 755, 992
SmoI CTYRAG 4 cut(s) 111, 437, 755, 992
Sse9I AATT 6 cut(s) 101, 122, 671, 695, 724, 861
SspMI CTAG 3 cut(s) 384, 485, 596
StyD4I CCNGG 1 cut(s) 1242
StyI CCWWGG 1 cut(s) 1320
TaaI ACNGT 4 cut(s) 209, 712, 892, 1131
TaiI ACGT 4 cut(s) 294, 786, 1201, 1330
TaqI TCGA 6 cut(s) 359, 407, 557, 876, 1011, 1026
TasI AATT 6 cut(s) 101, 122, 671, 695, 724, 861
TauI GCSGC 2 cut(s) 234, 344
TfiI GAWTC 8 cut(s) 361, 412, 793, 815, 1017, 1049, 1085, 1256
Tru1I TTAA 4 cut(s) 438, 578, 657, 1079
Tru9I TTAA 4 cut(s) 438, 578, 657, 1079
TscAI CASTG 1 cut(s) 895
TseFI GTSAC 2 cut(s) 34, 1248
TseI GCWGC 3 cut(s) 13, 344, 961
Tsp45I GTSAC 2 cut(s) 34, 1248
TspDTI ATGAA 5 cut(s) 188, 320, 942, 1047, 1062
TspGWI ACGGA 4 cut(s) 22, 56, 75, 485
TspRI CASTG 1 cut(s) 895
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 255, 1286
XapI RAATTY 4 cut(s) 101, 122, 724, 861
XceI RCATGY 1 cut(s) 329
XspI CTAG 3 cut(s) 384, 485, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.