Rh2BG446100

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005397
Physical Location & Seq
Forward (+)
63048618 .. 63051461
2844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG446100.1

Sequence Viewer

Length: 390 bp
ATGGGTAATGGCAATGGTGCCATAGACAATGTAGATGATGCCGTAGTCGAGGAGGAGAGAGACCTGATTTTGTCTGTCATTGATGATGAACATCTTGAAATTATTGGTTACAAATTCTTTCCTCAAAGTGAAGAATCGATTCACCTTGACCAGGTATGGGGACTTCGTTTCGAGTTTATTGATGGTGAAGAAGAGGTTGTGAAGGCCCGGGGATCCAAGAAAGGATGGGCATGGGGACGTGGCGCGAGCCAGAGTGGACGTGGCCTGATTGCTCCATCTCCGCAATCAAGCTGTGCCATACAGTGTGAAGCATCTGCCAAACCAAATACAAAGGGCCCGAGAATGCCAGACGGGACTAGGGGTTTCACCATGGGAAGAGGCAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

129

Amino Acids

14.03

Weight (kDa)

4.92

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 1 cut(s) 245
AciI CCGC 1 cut(s) 281
AclWI GGATC 2 cut(s) 207, 220
AcsI RAATTY 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 151, 157
AgsI TTSAA 1 cut(s) 98
AjiI CACGTC 2 cut(s) 239, 260
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 2 cut(s) 207, 220
Ama87I CYCGRG 2 cut(s) 207, 337
AoxI GGCC 3 cut(s) 204, 262, 334
ApaI GGGCCC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 3 cut(s) 205, 334, 335
AsuC2I CCSGG 2 cut(s) 208, 209
AsuHPI GGTGA 3 cut(s) 134, 197, 358
AvaI CYCGRG 2 cut(s) 207, 337
BaeGI GKGCMC 1 cut(s) 338
BamHI GGATCC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 338
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BccI CCATC 3 cut(s) 176, 219, 283
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 2 cut(s) 208, 209
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 357
Bme1390I CCNGG 3 cut(s) 152, 208, 209
BmeT110I CYCGRG 2 cut(s) 207, 337
BmgBI CACGTC 2 cut(s) 239, 260
BmgT120I GGNCC 3 cut(s) 205, 334, 335
BmiI GGNNCC 3 cut(s) 19, 214, 336
BmrFI CCNGG 3 cut(s) 152, 208, 209
BmsI GCATC 2 cut(s) 28, 320
BpuMI CCSGG 2 cut(s) 208, 209
Bsa29I ATCGAT 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 3 cut(s) 207, 208, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 157
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 207, 208, 369
BseGI GGATG 1 cut(s) 230
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 151, 157
BseMI GCAATG 1 cut(s) 19
BseRI GAGGAG 2 cut(s) 65, 68
BseSI GKGCMC 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 3 cut(s) 206, 264, 336
BshNI GGYRCC 1 cut(s) 17
BshVI ATCGAT 1 cut(s) 137
BsiHKCI CYCGRG 2 cut(s) 207, 337
BsiSI CCGG 1 cut(s) 208
BslFI GGGAC 3 cut(s) 174, 249, 367
BslI CCNNNNNNNGG 2 cut(s) 151, 157
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 3 cut(s) 174, 249, 367
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 3 cut(s) 206, 264, 336
Bso31I GGTCTC 1 cut(s) 54
BsoBI CYCGRG 2 cut(s) 207, 337
Bsp120I GGGCCC 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 1 cut(s) 212
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 1 cut(s) 281
BspANI GGCC 3 cut(s) 206, 264, 336
BspDI ATCGAT 1 cut(s) 137
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 3 cut(s) 19, 214, 336
BspPI GGATC 2 cut(s) 207, 220
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 19
BssECI CCNNGG 3 cut(s) 207, 208, 369
BssMI GATC 1 cut(s) 212
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 2 cut(s) 186, 370
BstC8I GCNNGC 2 cut(s) 247, 383
BstDSI CCRYGG 1 cut(s) 369
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 230
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 3 cut(s) 150, 206, 207
BstSLI GKGCMC 1 cut(s) 338
BstUI CGCG 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
Bsu15I ATCGAT 1 cut(s) 137
BsuRI GGCC 3 cut(s) 206, 264, 336
BsuTUI ATCGAT 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 369
BtrI CACGTC 2 cut(s) 239, 260
BtsCI GGATG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 2 cut(s) 247, 383
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 3 cut(s) 205, 334, 335
Cfr9I CCCGGG 1 cut(s) 207
ClaI ATCGAT 1 cut(s) 137
CsiI ACCWGGT 1 cut(s) 150
CviAII CATG 2 cut(s) 231, 370
CviJI RGCY 6 cut(s) 206, 249, 264, 291, 336, 385
CviKI_1 RGCY 6 cut(s) 206, 249, 264, 291, 336, 385
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 186, 370
EarI CTCTTC 2 cut(s) 186, 370
Eco130I CCWWGG 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 54
Eco88I CYCGRG 2 cut(s) 207, 337
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 2 cut(s) 234, 373
FaiI YATR 5 cut(s) 23, 157, 232, 299, 371
FaqI GGGAC 3 cut(s) 174, 249, 367
FatI CATG 2 cut(s) 230, 369
FokI GGATG 1 cut(s) 237
FriOI GRGCYC 1 cut(s) 338
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 244
HaeIII GGCC 3 cut(s) 206, 264, 336
HapII CCGG 1 cut(s) 208
HhaI GCGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 234, 373
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 2 cut(s) 134, 139
HpaII CCGG 1 cut(s) 208
HphI GGTGA 3 cut(s) 134, 197, 358
Hpy166II GTNNAC 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4IV ACGT 2 cut(s) 238, 259
HpySE526I ACGT 2 cut(s) 238, 259
Hsp92II CATG 2 cut(s) 234, 373
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 7 cut(s) 77, 137, 164, 221, 263, 278, 360
LweI GCATC 2 cut(s) 28, 320
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 1 cut(s) 357
MaeII ACGT 2 cut(s) 238, 259
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 4 cut(s) 143, 200, 203, 387
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 2 cut(s) 99, 113
MnlI CCTC 5 cut(s) 43, 46, 132, 187, 371
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 1 cut(s) 388
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 3 cut(s) 152, 208, 209
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 245
NciI CCSGG 2 cut(s) 208, 209
NcoI CCATGG 1 cut(s) 369
NdeII GATC 1 cut(s) 212
NlaIII CATG 2 cut(s) 234, 373
NlaIV GGNNCC 3 cut(s) 19, 214, 336
PctI GAATGC 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 134, 139
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 19, 214, 336
PspOMI GGGCCC 1 cut(s) 334
PspPI GGNCC 3 cut(s) 205, 334, 335
PsuI RGATCY 1 cut(s) 212
SaqAI TTAA 1 cut(s) 388
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 3 cut(s) 205, 334, 335
ScrFI CCNGG 3 cut(s) 152, 208, 209
SduI GDGCHC 1 cut(s) 338
SetI ASST 7 cut(s) 66, 147, 156, 198, 241, 262, 293
SexAI ACCWGGT 1 cut(s) 150
SfaNI GCATC 2 cut(s) 28, 320
SmaI CCCGGG 1 cut(s) 209
Sse9I AATT 2 cut(s) 99, 113
SsiI CCGC 1 cut(s) 281
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 3 cut(s) 150, 206, 207
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 303
TaiI ACGT 2 cut(s) 241, 262
TaqI TCGA 3 cut(s) 48, 137, 171
TasI AATT 2 cut(s) 99, 113
TfiI GAWTC 2 cut(s) 134, 139
Tru1I TTAA 1 cut(s) 388
Tru9I TTAA 1 cut(s) 388
TscAI CASTG 1 cut(s) 308
TspDTI ATGAA 1 cut(s) 102
TspMI CCCGGG 1 cut(s) 207
TspRI CASTG 1 cut(s) 308
XagI CCTNNNNNAGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmaI CCCGGG 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.