MD10G1089400.v1.1

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0005397
Physical Location & Seq
Forward (+)
13309402 .. 13313085
3684 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1089400.v1.1.491

Sequence Viewer

Length: 1242 bp
ATGGCACAAGCACAACCACGTGGGGAAAAGCCCCAAGAGGTCCCAGAAATGGAGGTGAAAGAAAACCCAAGAAGTCCATCCTTCACATTCAATGCACAGGCACCTGAATTTGTGCCAAGATCACATGCCCAGATGCCCATTTCTGGTTATTTCTATCCCTGTTTTCACTTTCTTGGTGACAGTACTGCTTCCCCTGATTGGTTTTACATTGGGGACCAAGAATTGCCTCCTTACTTGATCTCCAATAATCCCAATATCAATCCGCTTTCCAATCGGTCCAAGAACGCGCTCCCAGATGATCTTCAACAGAAGATCATTAAGCAGGTGGAGTACCAGTTCAGTGACATGAGTCTGCTGGCAAATGAATCCTTAGCGAAACACATAAGTAAAGATCCTGAAGGATTTGTTCCAATATCTGTTATTGCCTCCACCAAGAAAATGAAGTCACTTATTAGTAACAACCATATGCTCTCGCAAGCACTGCGGTCTTCTTTAAAGCTTGTTGTAAGTGAGGATGGCAAGAAGGTTAGACGTAAGCATCCTTTTACTGAAAAGGACAAAGAGGAATTGCAGTCTCGCACGGTTGTGGCAGAGAATTTGCCTGAAGATCACTCTCATCAAAACCTAGAGAAGATATTCAGTGTGGTTGGAAGCATATTTGCACTTTCTTTCAAGAACAGTGTGAAAACCATCCGAATATGCCATCCCCACGAATCCAATTCTTCCCGCTCCAAAGGCGATTTCATTGTCAGCAACAAGCTGCATGCGCTTTTGGAGTATGAGACAATGGAAATAGCAGAGAGAGCGGTTGATAAGTTGAGCGATGAAAGGAACTGGAGAAAAGGGCTCCGAGTAAGGATGCTGATCAGATGCTCGCCAAAGTCTGTTTTGAAGAGCAGAAAGTCTGATTTCGATGGCATTTTAGAGGATGAAGAACCACCGTATGATTGCGCAGTAGAAACTTCTCACCCAAGCAGCCCTGAATTGGTCATTGATAGTCCTAATGTTGAAGAAAACTCGGCATTGTCCAAGAAAGGACTGGCCTGGGGGCGTGGTAAGGGACGAGGACGCGGGCAGAGCCAGAGCGGGCGTGGCCTGATTGCCCTGTCTCCGCTATCAAGCAGCACCATCCAGTGTGAAGCATCTGCAAAACTGAATTCCAAGGGACCAAGAATGCCGGATGGGACTCGAGGCTTCACCATGGGAAGAGGCAAGCCAGTAAGCGCCATGAATTCGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

414

Amino Acids

46.0

Weight (kDa)

8.89

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 105 - 163 1.1e-17 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 313
Acc16I TGCGCA 1 cut(s) 952
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 100
AccBSI CCGCTC 3 cut(s) 729, 806, 1086
AccII CGCG 2 cut(s) 287, 1071
AciI CCGC 7 cut(s) 263, 484, 727, 806, 1071, 1086, 1112
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 4 cut(s) 107, 595, 1156, 1231
AcuI CTGAAG 2 cut(s) 417, 624
AcvI CACGTG 1 cut(s) 20
AfaI GTAC 2 cut(s) 184, 332
AfiI CCNNNNNNNGG 4 cut(s) 49, 143, 198, 985
AgsI TTSAA 5 cut(s) 91, 305, 673, 892, 1010
AjnI CCWGG 1 cut(s) 1043
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AleI CACNNNNGTG 1 cut(s) 584
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 499, 760
AluI AGCT 2 cut(s) 499, 760
Alw26I GTCTC 3 cut(s) 579, 776, 1113
AlwI GGATC 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 1188
AoxI GGCC 2 cut(s) 1041, 1093
ApeKI GCWGC 3 cut(s) 760, 975, 1122
ApoI RAATTY 4 cut(s) 107, 595, 1156, 1231
Asp700I GAANNNNTTC 1 cut(s) 635
AspLEI GCGC 4 cut(s) 289, 769, 953, 1226
AspS9I GGNCC 4 cut(s) 40, 214, 276, 1166
AsuHPI GGTGA 4 cut(s) 67, 188, 959, 1189
AvaI CYCGRG 1 cut(s) 1188
AvaII GGWCC 4 cut(s) 40, 214, 276, 1166
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 849
BbrPI CACGTG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 3 cut(s) 747, 987, 1134
BccI CCATC 7 cut(s) 85, 509, 698, 711, 908, 1136, 1175
BceAI ACGGC 1 cut(s) 1222
BciT130I CCWGG 1 cut(s) 1045
BclI TGATCA 1 cut(s) 864
BcoDI GTCTC 3 cut(s) 579, 776, 1113
BfaI CTAG 1 cut(s) 626
BfoI RGCGCY 1 cut(s) 1227
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 3 cut(s) 761, 976, 1123
BlsI GCNGC 3 cut(s) 762, 977, 1124
BmcAI AGTACT 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 1045
Bme18I GGWCC 4 cut(s) 40, 214, 276, 1166
BmeT110I CYCGRG 1 cut(s) 1188
BmgT120I GGNCC 4 cut(s) 40, 214, 276, 1166
BmiI GGNNCC 5 cut(s) 42, 102, 215, 848, 1167
BmrFI CCNGG 1 cut(s) 1045
BmsI GCATC 5 cut(s) 123, 547, 849, 860, 1151
BoxI GACNNNNGTC 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 856
Bpu10I CCTNAGC 1 cut(s) 370
BsaAI YACGTR 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 863
BsaJI CCNNGG 3 cut(s) 1044, 1161, 1200
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 320, 350
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 143, 198, 985
Bse1I ACTGG 5 cut(s) 334, 839, 1044, 1132, 1217
Bse8I GATNNNNATC 1 cut(s) 863
BseBI CCWGG 1 cut(s) 1045
BseDI CCNNGG 3 cut(s) 1044, 1161, 1200
BseGI GGATG 9 cut(s) 77, 520, 538, 690, 703, 864, 934, 1128, 1186
BseJI GATNNNNATC 1 cut(s) 863
BseLI CCNNNNNNNGG 4 cut(s) 49, 143, 198, 985
BseNI ACTGG 5 cut(s) 334, 839, 1044, 1132, 1217
BseXI GCAGC 3 cut(s) 747, 987, 1134
Bsh1236I CGCG 2 cut(s) 287, 1071
BshFI GGCC 2 cut(s) 1043, 1095
BshNI GGYRCC 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 1188
BsiSI CCGG 1 cut(s) 1178
BslFI GGGAC 5 cut(s) 26, 227, 1074, 1179, 1198
BslI CCNNNNNNNGG 4 cut(s) 49, 143, 198, 985
BsmAI GTCTC 3 cut(s) 579, 776, 1113
BsmFI GGGAC 5 cut(s) 26, 227, 1074, 1179, 1198
BsmI GAATGC 1 cut(s) 1179
BsnI GGCC 2 cut(s) 1043, 1095
BsoBI CYCGRG 1 cut(s) 1188
Bsp1286I GDGCHC 1 cut(s) 849
Bsp143I GATC 7 cut(s) 119, 237, 298, 312, 391, 607, 864
Bsp19I CCATGG 1 cut(s) 1200
BspACI CCGC 7 cut(s) 263, 484, 727, 806, 1071, 1086, 1112
BspANI GGCC 2 cut(s) 1043, 1095
BspFNI CGCG 2 cut(s) 287, 1071
BspLI GGNNCC 5 cut(s) 42, 102, 215, 848, 1167
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 386
BspQI GCTCTTC 1 cut(s) 887
BspT107I GGYRCC 1 cut(s) 100
BsrBI CCGCTC 3 cut(s) 729, 806, 1086
BsrI ACTGG 5 cut(s) 334, 839, 1044, 1132, 1217
BssECI CCNNGG 3 cut(s) 1044, 1161, 1200
BssMI GATC 7 cut(s) 119, 237, 298, 312, 391, 607, 864
BssT1I CCWWGG 2 cut(s) 1161, 1200
Bst2UI CCWGG 1 cut(s) 1045
Bst4CI ACNGT 4 cut(s) 182, 583, 680, 942
Bst6I CTCTTC 2 cut(s) 887, 1201
BstAPI GCANNNNNTGC 1 cut(s) 481
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 7 cut(s) 357, 477, 765, 875, 1073, 1088, 1214
BstDEI CTNAG 1 cut(s) 370
BstDSI CCRYGG 1 cut(s) 1200
BstF5I GGATG 9 cut(s) 77, 520, 538, 690, 703, 864, 934, 1128, 1186
BstFNI CGCG 2 cut(s) 287, 1071
BstH2I RGCGCY 1 cut(s) 1227
BstHHI GCGC 4 cut(s) 289, 769, 953, 1226
BstKTI GATC 7 cut(s) 122, 240, 301, 315, 394, 610, 867
BstMAI GTCTC 3 cut(s) 579, 776, 1113
BstMBI GATC 7 cut(s) 119, 237, 298, 312, 391, 607, 864
BstMWI GCNNNNNNNGC 6 cut(s) 481, 735, 766, 803, 1077, 1092
BstNI CCWGG 1 cut(s) 1045
BstNSI RCATGY 2 cut(s) 128, 767
BstPAI GACNNNNGTC 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 1043
BstUI CGCG 2 cut(s) 287, 1071
BstV1I GCAGC 3 cut(s) 747, 987, 1134
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 2 cut(s) 1043, 1095
BtgI CCRYGG 1 cut(s) 1200
BtgZI GCGATG 1 cut(s) 837
BtsCI GGATG 9 cut(s) 77, 520, 538, 690, 703, 864, 934, 1128, 1186
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 5 cut(s) 346, 479, 646, 685, 1139
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 7 cut(s) 357, 477, 765, 875, 1073, 1088, 1214
CfoI GCGC 4 cut(s) 289, 769, 953, 1226
Cfr13I GGNCC 4 cut(s) 40, 214, 276, 1166
CseI GACGC 1 cut(s) 1077
Csp6I GTAC 2 cut(s) 183, 331
CviAII CATG 5 cut(s) 125, 346, 764, 1201, 1228
CviQI GTAC 2 cut(s) 183, 331
DdeI CTNAG 1 cut(s) 370
DpnI GATC 7 cut(s) 121, 239, 300, 314, 393, 609, 866
DpnII GATC 7 cut(s) 119, 237, 298, 312, 391, 607, 864
DraI TTTAAA 1 cut(s) 495
Eam1104I CTCTTC 2 cut(s) 887, 1201
EarI CTCTTC 2 cut(s) 887, 1201
Eco130I CCWWGG 2 cut(s) 1161, 1200
Eco24I GRGCYC 1 cut(s) 849
Eco47I GGWCC 4 cut(s) 40, 214, 276, 1166
Eco57I CTGAAG 2 cut(s) 417, 624
Eco72I CACGTG 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 1188
EcoO109I RGGNCCY 1 cut(s) 40
EcoRI GAATTC 2 cut(s) 1156, 1231
EcoRII CCWGG 1 cut(s) 1043
EcoT14I CCWWGG 2 cut(s) 1161, 1200
EcoT38I GRGCYC 1 cut(s) 849
ErhI CCWWGG 2 cut(s) 1161, 1200
FaeI CATG 5 cut(s) 128, 349, 767, 1204, 1231
FaqI GGGAC 5 cut(s) 26, 227, 1074, 1179, 1198
FatI CATG 5 cut(s) 124, 345, 763, 1200, 1227
FauI CCCGC 3 cut(s) 734, 1064, 1079
FauNDI CATATG 1 cut(s) 465
FbaI TGATCA 1 cut(s) 864
Fnu4HI GCNGC 3 cut(s) 761, 976, 1123
FokI GGATG 9 cut(s) 64, 525, 527, 677, 690, 871, 941, 1115, 1193
FriOI GRGCYC 1 cut(s) 849
Fsp4HI GCNGC 3 cut(s) 761, 976, 1123
FspBI CTAG 1 cut(s) 626
FspI TGCGCA 1 cut(s) 952
GlaI GCGC 4 cut(s) 288, 768, 952, 1225
GluI GCNGC 3 cut(s) 761, 976, 1123
GsuI CTGGAG 1 cut(s) 856
HaeII RGCGCY 1 cut(s) 1227
HaeIII GGCC 2 cut(s) 1043, 1095
HapII CCGG 1 cut(s) 1178
HgaI GACGC 1 cut(s) 1077
HhaI GCGC 4 cut(s) 289, 769, 953, 1226
Hin1II CATG 5 cut(s) 128, 349, 767, 1204, 1231
Hin6I GCGC 4 cut(s) 287, 767, 951, 1224
HinP1I GCGC 4 cut(s) 287, 767, 951, 1224
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 4 cut(s) 349, 365, 713, 1186
HpaII CCGG 1 cut(s) 1178
HphI GGTGA 4 cut(s) 67, 188, 959, 1189
Hpy188I TCNGA 4 cut(s) 695, 851, 869, 907
Hpy188III TCNNGA 2 cut(s) 395, 673
HpyAV CCTTC 3 cut(s) 91, 392, 517
HpyCH4III ACNGT 4 cut(s) 182, 583, 680, 942
HpyCH4IV ACGT 2 cut(s) 19, 532
HpyCH4V TGCA 5 cut(s) 95, 571, 662, 763, 1148
HpyF10VI GCNNNNNNNGC 6 cut(s) 481, 735, 766, 803, 1077, 1092
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 2 cut(s) 19, 532
Hsp92II CATG 5 cut(s) 128, 349, 767, 1204, 1231
HspAI GCGC 4 cut(s) 287, 767, 951, 1224
Ksp22I TGATCA 1 cut(s) 864
Kzo9I GATC 7 cut(s) 119, 237, 298, 312, 391, 607, 864
LguI GCTCTTC 1 cut(s) 887
LmnI GCTCC 3 cut(s) 294, 734, 852
Lsp1109I GCAGC 3 cut(s) 747, 987, 1134
LweI GCATC 5 cut(s) 123, 547, 849, 860, 1151
MaeI CTAG 1 cut(s) 626
MaeII ACGT 2 cut(s) 19, 532
MaeIII GTNAC 4 cut(s) 176, 341, 444, 455
MalI GATC 7 cut(s) 121, 239, 300, 314, 393, 609, 866
MbiI CCGCTC 3 cut(s) 729, 806, 1086
MboI GATC 7 cut(s) 119, 237, 298, 312, 391, 607, 864
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 849
MluCI AATT 8 cut(s) 107, 221, 566, 595, 718, 983, 1156, 1231
MlyI GAGTC 2 cut(s) 358, 1180
MmeI TCCRAC 1 cut(s) 628
MroXI GAANNNNTTC 1 cut(s) 635
MseI TTAA 2 cut(s) 318, 494
MslI CAYNNNNRTG 1 cut(s) 584
MspI CCGG 1 cut(s) 1178
MspR9I CCNGG 1 cut(s) 1045
Mva1269I GAATGC 1 cut(s) 1179
MvaI CCWGG 1 cut(s) 1045
MvnI CGCG 2 cut(s) 287, 1071
MwoI GCNNNNNNNGC 6 cut(s) 481, 735, 766, 803, 1077, 1092
NcoI CCATGG 1 cut(s) 1200
NdeI CATATG 1 cut(s) 465
NdeII GATC 7 cut(s) 119, 237, 298, 312, 391, 607, 864
NlaIII CATG 5 cut(s) 128, 349, 767, 1204, 1231
NlaIV GGNNCC 5 cut(s) 42, 102, 215, 848, 1167
NmeAIII GCCGAG 1 cut(s) 998
NmuCI GTSAC 3 cut(s) 176, 341, 444
NsbI TGCGCA 1 cut(s) 952
NspI RCATGY 2 cut(s) 128, 767
OliI CACNNNNGTG 1 cut(s) 584
PaeI GCATGC 1 cut(s) 767
PaeR7I CTCGAG 1 cut(s) 1188
PaqCI CACCTGC 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 887
PctI GAATGC 1 cut(s) 1179
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 2 cut(s) 365, 713
PkrI GCNGC 3 cut(s) 762, 977, 1124
PleI GAGTC 2 cut(s) 357, 1180
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
PpsI GAGTC 2 cut(s) 357, 1180
Ppu21I YACGTR 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 40
PshAI GACNNNNGTC 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 1043
PspCI CACGTG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 1043
PspN4I GGNNCC 5 cut(s) 42, 102, 215, 848, 1167
PspPI GGNCC 4 cut(s) 40, 214, 276, 1166
PspPPI RGGWCCY 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 1188
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 2 cut(s) 184, 332
RsaNI GTAC 2 cut(s) 183, 331
RseI CAYNNNNRTG 1 cut(s) 584
SapI GCTCTTC 1 cut(s) 887
SaqAI TTAA 2 cut(s) 318, 494
SatI GCNGC 3 cut(s) 761, 976, 1123
Sau3AI GATC 7 cut(s) 119, 237, 298, 312, 391, 607, 864
Sau96I GGNCC 4 cut(s) 40, 214, 276, 1166
ScaI AGTACT 1 cut(s) 184
SchI GAGTC 2 cut(s) 358, 1180
ScrFI CCNGG 1 cut(s) 1045
SduI GDGCHC 1 cut(s) 849
SfaNI GCATC 5 cut(s) 123, 547, 849, 860, 1151
Sfr274I CTCGAG 1 cut(s) 1188
SinI GGWCC 4 cut(s) 40, 214, 276, 1166
SlaI CTCGAG 1 cut(s) 1188
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 1188
SmoI CTYRAG 1 cut(s) 1188
SphI GCATGC 1 cut(s) 767
Sse9I AATT 8 cut(s) 107, 221, 566, 595, 718, 983, 1156, 1231
SsiI CCGC 7 cut(s) 263, 484, 727, 806, 1071, 1086, 1112
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 1 cut(s) 1043
StyI CCWWGG 2 cut(s) 1161, 1200
TaaI ACNGT 4 cut(s) 182, 583, 680, 942
TaiI ACGT 2 cut(s) 22, 535
TaqI TCGA 2 cut(s) 912, 1189
TaqII GACCGA 1 cut(s) 264
TasI AATT 8 cut(s) 107, 221, 566, 595, 718, 983, 1156, 1231
TatI WGTACW 1 cut(s) 182
TfiI GAWTC 2 cut(s) 365, 713
Tru1I TTAA 2 cut(s) 318, 494
Tru9I TTAA 2 cut(s) 318, 494
TscAI CASTG 5 cut(s) 346, 486, 646, 685, 1139
TseFI GTSAC 3 cut(s) 176, 341, 444
TseI GCWGC 3 cut(s) 760, 975, 1122
Tsp45I GTSAC 3 cut(s) 176, 341, 444
TspDTI ATGAA 5 cut(s) 378, 455, 733, 840, 945
TspRI CASTG 5 cut(s) 346, 486, 646, 685, 1139
VpaK11BI GGWCC 4 cut(s) 40, 214, 276, 1166
XapI RAATTY 4 cut(s) 107, 595, 1156, 1231
XceI RCATGY 2 cut(s) 128, 767
XcmI CCANNNNNNNNNTGG 2 cut(s) 1036, 1088
XhoI CTCGAG 1 cut(s) 1188
XmnI GAANNNNTTC 1 cut(s) 635
XspI CTAG 1 cut(s) 626
ZrmI AGTACT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.