Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005397

Physical Location & Seq

Genomic Coordinates Reverse (-)

5665111 .. 5668761

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06870.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCACAGGCAAACCCTGCGGAGAAACCCCAGGAATCCTCAGAAATGGAAGTGAAAGATACAGGAAATGCTGCTTCTTTCAAGTTCAATGCTCAGGCACCTGAGTTCGTTCCCAGATCACATACCCAGGTGCCGATTTCCGGTTATTTCTATCCCTGCTTTCACTTTCTTGGTGACACTGCTTCCCCGGATTGGTTTTACATTGGGGACCAAGAATTGCCTCCTTATTTGATCTCCAATCCTAATATTCCTACAACCAATCGATCCAAGAATGTTCTGCCAGATGAGCTTCAGCATAAGATCATCAAACAGGTGGAGTACCAGTTCAGTGACATGAGTCTTCTAGCAAATGAATCATTAGCAAAACACATTAGTAAAGATCCTGAAGGCTATGTTCCGGTATCTGTTGTTTCTTCTACAAAAAAAATGAAGTCGCTTATTAGTAACAACCATATGCTCGCACAAGCACTCCGGTCCTCTTCAAAGCTTGTTGTAAGTGATGATGGAAAGAAGGTTAAACGTAAGCACCCTTTCACTGAAAAAGACAAAGAAGACTTGCAGGCTCGTACTGTTGTGGCAGAGAACTTGCCAGAAGATCACTCTCATCAGAACCTAGAGAAGATATTTAATGTGGTTGGGAGTGTGAAAACTATCCGAATATGCCATCCCCACGAATCCAATTCTTCCCGGTCCAAAGGTGATTTCATTATCAGTAACAAGCTCCATGCACTGGTGGAGTATGAGTCAACTGAAATAGCAGAGAAAGCGGTTGATAAGTTGAGTGATGAGAGGAACTGGAGAAAAGGACTCCGAGTAAGGACTTTGCTCAGACGCACGCCAAAATCCGTTTTGAAGAACAGAAAGTCTGAATTCGATATTTTAGAAGATGATGACACACCACACTATGAGTCTGCAGAAGATAGTTCTCAGCCAATAAGCCACATTGATATAGTTATTGACAGTATGAATGCTGAAGAAAATTCAATGGCATCCAAGAAAGGATGGGCGTGGGGACGTGGGAAGGCCCGGGGACGTTGTGCAAGCCAAAGTGGACGTGGCCTGATTGCTCCATCTCCGCAATCAAGCTGCGCCATACAGTGTGAAGCATCTGCCAAACCAAATACAAAGGGCCCGAGAATGCCAGATGGGACTAGGGGTTTCACCATGGGAAGAGGCAAGCCATTAAGAACCTCCAGTTCGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

La PAM2 RRM_1

Protein Analysis

402

Amino Acids

44.69

Weight (kDa)

8.75

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	101 - 159	3.7e-17	La domain
RRM_1	PF00076	194 - 261	1.1e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19090 AT3G19090
fragaria_vesca	FvH4_2g06870 FvH4_2g06870
malus_domestica	MD05G1074900.v1.1 MD10G1089400.v1.1
prunus_persica	Prupe.8G116300_v2.0.a1 Prupe.8G116300_v2.0.a1 Prupe.8G116300_v2.0.a1
pyrus_communis	pycom05g06810 pycom10g07290
rosa_chinensis	RchiOBHm_Chr6g0259181
rosa_laevigata	RLG00000014551
rosa_multiflora	Rmu_co8316895.1_g000001 Rmu_sc0002723.1_g000050
rosa_roxburghii	Rroxscaffold_7G00206310 Rroxscaffold_7G00206480
rosa_rugosa	Rorug05G0585400 Rorug05G0585400
rosa_samantha	Rh1AG078000 Rh1DG082900 Rh2AG437600 Rh2BG446100 Rh2DG456300 Rh6AG102400 Rh6BG094700 Rh6CG091800 Rh6DG085800
rosa_wichuraiana	Rw6G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	97, 130
AccB7I	CCANNNNNTGG	1 cut(s)	730
AciI	CCGC	3 cut(s)	20, 767, 1076
AclWI	GGATC	2 cut(s)	258, 374
AcsI	RAATTY	2 cut(s)	869, 979
AcuI	CTGAAG	3 cut(s)	275, 405, 993
AfaI	GTAC	2 cut(s)	320, 568
AfiI	CCNNNNNNNGG	3 cut(s)	140, 192, 730
AgsI	TTSAA	5 cut(s)	82, 88, 483, 853, 984
AjiI	CACGTC	2 cut(s)	1016, 1055
AjnI	CCWGG	2 cut(s)	30, 126
AjuI	GAANNNNNNNTTGG	2 cut(s)	686, 718
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	4 cut(s)	289, 487, 721, 1086
AluI	AGCT	4 cut(s)	289, 487, 721, 1086
AlwI	GGATC	2 cut(s)	258, 374
Ama87I	CYCGRG	2 cut(s)	1026, 1132
AoxI	GGCC	3 cut(s)	1023, 1057, 1129
ApaI	GGGCCC	1 cut(s)	1133
ApeKI	GCWGC	2 cut(s)	71, 1086
ApoI	RAATTY	2 cut(s)	869, 979
AspLEI	GCGC	1 cut(s)	1091
AspS9I	GGNCC	6 cut(s)	208, 474, 690, 1024, 1129, 1130
AsuC2I	CCSGG	4 cut(s)	188, 688, 1027, 1028
AsuHPI	GGTGA	3 cut(s)	185, 710, 1153
AvaI	CYCGRG	2 cut(s)	1026, 1132
AvaII	GGWCC	3 cut(s)	208, 474, 690
BaeGI	GKGCMC	1 cut(s)	1133
BanI	GGYRCC	2 cut(s)	97, 130
BanII	GRGCYC	1 cut(s)	1133
BbsI	GAAGAC	2 cut(s)	332, 558
BbvI	GCAGC	2 cut(s)	58, 1073
BccI	CCATC	5 cut(s)	497, 672, 996, 1078, 1139
BciT130I	CCWGG	2 cut(s)	32, 128
BcnI	CCSGG	4 cut(s)	188, 688, 1027, 1028
BfaI	CTAG	3 cut(s)	344, 614, 1152
BfmI	CTRYAG	1 cut(s)	912
BisI	GCNGC	2 cut(s)	72, 1087
BlsI	GCNGC	2 cut(s)	73, 1088
Bme1390I	CCNGG	6 cut(s)	32, 128, 188, 688, 1027, 1028
Bme18I	GGWCC	3 cut(s)	208, 474, 690
BmeT110I	CYCGRG	2 cut(s)	1026, 1132
BmgBI	CACGTC	2 cut(s)	1016, 1055
BmgT120I	GGNCC	6 cut(s)	208, 474, 690, 1024, 1129, 1130
BmiI	GGNNCC	4 cut(s)	99, 132, 209, 1131
BmrFI	CCNGG	6 cut(s)	32, 128, 188, 688, 1027, 1028
BmsI	GCATC	2 cut(s)	998, 1115
BoxI	GACNNNNGTC	1 cut(s)	336
BpiI	GAAGAC	2 cut(s)	332, 558
BpmI	CTGGAG	2 cut(s)	817, 1177
Bpu10I	CCTNAGC	1 cut(s)	93
BpuMI	CCSGG	4 cut(s)	188, 688, 1027, 1028
Bsa29I	ATCGAT	1 cut(s)	262
BsaJI	CCNNGG	6 cut(s)	30, 126, 186, 1026, 1027, 1164
BsaWI	WCCGGW	3 cut(s)	140, 397, 471
BsaXI	ACNNNNNCTCC	6 cut(s)	308, 338, 453, 483, 728, 758
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 192, 730
Bse1I	ACTGG	4 cut(s)	322, 735, 800, 1194
BseBI	CCWGG	2 cut(s)	32, 128
BseCI	ATCGAT	1 cut(s)	262
BseDI	CCNNGG	6 cut(s)	30, 126, 186, 1026, 1027, 1164
BseGI	GGATG	3 cut(s)	664, 989, 1007
BseLI	CCNNNNNNNGG	3 cut(s)	140, 192, 730
BseMII	CTCAG	5 cut(s)	54, 93, 107, 841, 941
BseNI	ACTGG	4 cut(s)	322, 735, 800, 1194
BseSI	GKGCMC	1 cut(s)	1133
BseXI	GCAGC	2 cut(s)	58, 1073
BshFI	GGCC	3 cut(s)	1025, 1059, 1131
BshNI	GGYRCC	2 cut(s)	97, 130
BshVI	ATCGAT	1 cut(s)	262
BsiHKCI	CYCGRG	2 cut(s)	1026, 1132
BsiSI	CCGG	6 cut(s)	141, 188, 398, 472, 688, 1027
BslFI	GGGAC	4 cut(s)	221, 1026, 1044, 1162
BslI	CCNNNNNNNGG	3 cut(s)	140, 192, 730
BsmFI	GGGAC	4 cut(s)	221, 1026, 1044, 1162
BsmI	GAATGC	2 cut(s)	973, 1143
BsnI	GGCC	3 cut(s)	1025, 1059, 1131
BsoBI	CYCGRG	2 cut(s)	1026, 1132
Bsp120I	GGGCCC	1 cut(s)	1129
Bsp1286I	GDGCHC	1 cut(s)	1133
Bsp143I	GATC	6 cut(s)	116, 231, 263, 300, 379, 595
Bsp19I	CCATGG	1 cut(s)	1164
BspACI	CCGC	3 cut(s)	20, 767, 1076
BspANI	GGCC	3 cut(s)	1025, 1059, 1131
BspCNI	CTCAG	5 cut(s)	53, 94, 106, 840, 940
BspDI	ATCGAT	1 cut(s)	262
BspLI	GGNNCC	4 cut(s)	99, 132, 209, 1131
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	2 cut(s)	258, 374
BspT107I	GGYRCC	2 cut(s)	97, 130
BsrI	ACTGG	4 cut(s)	322, 735, 800, 1194
BssECI	CCNNGG	6 cut(s)	30, 126, 186, 1026, 1027, 1164
BssMI	GATC	6 cut(s)	116, 231, 263, 300, 379, 595
BssT1I	CCWWGG	1 cut(s)	1164
Bst2UI	CCWGG	2 cut(s)	32, 128
Bst4CI	ACNGT	3 cut(s)	571, 962, 1098
Bst6I	CTCTTC	2 cut(s)	484, 1165
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	5 cut(s)	459, 561, 836, 1042, 1178
BstDEI	CTNAG	5 cut(s)	40, 93, 102, 827, 927
BstDSI	CCRYGG	1 cut(s)	1164
BstF5I	GGATG	3 cut(s)	664, 989, 1007
BstHHI	GCGC	1 cut(s)	1091
BstKTI	GATC	6 cut(s)	119, 234, 266, 303, 382, 598
BstMBI	GATC	6 cut(s)	116, 231, 263, 300, 379, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 286, 764
BstNI	CCWGG	2 cut(s)	32, 128
BstPAI	GACNNNNGTC	1 cut(s)	336
BstSCI	CCNGG	6 cut(s)	30, 126, 186, 686, 1025, 1026
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	1 cut(s)	1133
BstV1I	GCAGC	2 cut(s)	58, 1073
BstV2I	GAAGAC	2 cut(s)	332, 558
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
Bsu15I	ATCGAT	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	1025, 1059, 1131
BsuTUI	ATCGAT	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	1164
BtrI	CACGTC	2 cut(s)	1016, 1055
BtsCI	GGATG	3 cut(s)	664, 989, 1007
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	5 cut(s)	177, 334, 534, 728, 1103
Cac8I	GCNNGC	5 cut(s)	459, 561, 836, 1042, 1178
CfoI	GCGC	1 cut(s)	1091
Cfr13I	GGNCC	6 cut(s)	208, 474, 690, 1024, 1129, 1130
Cfr9I	CCCGGG	1 cut(s)	1026
ClaI	ATCGAT	1 cut(s)	262
CseI	GACGC	1 cut(s)	840
Csp6I	GTAC	2 cut(s)	319, 567
CviAII	CATG	3 cut(s)	334, 725, 1165
CviQI	GTAC	2 cut(s)	319, 567
DdeI	CTNAG	5 cut(s)	40, 93, 102, 827, 927
DpnI	GATC	6 cut(s)	118, 233, 265, 302, 381, 597
DpnII	GATC	6 cut(s)	116, 231, 263, 300, 379, 595
Eam1104I	CTCTTC	2 cut(s)	484, 1165
EarI	CTCTTC	2 cut(s)	484, 1165
Eco130I	CCWWGG	1 cut(s)	1164
Eco24I	GRGCYC	1 cut(s)	1133
Eco47I	GGWCC	3 cut(s)	208, 474, 690
Eco57I	CTGAAG	3 cut(s)	275, 405, 993
Eco88I	CYCGRG	2 cut(s)	1026, 1132
EcoO109I	RGGNCCY	1 cut(s)	1129
EcoRI	GAATTC	1 cut(s)	869
EcoRII	CCWGG	2 cut(s)	30, 126
EcoT14I	CCWWGG	1 cut(s)	1164
EcoT38I	GRGCYC	1 cut(s)	1133
ErhI	CCWWGG	1 cut(s)	1164
FaeI	CATG	3 cut(s)	337, 728, 1168
FaqI	GGGAC	4 cut(s)	221, 1026, 1044, 1162
FatI	CATG	3 cut(s)	333, 724, 1164
FauNDI	CATATG	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	72, 1087
FokI	GGATG	3 cut(s)	651, 976, 1014
FriOI	GRGCYC	1 cut(s)	1133
Fsp4HI	GCNGC	2 cut(s)	72, 1087
FspBI	CTAG	3 cut(s)	344, 614, 1152
GlaI	GCGC	1 cut(s)	1090
GluI	GCNGC	2 cut(s)	72, 1087
GsuI	CTGGAG	2 cut(s)	817, 1177
HaeIII	GGCC	3 cut(s)	1025, 1059, 1131
HapII	CCGG	6 cut(s)	141, 188, 398, 472, 688, 1027
HgaI	GACGC	1 cut(s)	840
HhaI	GCGC	1 cut(s)	1091
Hin1II	CATG	3 cut(s)	337, 728, 1168
Hin6I	GCGC	1 cut(s)	1089
HinP1I	GCGC	1 cut(s)	1089
HincII	GTYRAC	1 cut(s)	747
HindII	GTYRAC	1 cut(s)	747
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	7 cut(s)	35, 337, 353, 674, 743, 807, 908
HpaII	CCGG	6 cut(s)	141, 188, 398, 472, 688, 1027
HphI	GGTGA	3 cut(s)	185, 710, 1153
Hpy166II	GTNNAC	2 cut(s)	747, 1052
Hpy188I	TCNGA	6 cut(s)	43, 609, 656, 812, 830, 868
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	2 cut(s)	747, 1052
HpyAV	CCTTC	3 cut(s)	380, 505, 1015
HpyCH4III	ACNGT	3 cut(s)	571, 962, 1098
HpyCH4IV	ACGT	4 cut(s)	520, 1015, 1033, 1054
HpyCH4V	TGCA	4 cut(s)	559, 728, 914, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 286, 764
HpyF3I	CTNAG	5 cut(s)	40, 93, 102, 827, 927
HpySE526I	ACGT	4 cut(s)	520, 1015, 1033, 1054
Hsp92II	CATG	3 cut(s)	337, 728, 1168
HspAI	GCGC	1 cut(s)	1089
Kzo9I	GATC	6 cut(s)	116, 231, 263, 300, 379, 595
LmnI	GCTCC	2 cut(s)	726, 1072
Lsp1109I	GCAGC	2 cut(s)	58, 1073
LweI	GCATC	2 cut(s)	998, 1115
MaeI	CTAG	3 cut(s)	344, 614, 1152
MaeII	ACGT	4 cut(s)	520, 1015, 1033, 1054
MaeIII	GTNAC	4 cut(s)	173, 329, 443, 713
MalI	GATC	6 cut(s)	118, 233, 265, 302, 381, 597
MboI	GATC	6 cut(s)	116, 231, 263, 300, 379, 595
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	1133
MluCI	AATT	4 cut(s)	215, 679, 869, 979
MlyI	GAGTC	4 cut(s)	346, 752, 801, 917
MnlI	CCTC	6 cut(s)	49, 231, 487, 783, 1166, 1201
MseI	TTAA	4 cut(s)	516, 627, 1184, 1204
MspI	CCGG	6 cut(s)	141, 188, 398, 472, 688, 1027
MspR9I	CCNGG	6 cut(s)	32, 128, 188, 688, 1027, 1028
Mva1269I	GAATGC	2 cut(s)	973, 1143
MvaI	CCWGG	2 cut(s)	32, 128
MwoI	GCNNNNNNNGC	3 cut(s)	17, 286, 764
NciI	CCSGG	4 cut(s)	188, 688, 1027, 1028
NcoI	CCATGG	1 cut(s)	1164
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	6 cut(s)	116, 231, 263, 300, 379, 595
NlaIII	CATG	3 cut(s)	337, 728, 1168
NlaIV	GGNNCC	4 cut(s)	99, 132, 209, 1131
NmuCI	GTSAC	2 cut(s)	173, 329
PctI	GAATGC	2 cut(s)	973, 1143
PfeI	GAWTC	3 cut(s)	35, 353, 674
PflMI	CCANNNNNTGG	1 cut(s)	730
PkrI	GCNGC	2 cut(s)	73, 1088
PleI	GAGTC	4 cut(s)	345, 751, 801, 916
PpsI	GAGTC	4 cut(s)	345, 751, 801, 916
PshAI	GACNNNNGTC	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	30, 126
PspGI	CCWGG	2 cut(s)	30, 126
PspN4I	GGNNCC	4 cut(s)	99, 132, 209, 1131
PspOMI	GGGCCC	1 cut(s)	1129
PspPI	GGNCC	6 cut(s)	208, 474, 690, 1024, 1129, 1130
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	2 cut(s)	320, 568
RsaNI	GTAC	2 cut(s)	319, 567
SaqAI	TTAA	4 cut(s)	516, 627, 1184, 1204
SatI	GCNGC	2 cut(s)	72, 1087
Sau3AI	GATC	6 cut(s)	116, 231, 263, 300, 379, 595
Sau96I	GGNCC	6 cut(s)	208, 474, 690, 1024, 1129, 1130
SchI	GAGTC	4 cut(s)	346, 752, 801, 917
ScrFI	CCNGG	6 cut(s)	32, 128, 188, 688, 1027, 1028
SduI	GDGCHC	1 cut(s)	1133
SfaNI	GCATC	2 cut(s)	998, 1115
SfcI	CTRYAG	1 cut(s)	912
SinI	GGWCC	3 cut(s)	208, 474, 690
SmaI	CCCGGG	1 cut(s)	1028
Sse9I	AATT	4 cut(s)	215, 679, 869, 979
SsiI	CCGC	3 cut(s)	20, 767, 1076
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	3 cut(s)	344, 614, 1152
StyD4I	CCNGG	6 cut(s)	30, 126, 186, 686, 1025, 1026
StyI	CCWWGG	1 cut(s)	1164
TaaI	ACNGT	3 cut(s)	571, 962, 1098
TaiI	ACGT	4 cut(s)	523, 1018, 1036, 1057
TaqI	TCGA	2 cut(s)	262, 873
TasI	AATT	4 cut(s)	215, 679, 869, 979
TfiI	GAWTC	3 cut(s)	35, 353, 674
Tru1I	TTAA	4 cut(s)	516, 627, 1184, 1204
Tru9I	TTAA	4 cut(s)	516, 627, 1184, 1204
TscAI	CASTG	5 cut(s)	184, 334, 541, 735, 1103
TseFI	GTSAC	2 cut(s)	173, 329
TseI	GCWGC	2 cut(s)	71, 1086
Tsp45I	GTSAC	2 cut(s)	173, 329
TspDTI	ATGAA	4 cut(s)	366, 443, 694, 980
TspGWI	ACGGA	1 cut(s)	835
TspMI	CCCGGG	1 cut(s)	1026
TspRI	CASTG	5 cut(s)	184, 334, 541, 735, 1103
Van91I	CCANNNNNTGG	1 cut(s)	730
VpaK11BI	GGWCC	3 cut(s)	208, 474, 690
XapI	RAATTY	2 cut(s)	869, 979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1052
XmaI	CCCGGG	1 cut(s)	1026
XspI	CTAG	3 cut(s)	344, 614, 1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.