Rh1AG078000

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005397
Physical Location & Seq
Forward (+)
13029307 .. 13030580
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG078000.1

Sequence Viewer

Length: 351 bp
ATGAAATGGCGATCTCTTAAGGAGTTCAAGGGGAAACCATTGGTGTCGTTGAGGGAGTTTTTTACTAAAGAAGGCAATGAGCTCCCTACTTCTAAAGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCGTAAGTAGTCATTCCCAGCTTGCAACTGTATTGCGGAACTCCTCAAAGCTTGTAGTACATGAAGATGGGAAGAAGGTCAAACGCCAGCATCCCCTGACTCAATCAGATATGGAAGAGTTGCAACCTCACATTGTTGTTGCTGAAAATTTGCCTCAGGATCATTGCCACCAAAACCTCATGAAGATTTTCTCTACAGCTGGGAGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

116

Amino Acids

13.22

Weight (kDa)

9.84

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC4 PF02229 5 - 32 2.6e-07 Transcriptional Coactivator p15 (PC4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 175
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 2 cut(s) 198, 347
AflII CTTAAG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 28, 124
AluBI AGCT 4 cut(s) 82, 160, 190, 338
AluI AGCT 4 cut(s) 82, 160, 190, 338
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 1 cut(s) 306
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 294
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BccI CCATC 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 136
BmsI GCATC 2 cut(s) 125, 238
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 2 cut(s) 82, 301
BseGI GGATG 1 cut(s) 229
BseMI GCAATG 2 cut(s) 82, 301
BseMII CTCAG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 172
BseYI CCCAGC 2 cut(s) 156, 338
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 84
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 11, 298
BspACI CCGC 1 cut(s) 175
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 318
BspPI GGATC 1 cut(s) 306
BspTI CTTAAG 1 cut(s) 17
BsrDI GCAATG 2 cut(s) 82, 301
BssMI GATC 2 cut(s) 11, 298
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 162, 227
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 2 cut(s) 14, 301
BstMBI GATC 2 cut(s) 11, 298
BstSFI CTRYAG 1 cut(s) 333
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 2 cut(s) 162, 227
CciI TCATGA 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 197, 346
CviAII CATG 2 cut(s) 200, 319
CviJI RGCY 5 cut(s) 82, 137, 160, 190, 338
CviKI_1 RGCY 5 cut(s) 82, 137, 160, 190, 338
CviQI GTAC 2 cut(s) 197, 346
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 13, 300
DpnII GATC 2 cut(s) 11, 298
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
Eco81I CCTNAGG 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 2 cut(s) 203, 322
FaiI YATR 3 cut(s) 201, 251, 320
FatI CATG 2 cut(s) 199, 318
FokI GGATG 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 84
GsaI CCCAGC 2 cut(s) 160, 342
HaeIII GGCC 1 cut(s) 137
Hin1II CATG 2 cut(s) 203, 322
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 3 cut(s) 124, 296, 319
HpyAV CCTTC 2 cut(s) 65, 208
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 116, 164, 262
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 203, 322
Kzo9I GATC 2 cut(s) 11, 298
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 5 cut(s) 170, 239, 248, 281, 324
LweI GCATC 2 cut(s) 125, 238
MalI GATC 2 cut(s) 13, 300
MboI GATC 2 cut(s) 11, 298
MboII GAAGA 5 cut(s) 139, 215, 223, 266, 334
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 7 cut(s) 45, 149, 193, 276, 303, 326, 336
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 2 cut(s) 18, 132
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 17
NdeII GATC 2 cut(s) 11, 298
NlaIII CATG 2 cut(s) 203, 322
PagI TCATGA 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 326
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 84
PspFI CCCAGC 2 cut(s) 156, 338
PspPI GGNCC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 2 cut(s) 198, 347
RsaNI GTAC 2 cut(s) 197, 346
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 18, 132
Sau3AI GATC 2 cut(s) 11, 298
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 232
SduI GDGCHC 1 cut(s) 84
SetI ASST 8 cut(s) 84, 162, 192, 219, 268, 318, 340, 347
SfaNI GCATC 2 cut(s) 125, 238
SfcI CTRYAG 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 175
SstI GAGCTC 1 cut(s) 84
TaaI ACNGT 1 cut(s) 169
TasI AATT 1 cut(s) 286
TatI WGTACW 1 cut(s) 196
Tru1I TTAA 2 cut(s) 18, 132
Tru9I TTAA 2 cut(s) 18, 132
TspDTI ATGAA 3 cut(s) 17, 216, 335
Vha464I CTTAAG 1 cut(s) 17
XapI RAATTY 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.