Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005397

Physical Location & Seq

Genomic Coordinates Reverse (-)

14956929 .. 14959738

Gene Structure 2810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCACAGGCAAAACCTGTGGAGAAACCCCAAGAATCCTCTGACATGGAAGTGAAAGATACAGGGAACACTACTTCCTTCAAATTCAATGCTCAGGCACCTGAATTTGTTCCCAGATCGCATACCCAGATGCCGATTTCGGGTTATTTCTATCCCTGCTTTCACTTTCTTGGTGACACTGCTTCCCCGGATTGGTTTTACATTGGGGACCAAGAATTACCTCCTTATTTGATCTCCAATCCCAATATTCCTATAACCAATCGATCCAAGAATGTACTACCCGATGAGCTTCAGCAGAAAATCATCAAACAGGTGGAGTACCAGTTCAGTGACATGAGTCTGTTAGCAAATGAATCATTAGCAAAACACATGAGTAAAGATCCTGAAGGATATGTTCCGATATCTGTTGTTGCTTCTACGAAAAAGATGAAGTCACTTATTAGTAACAACCATATGCTTGCACAAGCAGTCCGGTCCTCTTCAAAGCTTGTTGTAAGTGATGATGGAAAGAAGGTTAAACGTAAGCACCCTTTCACTGAAAAAGACAAAGAAGAATTGCAGTCTCGTACTGTTGTGGCAGAGAACTTGCCAGAAGATCACTCTCATCAAAACCTAGAGAAGATATTTAGTGTGGTTGGGAGTGTGAAAACTATCCGAATATGCCATCCCCACGAATCCAATTCTTCCCGGTCCAAAGGTGATTTCATTATTAGCAACAAGCTCCATGCGCTGGTGGAGTACGAGACAACAGACATAGCAGATAAAGCGGTTGATAAGTTGAGTGATGAGAGGAACTGGAGAAAAGGACTCCGAGTAAGGACTTTGGTCAGACGCTCGCCAAAATCCGTTTTGAAGAACAGAAAGTCTGAATTCGATATTTTAGAGGATGATGACACACCACACTATGAATCTGCAGAAGATAGTTCTCAGCCAAGCCACATTGATCTGGTTATTGATAGTATGAATGCTGAAGAAAATTCAATGGGATCCAAGAAAGGATGGGCATGGGGTCGTGGGAAGGCCCGGGGGCGTAGTGCGAGCCAGAGTGGACGTGGCCTGATTGCTCCATCTCCGCAATCAAGCTGCGCTATACAGTGTGAAGCCTCTGCCAAACCAAATACAAAGGGCCCGAGAATGCCAGACGGGACTAGGGGTTTCACCATGGGAAGAGGCAAGCCATTAAGAACCACCAGTTCGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

La PAM2 RRM_1

Protein Analysis

400

Amino Acids

44.64

Weight (kDa)

8.91

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	101 - 158	3.4e-18	La domain
RRM_1	PF00076	194 - 261	2.2e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19090 AT3G19090
fragaria_vesca	FvH4_2g06870 FvH4_2g06870
malus_domestica	MD05G1074900.v1.1 MD10G1089400.v1.1
prunus_persica	Prupe.8G116300_v2.0.a1 Prupe.8G116300_v2.0.a1 Prupe.8G116300_v2.0.a1
pyrus_communis	pycom05g06810 pycom10g07290
rosa_chinensis	RchiOBHm_Chr6g0259181
rosa_laevigata	RLG00000014551
rosa_multiflora	Rmu_co8316895.1_g000001 Rmu_sc0002723.1_g000050
rosa_roxburghii	Rroxscaffold_7G00206310 Rroxscaffold_7G00206480
rosa_rugosa	Rorug05G0585400 Rorug05G0585400
rosa_samantha	Rh1AG078000 Rh1DG082900 Rh2AG437600 Rh2BG446100 Rh2DG456300 Rh6AG102400 Rh6BG094700 Rh6CG091800 Rh6DG085800
rosa_wichuraiana	Rw6G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccB7I	CCANNNNNTGG	1 cut(s)	730
AciI	CCGC	2 cut(s)	767, 1073
AclWI	GGATC	4 cut(s)	258, 374, 981, 994
AcsI	RAATTY	4 cut(s)	83, 104, 869, 976
AcuI	CTGAAG	3 cut(s)	275, 405, 990
AfaI	GTAC	4 cut(s)	276, 320, 568, 740
AfiI	CCNNNNNNNGG	3 cut(s)	140, 192, 730
AgsI	TTSAA	5 cut(s)	82, 88, 483, 853, 981
AjiI	CACGTC	1 cut(s)	1052
AjuI	GAANNNNNNNTTGG	2 cut(s)	686, 718
AloI	GAACNNNNNNTCC	4 cut(s)	59, 91, 308, 340
AluBI	AGCT	4 cut(s)	289, 487, 721, 1083
AluI	AGCT	4 cut(s)	289, 487, 721, 1083
Alw26I	GTCTC	2 cut(s)	567, 737
AlwI	GGATC	4 cut(s)	258, 374, 981, 994
Ama87I	CYCGRG	2 cut(s)	1023, 1129
AoxI	GGCC	3 cut(s)	1020, 1054, 1126
ApaI	GGGCCC	1 cut(s)	1130
ApeKI	GCWGC	1 cut(s)	1083
ApoI	RAATTY	4 cut(s)	83, 104, 869, 976
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	2 cut(s)	730, 1088
AspS9I	GGNCC	6 cut(s)	208, 474, 690, 1021, 1126, 1127
AsuC2I	CCSGG	4 cut(s)	188, 688, 1024, 1025
AsuHPI	GGTGA	3 cut(s)	185, 710, 1150
AvaI	CYCGRG	2 cut(s)	1023, 1129
AvaII	GGWCC	3 cut(s)	208, 474, 690
BaeGI	GKGCMC	1 cut(s)	1130
BamHI	GGATCC	1 cut(s)	986
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	1130
BbvI	GCAGC	1 cut(s)	1070
BccI	CCATC	4 cut(s)	497, 672, 993, 1075
BcnI	CCSGG	4 cut(s)	188, 688, 1024, 1025
BcoDI	GTCTC	2 cut(s)	567, 737
BfaI	CTAG	2 cut(s)	614, 1149
BfmI	CTRYAG	1 cut(s)	912
BisI	GCNGC	1 cut(s)	1084
BlsI	GCNGC	1 cut(s)	1085
Bme1390I	CCNGG	4 cut(s)	188, 688, 1024, 1025
Bme18I	GGWCC	3 cut(s)	208, 474, 690
BmeT110I	CYCGRG	2 cut(s)	1023, 1129
BmgBI	CACGTC	1 cut(s)	1052
BmgT120I	GGNCC	6 cut(s)	208, 474, 690, 1021, 1126, 1127
BmiI	GGNNCC	4 cut(s)	99, 209, 988, 1128
BmrFI	CCNGG	4 cut(s)	188, 688, 1024, 1025
BmsI	GCATC	1 cut(s)	120
BoxI	GACNNNNGTC	2 cut(s)	336, 824
BpmI	CTGGAG	1 cut(s)	817
Bpu10I	CCTNAGC	1 cut(s)	93
BpuMI	CCSGG	4 cut(s)	188, 688, 1024, 1025
Bsa29I	ATCGAT	1 cut(s)	262
BsaJI	CCNNGG	4 cut(s)	186, 1023, 1024, 1161
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 192, 730
Bse1I	ACTGG	3 cut(s)	322, 800, 1191
BseCI	ATCGAT	1 cut(s)	262
BseDI	CCNNGG	4 cut(s)	186, 1023, 1024, 1161
BseGI	GGATG	3 cut(s)	664, 892, 1004
BseLI	CCNNNNNNNGG	3 cut(s)	140, 192, 730
BseMII	CTCAG	2 cut(s)	107, 941
BseNI	ACTGG	3 cut(s)	322, 800, 1191
BseSI	GKGCMC	1 cut(s)	1130
BseXI	GCAGC	1 cut(s)	1070
BshFI	GGCC	3 cut(s)	1022, 1056, 1128
BshNI	GGYRCC	1 cut(s)	97
BshVI	ATCGAT	1 cut(s)	262
BsiHKCI	CYCGRG	2 cut(s)	1023, 1129
BsiSI	CCGG	4 cut(s)	188, 472, 688, 1024
BslFI	GGGAC	2 cut(s)	221, 1159
BslI	CCNNNNNNNGG	3 cut(s)	140, 192, 730
BsmAI	GTCTC	2 cut(s)	567, 737
BsmFI	GGGAC	2 cut(s)	221, 1159
BsmI	GAATGC	2 cut(s)	970, 1140
BsnI	GGCC	3 cut(s)	1022, 1056, 1128
BsoBI	CYCGRG	2 cut(s)	1023, 1129
Bsp120I	GGGCCC	1 cut(s)	1126
Bsp1286I	GDGCHC	1 cut(s)	1130
Bsp143I	GATC	7 cut(s)	116, 231, 263, 379, 595, 943, 986
Bsp19I	CCATGG	1 cut(s)	1161
BspACI	CCGC	2 cut(s)	767, 1073
BspANI	GGCC	3 cut(s)	1022, 1056, 1128
BspCNI	CTCAG	2 cut(s)	106, 940
BspDI	ATCGAT	1 cut(s)	262
BspLI	GGNNCC	4 cut(s)	99, 209, 988, 1128
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	4 cut(s)	258, 374, 981, 994
BspT107I	GGYRCC	1 cut(s)	97
BsrI	ACTGG	3 cut(s)	322, 800, 1191
BssECI	CCNNGG	4 cut(s)	186, 1023, 1024, 1161
BssMI	GATC	7 cut(s)	116, 231, 263, 379, 595, 943, 986
BssT1I	CCWWGG	1 cut(s)	1161
Bst4CI	ACNGT	2 cut(s)	571, 1095
Bst6I	CTCTTC	2 cut(s)	484, 1162
BstC8I	GCNNGC	4 cut(s)	459, 836, 1039, 1175
BstDEI	CTNAG	2 cut(s)	93, 927
BstDSI	CCRYGG	1 cut(s)	1161
BstF5I	GGATG	3 cut(s)	664, 892, 1004
BstHHI	GCGC	2 cut(s)	730, 1088
BstKTI	GATC	7 cut(s)	119, 234, 266, 382, 598, 946, 989
BstMAI	GTCTC	2 cut(s)	567, 737
BstMBI	GATC	7 cut(s)	116, 231, 263, 379, 595, 943, 986
BstMWI	GCNNNNNNNGC	2 cut(s)	727, 764
BstPAI	GACNNNNGTC	2 cut(s)	336, 824
BstSCI	CCNGG	4 cut(s)	186, 686, 1022, 1023
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	1 cut(s)	1130
BstV1I	GCAGC	1 cut(s)	1070
BstX2I	RGATCY	2 cut(s)	379, 986
BstYI	RGATCY	2 cut(s)	379, 986
Bsu15I	ATCGAT	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	1022, 1056, 1128
BsuTUI	ATCGAT	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	1161
BtrI	CACGTC	1 cut(s)	1052
BtsCI	GGATG	3 cut(s)	664, 892, 1004
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	4 cut(s)	177, 334, 534, 1100
Cac8I	GCNNGC	4 cut(s)	459, 836, 1039, 1175
CfoI	GCGC	2 cut(s)	730, 1088
Cfr13I	GGNCC	6 cut(s)	208, 474, 690, 1021, 1126, 1127
Cfr9I	CCCGGG	1 cut(s)	1023
ClaI	ATCGAT	1 cut(s)	262
CseI	GACGC	1 cut(s)	840
Csp6I	GTAC	4 cut(s)	275, 319, 567, 739
CspCI	CAANNNNNGTGG	1 cut(s)	35
CviAII	CATG	6 cut(s)	46, 334, 370, 725, 1005, 1162
CviQI	GTAC	4 cut(s)	275, 319, 567, 739
DdeI	CTNAG	2 cut(s)	93, 927
DpnI	GATC	7 cut(s)	118, 233, 265, 381, 597, 945, 988
DpnII	GATC	7 cut(s)	116, 231, 263, 379, 595, 943, 986
Eam1104I	CTCTTC	2 cut(s)	484, 1162
EarI	CTCTTC	2 cut(s)	484, 1162
Eco130I	CCWWGG	1 cut(s)	1161
Eco24I	GRGCYC	1 cut(s)	1130
Eco32I	GATATC	1 cut(s)	402
Eco47I	GGWCC	3 cut(s)	208, 474, 690
Eco57I	CTGAAG	3 cut(s)	275, 405, 990
Eco88I	CYCGRG	2 cut(s)	1023, 1129
EcoO109I	RGGNCCY	1 cut(s)	1126
EcoRI	GAATTC	1 cut(s)	869
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	1161
EcoT38I	GRGCYC	1 cut(s)	1130
ErhI	CCWWGG	1 cut(s)	1161
FaeI	CATG	6 cut(s)	49, 337, 373, 728, 1008, 1165
FaqI	GGGAC	2 cut(s)	221, 1159
FatI	CATG	6 cut(s)	45, 333, 369, 724, 1004, 1161
FauNDI	CATATG	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	1084
FokI	GGATG	3 cut(s)	651, 899, 1011
FriOI	GRGCYC	1 cut(s)	1130
Fsp4HI	GCNGC	1 cut(s)	1084
FspBI	CTAG	2 cut(s)	614, 1149
GlaI	GCGC	2 cut(s)	729, 1087
GluI	GCNGC	1 cut(s)	1084
GsuI	CTGGAG	1 cut(s)	817
HaeIII	GGCC	3 cut(s)	1022, 1056, 1128
HapII	CCGG	4 cut(s)	188, 472, 688, 1024
HgaI	GACGC	1 cut(s)	840
HhaI	GCGC	2 cut(s)	730, 1088
Hin1II	CATG	6 cut(s)	49, 337, 373, 728, 1008, 1165
Hin6I	GCGC	2 cut(s)	728, 1086
HinP1I	GCGC	2 cut(s)	728, 1086
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	6 cut(s)	35, 337, 353, 674, 807, 908
HpaII	CCGG	4 cut(s)	188, 472, 688, 1024
HphI	GGTGA	3 cut(s)	185, 710, 1150
Hpy166II	GTNNAC	1 cut(s)	1049
Hpy188I	TCNGA	6 cut(s)	43, 399, 656, 812, 830, 868
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	1 cut(s)	1049
HpyAV	CCTTC	4 cut(s)	88, 380, 505, 1012
HpyCH4III	ACNGT	2 cut(s)	571, 1095
HpyCH4IV	ACGT	2 cut(s)	520, 1051
HpyCH4V	TGCA	3 cut(s)	461, 559, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	727, 764
HpyF3I	CTNAG	2 cut(s)	93, 927
HpySE526I	ACGT	2 cut(s)	520, 1051
Hsp92II	CATG	6 cut(s)	49, 337, 373, 728, 1008, 1165
HspAI	GCGC	2 cut(s)	728, 1086
Kzo9I	GATC	7 cut(s)	116, 231, 263, 379, 595, 943, 986
LmnI	GCTCC	2 cut(s)	726, 1069
Lsp1109I	GCAGC	1 cut(s)	1070
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	2 cut(s)	614, 1149
MaeII	ACGT	2 cut(s)	520, 1051
MaeIII	GTNAC	4 cut(s)	173, 329, 432, 443
MalI	GATC	7 cut(s)	118, 233, 265, 381, 597, 945, 988
MboI	GATC	7 cut(s)	116, 231, 263, 379, 595, 943, 986
MboII	GAAGA	9 cut(s)	471, 563, 605, 631, 675, 865, 929, 983, 1179
MflI	RGATCY	2 cut(s)	379, 986
MhlI	GDGCHC	1 cut(s)	1130
MluCI	AATT	7 cut(s)	83, 104, 215, 554, 679, 869, 976
MlyI	GAGTC	2 cut(s)	346, 801
MnlI	CCTC	7 cut(s)	49, 231, 487, 783, 877, 1114, 1163
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	3 cut(s)	516, 1181, 1201
MslI	CAYNNNNRTG	1 cut(s)	50
MspI	CCGG	4 cut(s)	188, 472, 688, 1024
MspR9I	CCNGG	4 cut(s)	188, 688, 1024, 1025
Mva1269I	GAATGC	2 cut(s)	970, 1140
MwoI	GCNNNNNNNGC	2 cut(s)	727, 764
NciI	CCSGG	4 cut(s)	188, 688, 1024, 1025
NcoI	CCATGG	1 cut(s)	1161
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	7 cut(s)	116, 231, 263, 379, 595, 943, 986
NlaIII	CATG	6 cut(s)	49, 337, 373, 728, 1008, 1165
NlaIV	GGNNCC	4 cut(s)	99, 209, 988, 1128
NmuCI	GTSAC	3 cut(s)	173, 329, 432
PctI	GAATGC	2 cut(s)	970, 1140
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	4 cut(s)	35, 353, 674, 908
PflMI	CCANNNNNTGG	1 cut(s)	730
PkrI	GCNGC	1 cut(s)	1085
PleI	GAGTC	2 cut(s)	345, 801
PpsI	GAGTC	2 cut(s)	345, 801
PshAI	GACNNNNGTC	2 cut(s)	336, 824
PspN4I	GGNNCC	4 cut(s)	99, 209, 988, 1128
PspOMI	GGGCCC	1 cut(s)	1126
PspPI	GGNCC	6 cut(s)	208, 474, 690, 1021, 1126, 1127
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	2 cut(s)	379, 986
RsaI	GTAC	4 cut(s)	276, 320, 568, 740
RsaNI	GTAC	4 cut(s)	275, 319, 567, 739
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	516, 1181, 1201
SatI	GCNGC	1 cut(s)	1084
Sau3AI	GATC	7 cut(s)	116, 231, 263, 379, 595, 943, 986
Sau96I	GGNCC	6 cut(s)	208, 474, 690, 1021, 1126, 1127
SchI	GAGTC	2 cut(s)	346, 801
ScrFI	CCNGG	4 cut(s)	188, 688, 1024, 1025
SduI	GDGCHC	1 cut(s)	1130
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	912
SinI	GGWCC	3 cut(s)	208, 474, 690
SmaI	CCCGGG	1 cut(s)	1025
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	7 cut(s)	83, 104, 215, 554, 679, 869, 976
SsiI	CCGC	2 cut(s)	767, 1073
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	2 cut(s)	614, 1149
StyD4I	CCNGG	4 cut(s)	186, 686, 1022, 1023
StyI	CCWWGG	1 cut(s)	1161
TaaI	ACNGT	2 cut(s)	571, 1095
TaiI	ACGT	2 cut(s)	523, 1054
TaqI	TCGA	2 cut(s)	262, 873
TasI	AATT	7 cut(s)	83, 104, 215, 554, 679, 869, 976
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	4 cut(s)	35, 353, 674, 908
Tru1I	TTAA	3 cut(s)	516, 1181, 1201
Tru9I	TTAA	3 cut(s)	516, 1181, 1201
TscAI	CASTG	4 cut(s)	184, 334, 541, 1100
TseFI	GTSAC	3 cut(s)	173, 329, 432
TseI	GCWGC	1 cut(s)	1083
Tsp45I	GTSAC	3 cut(s)	173, 329, 432
TspDTI	ATGAA	5 cut(s)	366, 443, 694, 921, 977
TspGWI	ACGGA	1 cut(s)	835
TspMI	CCCGGG	1 cut(s)	1023
TspRI	CASTG	4 cut(s)	184, 334, 541, 1100
Van91I	CCANNNNNTGG	1 cut(s)	730
VpaK11BI	GGWCC	3 cut(s)	208, 474, 690
XapI	RAATTY	4 cut(s)	83, 104, 869, 976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1049
XmaI	CCCGGG	1 cut(s)	1023
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	2 cut(s)	614, 1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.