Rh6DG085800

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005397
Physical Location & Seq
Reverse (-)
10031575 .. 10035045
3471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG085800.1

Sequence Viewer

Length: 849 bp
ATGCCATTTTCTGTCATACATGATTTTGGATTTGTGTCAGTTCCGATATCTGTTGTTGCTTCTACGAAAAAGATGAAGTCACTTATTAGTAACAACCATATGCTTGCACAAGCAGTCCGGTCCTCTTCAAAGCTTGTTGTAAGTGATGATGGAAAGAAGGTTAAACGTAAGCACCCTTTCACTGAAAAAGACAAAGAAGAATTGCAGTCTCGTACTGTTGTGGCAGAGAACTTGCCAGAAGATCACTCTCATCAAAACCTAGAGAAGATATTTAGTGTGGTTGGGAGTGTGAAAACTATCCGAATATGCCATCCCCACGAATCCAATTCTTCCCGGTCCAAAGGTGATTTCATTATTAGCAACAAGCTCCATGCGCTGGTGGAGTACGAGACAACAGACATAGCAGATAAAGCGGTTGATAAGTTGAGTGATGAGAGGAACTGGAGAAAAGGACTCCGAGTAAGGACTTTGGTCAGACGCTCGCCAAAATCCGTTTTGAAGAACAGAAAGTCTGAATTCGATATTTTAGAGGATGATGACACACCACACTATGAATCTGCAGAAGATAGTTCTCAGCCAAGCCACATTGATCTGGTTATTGATAGTATGAATGCTGAAGAAAATTCAATGGGATCCAAGAAAGGATGGGCATGGGGACGTGGGAAGGCCCGGGGGCGTAGTGCGAGCCAGAGTGGACGTGGCCTGATTGCTCCATCTCCGCAATCAAGCTGCGCTATACAGTGTGAAGCCTCTGCCAAACCAAATACAAAGGGCCCGAGAATGCCAGACGGGACTAGGGGTTTCACCATGGGAAGAGGCAAGCCATTAAAAACCACCAGTTCGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

282

Amino Acids

31.18

Weight (kDa)

9.55

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 76 - 143 1.2e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 376
AciI CCGC 2 cut(s) 413, 719
AclWI GGATC 2 cut(s) 627, 640
AcsI RAATTY 2 cut(s) 515, 622
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 2 cut(s) 214, 386
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 3 cut(s) 129, 499, 627
AjiI CACGTC 2 cut(s) 659, 698
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 3 cut(s) 133, 367, 729
AluI AGCT 3 cut(s) 133, 367, 729
Alw26I GTCTC 2 cut(s) 213, 383
AlwI GGATC 2 cut(s) 627, 640
Ama87I CYCGRG 2 cut(s) 669, 775
AoxI GGCC 3 cut(s) 666, 700, 772
ApaI GGGCCC 1 cut(s) 776
ApeKI GCWGC 1 cut(s) 729
ApoI RAATTY 2 cut(s) 515, 622
AspLEI GCGC 2 cut(s) 376, 734
AspS9I GGNCC 5 cut(s) 120, 336, 667, 772, 773
AsuC2I CCSGG 3 cut(s) 334, 670, 671
AsuHPI GGTGA 2 cut(s) 356, 796
AvaI CYCGRG 2 cut(s) 669, 775
AvaII GGWCC 2 cut(s) 120, 336
BaeGI GKGCMC 1 cut(s) 776
BamHI GGATCC 1 cut(s) 632
BanII GRGCYC 1 cut(s) 776
BbvI GCAGC 1 cut(s) 716
BccI CCATC 4 cut(s) 143, 318, 639, 721
BcnI CCSGG 3 cut(s) 334, 670, 671
BcoDI GTCTC 2 cut(s) 213, 383
BfaI CTAG 2 cut(s) 260, 795
BfmI CTRYAG 1 cut(s) 558
BisI GCNGC 1 cut(s) 730
BlsI GCNGC 1 cut(s) 731
Bme1390I CCNGG 3 cut(s) 334, 670, 671
Bme18I GGWCC 2 cut(s) 120, 336
BmeT110I CYCGRG 2 cut(s) 669, 775
BmgBI CACGTC 2 cut(s) 659, 698
BmgT120I GGNCC 5 cut(s) 120, 336, 667, 772, 773
BmiI GGNNCC 2 cut(s) 634, 774
BmrFI CCNGG 3 cut(s) 334, 670, 671
BoxI GACNNNNGTC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 463
BpuMI CCSGG 3 cut(s) 334, 670, 671
BsaJI CCNNGG 3 cut(s) 669, 670, 807
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 2 cut(s) 446, 837
BseDI CCNNGG 3 cut(s) 669, 670, 807
BseGI GGATG 3 cut(s) 310, 538, 650
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 2 cut(s) 446, 837
BseSI GKGCMC 1 cut(s) 776
BseXI GCAGC 1 cut(s) 716
BshFI GGCC 3 cut(s) 668, 702, 774
BsiHKCI CYCGRG 2 cut(s) 669, 775
BsiSI CCGG 3 cut(s) 118, 334, 670
BslFI GGGAC 2 cut(s) 669, 805
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 2 cut(s) 213, 383
BsmFI GGGAC 2 cut(s) 669, 805
BsmI GAATGC 2 cut(s) 616, 786
BsnI GGCC 3 cut(s) 668, 702, 774
BsoBI CYCGRG 2 cut(s) 669, 775
Bsp120I GGGCCC 1 cut(s) 772
Bsp1286I GDGCHC 1 cut(s) 776
Bsp143I GATC 3 cut(s) 241, 589, 632
Bsp19I CCATGG 1 cut(s) 807
BspACI CCGC 2 cut(s) 413, 719
BspANI GGCC 3 cut(s) 668, 702, 774
BspCNI CTCAG 1 cut(s) 586
BspLI GGNNCC 2 cut(s) 634, 774
BspMAI CTGCAG 1 cut(s) 562
BspPI GGATC 2 cut(s) 627, 640
BsrI ACTGG 2 cut(s) 446, 837
BssECI CCNNGG 3 cut(s) 669, 670, 807
BssMI GATC 3 cut(s) 241, 589, 632
BssT1I CCWWGG 1 cut(s) 807
Bst4CI ACNGT 2 cut(s) 217, 741
Bst6I CTCTTC 2 cut(s) 130, 808
BstC8I GCNNGC 4 cut(s) 105, 482, 685, 821
BstDEI CTNAG 1 cut(s) 573
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 3 cut(s) 310, 538, 650
BstHHI GCGC 2 cut(s) 376, 734
BstKTI GATC 3 cut(s) 244, 592, 635
BstMAI GTCTC 2 cut(s) 213, 383
BstMBI GATC 3 cut(s) 241, 589, 632
BstMWI GCNNNNNNNGC 2 cut(s) 373, 410
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 3 cut(s) 332, 668, 669
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 776
BstV1I GCAGC 1 cut(s) 716
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
BsuRI GGCC 3 cut(s) 668, 702, 774
BtgI CCRYGG 1 cut(s) 807
BtrI CACGTC 2 cut(s) 659, 698
BtsCI GGATG 3 cut(s) 310, 538, 650
BtsIMutI CAGTG 2 cut(s) 180, 746
Cac8I GCNNGC 4 cut(s) 105, 482, 685, 821
CfoI GCGC 2 cut(s) 376, 734
Cfr13I GGNCC 5 cut(s) 120, 336, 667, 772, 773
Cfr9I CCCGGG 1 cut(s) 669
CseI GACGC 1 cut(s) 486
Csp6I GTAC 2 cut(s) 213, 385
CviAII CATG 4 cut(s) 20, 371, 651, 808
CviQI GTAC 2 cut(s) 213, 385
DdeI CTNAG 1 cut(s) 573
DpnI GATC 3 cut(s) 243, 591, 634
DpnII GATC 3 cut(s) 241, 589, 632
Eam1104I CTCTTC 2 cut(s) 130, 808
EarI CTCTTC 2 cut(s) 130, 808
Eco130I CCWWGG 1 cut(s) 807
Eco24I GRGCYC 1 cut(s) 776
Eco32I GATATC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 120, 336
Eco57I CTGAAG 1 cut(s) 636
Eco88I CYCGRG 2 cut(s) 669, 775
EcoO109I RGGNCCY 1 cut(s) 772
EcoRI GAATTC 1 cut(s) 515
EcoRV GATATC 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 776
ErhI CCWWGG 1 cut(s) 807
FaeI CATG 4 cut(s) 23, 374, 654, 811
FaqI GGGAC 2 cut(s) 669, 805
FatI CATG 4 cut(s) 19, 370, 650, 807
FauNDI CATATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 730
FokI GGATG 3 cut(s) 297, 545, 657
FriOI GRGCYC 1 cut(s) 776
Fsp4HI GCNGC 1 cut(s) 730
FspBI CTAG 2 cut(s) 260, 795
GlaI GCGC 2 cut(s) 375, 733
GluI GCNGC 1 cut(s) 730
GsuI CTGGAG 1 cut(s) 463
HaeIII GGCC 3 cut(s) 668, 702, 774
HapII CCGG 3 cut(s) 118, 334, 670
HgaI GACGC 1 cut(s) 486
HhaI GCGC 2 cut(s) 376, 734
Hin1II CATG 4 cut(s) 23, 374, 654, 811
Hin6I GCGC 2 cut(s) 374, 732
HinP1I GCGC 2 cut(s) 374, 732
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 3 cut(s) 320, 453, 554
HpaII CCGG 3 cut(s) 118, 334, 670
HphI GGTGA 2 cut(s) 356, 796
Hpy166II GTNNAC 1 cut(s) 695
Hpy188I TCNGA 5 cut(s) 45, 302, 458, 476, 514
Hpy8I GTNNAC 1 cut(s) 695
HpyAV CCTTC 2 cut(s) 151, 658
HpyCH4III ACNGT 2 cut(s) 217, 741
HpyCH4IV ACGT 3 cut(s) 166, 658, 697
HpyCH4V TGCA 3 cut(s) 107, 205, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 410
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 3 cut(s) 166, 658, 697
Hsp92II CATG 4 cut(s) 23, 374, 654, 811
HspAI GCGC 2 cut(s) 374, 732
Kzo9I GATC 3 cut(s) 241, 589, 632
LmnI GCTCC 2 cut(s) 372, 715
Lsp1109I GCAGC 1 cut(s) 716
MaeI CTAG 2 cut(s) 260, 795
MaeII ACGT 3 cut(s) 166, 658, 697
MaeIII GTNAC 2 cut(s) 78, 89
MalI GATC 3 cut(s) 243, 591, 634
MboI GATC 3 cut(s) 241, 589, 632
MboII GAAGA 9 cut(s) 117, 209, 251, 277, 321, 511, 575, 629, 825
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 1 cut(s) 776
MluCI AATT 4 cut(s) 200, 325, 515, 622
MlyI GAGTC 1 cut(s) 447
MnlI CCTC 5 cut(s) 133, 429, 523, 760, 809
MseI TTAA 3 cut(s) 162, 827, 847
MspI CCGG 3 cut(s) 118, 334, 670
MspR9I CCNGG 3 cut(s) 334, 670, 671
Mva1269I GAATGC 2 cut(s) 616, 786
MwoI GCNNNNNNNGC 2 cut(s) 373, 410
NciI CCSGG 3 cut(s) 334, 670, 671
NcoI CCATGG 1 cut(s) 807
NdeI CATATG 1 cut(s) 99
NdeII GATC 3 cut(s) 241, 589, 632
NlaIII CATG 4 cut(s) 23, 374, 654, 811
NlaIV GGNNCC 2 cut(s) 634, 774
NmuCI GTSAC 1 cut(s) 78
PctI GAATGC 2 cut(s) 616, 786
PfeI GAWTC 2 cut(s) 320, 554
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 1 cut(s) 731
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
PshAI GACNNNNGTC 1 cut(s) 470
PspN4I GGNNCC 2 cut(s) 634, 774
PspOMI GGGCCC 1 cut(s) 772
PspPI GGNCC 5 cut(s) 120, 336, 667, 772, 773
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 632
RsaI GTAC 2 cut(s) 214, 386
RsaNI GTAC 2 cut(s) 213, 385
SaqAI TTAA 3 cut(s) 162, 827, 847
SatI GCNGC 1 cut(s) 730
Sau3AI GATC 3 cut(s) 241, 589, 632
Sau96I GGNCC 5 cut(s) 120, 336, 667, 772, 773
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 3 cut(s) 334, 670, 671
SduI GDGCHC 1 cut(s) 776
SetI ASST 9 cut(s) 135, 162, 169, 261, 346, 369, 661, 700, 731
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 2 cut(s) 120, 336
SmaI CCCGGG 1 cut(s) 671
Sse9I AATT 4 cut(s) 200, 325, 515, 622
SsiI CCGC 2 cut(s) 413, 719
SspMI CTAG 2 cut(s) 260, 795
StyD4I CCNGG 3 cut(s) 332, 668, 669
StyI CCWWGG 1 cut(s) 807
TaaI ACNGT 2 cut(s) 217, 741
TaiI ACGT 3 cut(s) 169, 661, 700
TaqI TCGA 1 cut(s) 519
TasI AATT 4 cut(s) 200, 325, 515, 622
TfiI GAWTC 2 cut(s) 320, 554
Tru1I TTAA 3 cut(s) 162, 827, 847
Tru9I TTAA 3 cut(s) 162, 827, 847
TscAI CASTG 2 cut(s) 187, 746
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 1 cut(s) 729
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 4 cut(s) 89, 340, 567, 623
TspGWI ACGGA 1 cut(s) 481
TspMI CCCGGG 1 cut(s) 669
TspRI CASTG 2 cut(s) 187, 746
Van91I CCANNNNNTGG 1 cut(s) 376
VpaK11BI GGWCC 2 cut(s) 120, 336
XapI RAATTY 2 cut(s) 515, 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XmaI CCCGGG 1 cut(s) 669
XspI CTAG 2 cut(s) 260, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.