MD05G1074900.v1.1

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0005397
Physical Location & Seq
Forward (+)
15950335 .. 15953751
3417 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1074900.v1.1.491

Sequence Viewer

Length: 1212 bp
ATGGCGCAAGCACAACCACCTGGGGAAAAAATCCAAGACGTCCCAGAAATGGAGGTGAAAGAAAACCCAAGAAGTCCATCGTTCAAATTCAATGCACAGGCACCTGAATTTGTGCCAAGATCACATGCCCAGATGCCAATTTCTGGTTATTTCTATCCCTACTTTCACTTTCTTGGTGACACTACTTCCCCTGATTGGTTTTACGTTGAGGACCAAGAATTGCCTCCGTACTTGATCTCCAATAATCCCAATATCGATCCGCTTTCCAATCGGTCCAAGAATGCGATCCCGGATGATCTTCAACAGAAGATCATCAAGCAGGTGGAGTACCAGTTCAGTGACATGAGCCTGCTGGCAAATGAATCCTTATCAAAACACATAAGTAAAGATCCCGAAGGCTTTGTTCCAATATCTGTTGTTGCCTCCACCAAAAAAATGAAGTCACTTATTAGTAACAACCATATTCTCGCCCAAGCGCTCCGGTCTTCTTCAAAGCTGGTTGTAAACGAGGATGGCAAGAAGGTTCGACGTAAGCATCCTTTTACTGAAAAGGACAAAGAGGAATTGCAGTCTCGCACGGTTGTGGCAGAGAATTTGCCTGAAGATCACTCTCATCAAAACCTAGAGAAGATATTCAGTGTGGTTGGAAGCGTGAAAACCATCCGAATATGCCATCCCCACGAATCCAATTCTTCTCGCTCAAAAGGCGATTTCATTATCAGCAACAAGCTTCATGCACTTGTGGAGTATGAAACAACAGACATAACAGAGAGAGCGGTTGAAAAGTTGAGTGATGAAAGGAACTGGAGAAAAGGTCTCCGAGTAAGGATGCTGCTCAGACGCTCGCCAAAGTCGGTTTTGAAGAACAGAAAGTCTGATTTCGATGGCATTTTAGAGGATGAAGAGCCATTATATGATTGTGCAGAAGAAACTTCTCACCCAAGCAACCTTGAATTGGTCATTGATAGTCCTAATGGTGAAGAAAATTCAGCGGGGTCCAAGAAAGGATGGGCGTGGGGGCGCAGTAAGGGCCGAGGACGCGGGCAGAGCCAGAGTAGTCGTGGCCTGATTGCCCCGTCTCCGCTATCAAGCAGCACCATCCAGTGTGAGTCATCTGCAAAACAGAATTCCAAGGGCCCAAGAATGCCAGATGGTACTAGGGGTTTCACCATGGGAAGAGGCAAGCCAGTAAGCGCCACGAATTCGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

404

Amino Acids

45.18

Weight (kDa)

8.53

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 104 - 162 1e-17 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 310
AatII GACGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 143
AccBSI CCGCTC 1 cut(s) 776
AccII CGCG 1 cut(s) 1041
AciI CCGC 5 cut(s) 260, 776, 992, 1041, 1082
AclWI GGATC 3 cut(s) 251, 280, 383
AcsI RAATTY 6 cut(s) 86, 107, 592, 985, 1126, 1201
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 3 cut(s) 230, 329, 1156
AfeI AGCGCT 1 cut(s) 477
AfiI CCNNNNNNNGG 4 cut(s) 49, 143, 195, 955
AgsI TTSAA 7 cut(s) 85, 91, 302, 492, 782, 862, 953
AjnI CCWGG 1 cut(s) 19
AleI CACNNNNGTG 1 cut(s) 581
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 2 cut(s) 496, 730
AluI AGCT 2 cut(s) 496, 730
Alw26I GTCTC 3 cut(s) 576, 821, 1083
AlwI GGATC 3 cut(s) 251, 280, 383
Aor51HI AGCGCT 1 cut(s) 477
AoxI GGCC 3 cut(s) 1030, 1063, 1135
ApaI GGGCCC 1 cut(s) 1139
ApeKI GCWGC 2 cut(s) 832, 1092
ApoI RAATTY 6 cut(s) 86, 107, 592, 985, 1126, 1201
Asp700I GAANNNNTTC 1 cut(s) 632
AspLEI GCGC 4 cut(s) 7, 478, 1023, 1196
AspS9I GGNCC 6 cut(s) 211, 273, 996, 1030, 1135, 1136
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 5 cut(s) 67, 188, 929, 989, 1159
AvaII GGWCC 3 cut(s) 211, 273, 996
BaeGI GKGCMC 1 cut(s) 1139
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 1139
BbsI GAAGAC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 819, 1104
BccI CCATC 8 cut(s) 85, 506, 668, 681, 878, 1002, 1106, 1145
BceAI ACGGC 1 cut(s) 1192
BciT130I CCWGG 1 cut(s) 21
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 3 cut(s) 576, 821, 1083
BfaI CTAG 2 cut(s) 623, 1158
BfoI RGCGCY 2 cut(s) 479, 1197
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 2 cut(s) 833, 1093
BlsI GCNGC 2 cut(s) 834, 1094
Bme1390I CCNGG 2 cut(s) 21, 290
Bme18I GGWCC 3 cut(s) 211, 273, 996
BmgT120I GGNCC 6 cut(s) 211, 273, 996, 1030, 1135, 1136
BmiI GGNNCC 3 cut(s) 102, 997, 1137
BmrFI CCNGG 2 cut(s) 21, 290
BmsI GCATC 3 cut(s) 123, 544, 819
BpiI GAAGAC 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 826
BpuMI CCSGG 1 cut(s) 290
Bsa29I ATCGAT 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 821
BsaJI CCNNGG 4 cut(s) 20, 1033, 1131, 1170
BsaWI WCCGGW 1 cut(s) 480
BsaXI ACNNNNNCTCC 6 cut(s) 221, 251, 317, 347, 799, 829
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 143, 195, 955
Bse1I ACTGG 4 cut(s) 331, 809, 1102, 1187
BseBI CCWGG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 4 cut(s) 20, 1033, 1131, 1170
BseGI GGATG 9 cut(s) 298, 517, 535, 660, 673, 834, 904, 1013, 1098
BseLI CCNNNNNNNGG 4 cut(s) 49, 143, 195, 955
BseMII CTCAG 1 cut(s) 850
BseNI ACTGG 4 cut(s) 331, 809, 1102, 1187
BseSI GKGCMC 1 cut(s) 1139
BseXI GCAGC 2 cut(s) 819, 1104
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 1041
BshFI GGCC 3 cut(s) 1032, 1065, 1137
BshNI GGYRCC 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 255
BsiSI CCGG 2 cut(s) 290, 481
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 4 cut(s) 49, 143, 195, 955
BsmAI GTCTC 3 cut(s) 576, 821, 1083
BsmBI CGTCTC 1 cut(s) 1083
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 2 cut(s) 286, 1149
BsnI GGCC 3 cut(s) 1032, 1065, 1137
Bso31I GGTCTC 1 cut(s) 821
Bsp120I GGGCCC 1 cut(s) 1135
Bsp1286I GDGCHC 1 cut(s) 1139
Bsp143I GATC 8 cut(s) 119, 234, 256, 285, 295, 309, 388, 604
Bsp19I CCATGG 1 cut(s) 1170
BspACI CCGC 5 cut(s) 260, 776, 992, 1041, 1082
BspANI GGCC 3 cut(s) 1032, 1065, 1137
BspCNI CTCAG 1 cut(s) 849
BspDI ATCGAT 1 cut(s) 255
BspFNI CGCG 1 cut(s) 1041
BspLI GGNNCC 3 cut(s) 102, 997, 1137
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 3 cut(s) 251, 280, 383
BspQI GCTCTTC 1 cut(s) 897
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 821
BsrBI CCGCTC 1 cut(s) 776
BsrI ACTGG 4 cut(s) 331, 809, 1102, 1187
BssECI CCNNGG 4 cut(s) 20, 1033, 1131, 1170
BssMI GATC 8 cut(s) 119, 234, 256, 285, 295, 309, 388, 604
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 1131, 1170
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 2 cut(s) 897, 1171
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 6 cut(s) 9, 350, 354, 845, 1043, 1184
BstDEI CTNAG 1 cut(s) 836
BstDSI CCRYGG 1 cut(s) 1170
BstF5I GGATG 9 cut(s) 298, 517, 535, 660, 673, 834, 904, 1013, 1098
BstFNI CGCG 1 cut(s) 1041
BstH2I RGCGCY 2 cut(s) 479, 1197
BstHHI GCGC 4 cut(s) 7, 478, 1023, 1196
BstKTI GATC 8 cut(s) 122, 237, 259, 288, 298, 312, 391, 607
BstMAI GTCTC 3 cut(s) 576, 821, 1083
BstMBI GATC 8 cut(s) 119, 234, 256, 285, 295, 309, 388, 604
BstMWI GCNNNNNNNGC 4 cut(s) 705, 1029, 1038, 1047
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 19, 288
BstSLI GKGCMC 1 cut(s) 1139
BstUI CGCG 1 cut(s) 1041
BstV1I GCAGC 2 cut(s) 819, 1104
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 3 cut(s) 1032, 1065, 1137
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 1170
BtsCI GGATG 9 cut(s) 298, 517, 535, 660, 673, 834, 904, 1013, 1098
BtsIMutI CAGTG 3 cut(s) 343, 643, 1109
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 6 cut(s) 9, 350, 354, 845, 1043, 1184
CfoI GCGC 4 cut(s) 7, 478, 1023, 1196
Cfr13I GGNCC 6 cut(s) 211, 273, 996, 1030, 1135, 1136
ClaI ATCGAT 1 cut(s) 255
CseI GACGC 2 cut(s) 849, 1047
Csp6I GTAC 3 cut(s) 229, 328, 1155
CviAII CATG 4 cut(s) 125, 343, 734, 1171
CviQI GTAC 3 cut(s) 229, 328, 1155
DdeI CTNAG 1 cut(s) 836
DpnI GATC 8 cut(s) 121, 236, 258, 287, 297, 311, 390, 606
DpnII GATC 8 cut(s) 119, 234, 256, 285, 295, 309, 388, 604
Eam1104I CTCTTC 2 cut(s) 897, 1171
EarI CTCTTC 2 cut(s) 897, 1171
Eco130I CCWWGG 2 cut(s) 1131, 1170
Eco24I GRGCYC 1 cut(s) 1139
Eco31I GGTCTC 1 cut(s) 821
Eco47I GGWCC 3 cut(s) 211, 273, 996
Eco47III AGCGCT 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 621
EcoO109I RGGNCCY 1 cut(s) 1135
EcoRI GAATTC 2 cut(s) 1126, 1201
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 2 cut(s) 1131, 1170
EcoT38I GRGCYC 1 cut(s) 1139
ErhI CCWWGG 2 cut(s) 1131, 1170
Esp3I CGTCTC 1 cut(s) 1083
FaeI CATG 4 cut(s) 128, 346, 737, 1174
FaqI GGGAC 1 cut(s) 26
FatI CATG 4 cut(s) 124, 342, 733, 1170
FauI CCCGC 2 cut(s) 985, 1034
Fnu4HI GCNGC 2 cut(s) 833, 1093
FokI GGATG 9 cut(s) 305, 522, 524, 647, 660, 841, 911, 1020, 1085
FriOI GRGCYC 1 cut(s) 1139
Fsp4HI GCNGC 2 cut(s) 833, 1093
FspBI CTAG 2 cut(s) 623, 1158
GlaI GCGC 4 cut(s) 6, 477, 1022, 1195
GluI GCNGC 2 cut(s) 833, 1093
GsuI CTGGAG 1 cut(s) 826
HaeII RGCGCY 2 cut(s) 479, 1197
HaeIII GGCC 3 cut(s) 1032, 1065, 1137
HapII CCGG 2 cut(s) 290, 481
HgaI GACGC 2 cut(s) 849, 1047
HhaI GCGC 4 cut(s) 7, 478, 1023, 1196
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 4 cut(s) 128, 346, 737, 1174
Hin6I GCGC 4 cut(s) 5, 476, 1021, 1194
HinP1I GCGC 4 cut(s) 5, 476, 1021, 1194
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 3 cut(s) 362, 683, 1109
HpaII CCGG 2 cut(s) 290, 481
HphI GGTGA 5 cut(s) 67, 188, 929, 989, 1159
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 4 cut(s) 665, 821, 839, 877
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 1 cut(s) 505
Hpy99I CGWCG 1 cut(s) 531
HpyAV CCTTC 2 cut(s) 389, 514
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 3 cut(s) 39, 204, 529
HpyCH4V TGCA 5 cut(s) 95, 568, 737, 923, 1118
HpyF10VI GCNNNNNNNGC 4 cut(s) 705, 1029, 1038, 1047
HpyF3I CTNAG 1 cut(s) 836
HpySE526I ACGT 3 cut(s) 39, 204, 529
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 4 cut(s) 128, 346, 737, 1174
HspAI GCGC 4 cut(s) 5, 476, 1021, 1194
Kzo9I GATC 8 cut(s) 119, 234, 256, 285, 295, 309, 388, 604
LguI GCTCTTC 1 cut(s) 897
LmnI GCTCC 1 cut(s) 483
Lsp1109I GCAGC 2 cut(s) 819, 1104
LweI GCATC 3 cut(s) 123, 544, 819
MaeI CTAG 2 cut(s) 623, 1158
MaeII ACGT 3 cut(s) 39, 204, 529
MaeIII GTNAC 4 cut(s) 176, 338, 441, 452
MalI GATC 8 cut(s) 121, 236, 258, 287, 297, 311, 390, 606
MbiI CCGCTC 1 cut(s) 776
MboI GATC 8 cut(s) 119, 234, 256, 285, 295, 309, 388, 604
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 1139
MlyI GAGTC 1 cut(s) 1118
MmeI TCCRAC 1 cut(s) 625
MnlI CCTC 9 cut(s) 46, 202, 234, 433, 502, 553, 889, 1028, 1172
MroXI GAANNNNTTC 1 cut(s) 632
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 992
MspI CCGG 2 cut(s) 290, 481
MspR9I CCNGG 2 cut(s) 21, 290
Mva1269I GAATGC 2 cut(s) 286, 1149
MvaI CCWGG 1 cut(s) 21
MvnI CGCG 1 cut(s) 1041
MwoI GCNNNNNNNGC 4 cut(s) 705, 1029, 1038, 1047
NciI CCSGG 1 cut(s) 290
NcoI CCATGG 1 cut(s) 1170
NdeII GATC 8 cut(s) 119, 234, 256, 285, 295, 309, 388, 604
NlaIII CATG 4 cut(s) 128, 346, 737, 1174
NlaIV GGNNCC 3 cut(s) 102, 997, 1137
NmeAIII GCCGAG 1 cut(s) 1058
NmuCI GTSAC 3 cut(s) 176, 338, 441
NspI RCATGY 1 cut(s) 128
OliI CACNNNNGTG 1 cut(s) 581
PaqCI CACCTGC 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 897
PcsI WCGNNNNNNNCGW 1 cut(s) 1205
PctI GAATGC 2 cut(s) 286, 1149
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 362, 683
PflMI CCANNNNNTGG 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 2 cut(s) 834, 1094
PleI GAGTC 1 cut(s) 1117
PpsI GAGTC 1 cut(s) 1117
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 3 cut(s) 102, 997, 1137
PspOMI GGGCCC 1 cut(s) 1135
PspPI GGNCC 6 cut(s) 211, 273, 996, 1030, 1135, 1136
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 3 cut(s) 230, 329, 1156
RsaNI GTAC 3 cut(s) 229, 328, 1155
RseI CAYNNNNRTG 1 cut(s) 581
SapI GCTCTTC 1 cut(s) 897
SatI GCNGC 2 cut(s) 833, 1093
Sau3AI GATC 8 cut(s) 119, 234, 256, 285, 295, 309, 388, 604
Sau96I GGNCC 6 cut(s) 211, 273, 996, 1030, 1135, 1136
SchI GAGTC 1 cut(s) 1118
ScrFI CCNGG 2 cut(s) 21, 290
SduI GDGCHC 1 cut(s) 1139
SfaNI GCATC 3 cut(s) 123, 544, 819
SinI GGWCC 3 cut(s) 211, 273, 996
SmiMI CAYNNNNRTG 1 cut(s) 581
SsiI CCGC 5 cut(s) 260, 776, 992, 1041, 1082
SspMI CTAG 2 cut(s) 623, 1158
StyD4I CCNGG 2 cut(s) 19, 288
StyI CCWWGG 2 cut(s) 1131, 1170
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 3 cut(s) 42, 207, 532
TaqI TCGA 3 cut(s) 255, 526, 882
TaqII GACCGA 1 cut(s) 261
TfiI GAWTC 2 cut(s) 362, 683
TscAI CASTG 3 cut(s) 343, 643, 1109
TseFI GTSAC 3 cut(s) 176, 338, 441
TseI GCWGC 2 cut(s) 832, 1092
Tsp45I GTSAC 3 cut(s) 176, 338, 441
TspDTI ATGAA 7 cut(s) 375, 452, 703, 722, 765, 810, 915
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 3 cut(s) 343, 643, 1109
Van91I CCANNNNNTGG 1 cut(s) 143
VpaK11BI GGWCC 3 cut(s) 211, 273, 996
XapI RAATTY 6 cut(s) 86, 107, 592, 985, 1126, 1201
XceI RCATGY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 1058
XmnI GAANNNNTTC 1 cut(s) 632
XspI CTAG 2 cut(s) 623, 1158
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.