pycom05g06810

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0005397
Physical Location & Seq
Forward (+)
9619441 .. 9620947
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06810.4

Sequence Viewer

Length: 402 bp
ATGATCTTCAACAGAACGATCATCAAGCAGGTGGAGTACCAGTTCAGTGACATGAGCCTGCTGGCAAATGAATCCTTAGCGAAACACATAAGTAAAGATCCCGAAGGCTTTGTTCCAATATCTGTTGTTGCCTCCACCAAAAAAATGAAGTCACTTATTAGTAACAACCATATTCTCGCCCAAGCGCTCCGGTCTTCTTTAAAGCTGGTTGTAAACGAGGATGGCAAGAAGGTTCGACGTAAGCATCCTTTTACTGAAAAGGACAAAGAGGAATTGCAGTCTCGCACGGTTGTGGCAGAGAATTTGCCTGAAGATCAATCTCATCAAAACCTAGAGAAGATATTCAGTGTGGTTGGAAGGATCATCACTGCATATTTACACTTTCTGTCAAGAACAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

134

Amino Acids

15.15

Weight (kDa)

9.56

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
Acc36I ACCTGC 1 cut(s) 19
AclWI GGATC 2 cut(s) 92, 368
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 38
AfeI AGCGCT 1 cut(s) 186
AgsI TTSAA 1 cut(s) 10
AleI CACNNNNGTG 1 cut(s) 290
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 2 cut(s) 92, 368
Aor51HI AGCGCT 1 cut(s) 186
ApoI RAATTY 1 cut(s) 301
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 186
BccI CCATC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 1 cut(s) 332
BfoI RGCGCY 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 19
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 226, 244
BseNI ACTGG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 285
Bsp143I GATC 5 cut(s) 3, 18, 97, 313, 360
BspMI ACCTGC 1 cut(s) 19
BspPI GGATC 2 cut(s) 92, 368
BsrI ACTGG 1 cut(s) 40
BssMI GATC 5 cut(s) 3, 18, 97, 313, 360
Bst4CI ACNGT 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 59, 63
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 2 cut(s) 226, 244
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 5 cut(s) 6, 21, 100, 316, 363
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 5 cut(s) 3, 18, 97, 313, 360
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BtsCI GGATG 2 cut(s) 226, 244
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 3 cut(s) 52, 352, 366
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 59, 63
CfoI GCGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 52
CviJI RGCY 3 cut(s) 57, 108, 205
CviKI_1 RGCY 3 cut(s) 57, 108, 205
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 76
DpnI GATC 5 cut(s) 5, 20, 99, 315, 362
DpnII GATC 5 cut(s) 3, 18, 97, 313, 360
DraI TTTAAA 1 cut(s) 201
Eco47III AGCGCT 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 330
FaeI CATG 1 cut(s) 55
FaiI YATR 4 cut(s) 53, 89, 171, 373
FatI CATG 1 cut(s) 51
FokI GGATG 2 cut(s) 231, 233
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 188
HapII CCGG 1 cut(s) 190
HhaI GCGC 1 cut(s) 187
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 101, 390
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 3 cut(s) 98, 223, 351
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 277, 371
HpyF3I CTNAG 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 5 cut(s) 3, 18, 97, 313, 360
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 7 cut(s) 14, 47, 53, 71, 191, 203, 321
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 3 cut(s) 47, 150, 161
MalI GATC 5 cut(s) 5, 20, 99, 315, 362
MboI GATC 5 cut(s) 3, 18, 97, 313, 360
MboII GAAGA 3 cut(s) 186, 323, 349
MflI RGATCY 1 cut(s) 97
MluCI AATT 2 cut(s) 272, 301
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 3 cut(s) 142, 211, 262
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 290
MspI CCGG 1 cut(s) 190
NdeII GATC 5 cut(s) 3, 18, 97, 313, 360
NlaIII CATG 1 cut(s) 55
NmuCI GTSAC 2 cut(s) 47, 150
OliI CACNNNNGTG 1 cut(s) 290
PaqCI CACCTGC 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 200
Sau3AI GATC 5 cut(s) 3, 18, 97, 313, 360
SetI ASST 5 cut(s) 33, 207, 234, 241, 333
SfaNI GCATC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 2 cut(s) 272, 301
SspMI CTAG 1 cut(s) 332
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 235
TasI AATT 2 cut(s) 272, 301
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 3 cut(s) 52, 352, 373
TseFI GTSAC 2 cut(s) 47, 150
Tsp45I GTSAC 2 cut(s) 47, 150
TspDTI ATGAA 2 cut(s) 84, 161
TspRI CASTG 3 cut(s) 52, 352, 373
XapI RAATTY 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.