Rh6AG102400

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005397
Physical Location & Seq
Reverse (-)
15199841 .. 15203311
3471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG102400.1

Sequence Viewer

Length: 849 bp
ATGCCATTTTCTGTCATACATGATTTTGGATTTGTGTCAGTTCCGATATCTGTTGTTGCTTCTACGAAAAAGATGAAGTCACTTATTAGTAACAACCATATGCTTGCACAAGCAGTCCGGTCCTCTTCAAAGCTTGTTGTAAGTGATGATGGAAAGAAGGTTAAACGTAAGCACCCTTTCACTGAAAAAGACAAAGAAGAATTGCAGTCTCGTACTGTTGTGGCAGAGAACTTGCCAGAAGATCACTCTCATCAAAACCTAGAGAAGATATTTAGTGTGGTTGGGAGTGTGAAAACTATCCGAATATGCCATCCCCACGAATCCAATTCTTCCCGGTCCAAAGGTGATTTCATTATTAGCAACAAGCTCCATGCGCTGGTGGAGTACGAGACAACAGACATAGCAGATAAAGCGGTTGATAAGTTGAGTGATGAGAGGAACTGGAGAAAAGGACTCCGAGTAAGGACTTTGGTCAGACGCTCGCCAAAATCCGTTTTGAAGAACAGAAAGTCTGAATTCGATATTTTAGAGGATGATGACACACCACACTATGAATCTGCAGAAGATAGTTCTCAGCCAAGCCACATTGATCTGGTTATTGATAGTATGAATGCTGAAGAAAATTCAATGGGATCCAAGAAAGGATGGGCATGGGGACGTGGGAAGGCCCGGGGGCGTAGTGCGAGCCAGAGTGGACGTGGCCTGATTGCTCCATCTCCGCAATCAAGCTGCGCTATACAGTGTGAAGCCTCTGCCAAACCAAATACAAAGGGCCCGAGAATGCCAGACGGGACTAGGGGTTTCACCATGGGAAGAGGCAAGCCATTAAAAACCACCAGTTCGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

282

Amino Acids

31.18

Weight (kDa)

9.55

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 76 - 143 1.2e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 376
AciI CCGC 2 cut(s) 413, 719
AclWI GGATC 2 cut(s) 627, 640
AcsI RAATTY 2 cut(s) 515, 622
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 2 cut(s) 214, 386
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 3 cut(s) 129, 499, 627
AjiI CACGTC 2 cut(s) 659, 698
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 3 cut(s) 133, 367, 729
AluI AGCT 3 cut(s) 133, 367, 729
Alw26I GTCTC 2 cut(s) 213, 383
AlwI GGATC 2 cut(s) 627, 640
Ama87I CYCGRG 2 cut(s) 669, 775
AoxI GGCC 3 cut(s) 666, 700, 772
ApaI GGGCCC 1 cut(s) 776
ApeKI GCWGC 1 cut(s) 729
ApoI RAATTY 2 cut(s) 515, 622
AspLEI GCGC 2 cut(s) 376, 734
AspS9I GGNCC 5 cut(s) 120, 336, 667, 772, 773
AsuC2I CCSGG 3 cut(s) 334, 670, 671
AsuHPI GGTGA 2 cut(s) 356, 796
AvaI CYCGRG 2 cut(s) 669, 775
AvaII GGWCC 2 cut(s) 120, 336
BaeGI GKGCMC 1 cut(s) 776
BamHI GGATCC 1 cut(s) 632
BanII GRGCYC 1 cut(s) 776
BbvI GCAGC 1 cut(s) 716
BccI CCATC 4 cut(s) 143, 318, 639, 721
BcnI CCSGG 3 cut(s) 334, 670, 671
BcoDI GTCTC 2 cut(s) 213, 383
BfaI CTAG 2 cut(s) 260, 795
BfmI CTRYAG 1 cut(s) 558
BisI GCNGC 1 cut(s) 730
BlsI GCNGC 1 cut(s) 731
Bme1390I CCNGG 3 cut(s) 334, 670, 671
Bme18I GGWCC 2 cut(s) 120, 336
BmeT110I CYCGRG 2 cut(s) 669, 775
BmgBI CACGTC 2 cut(s) 659, 698
BmgT120I GGNCC 5 cut(s) 120, 336, 667, 772, 773
BmiI GGNNCC 2 cut(s) 634, 774
BmrFI CCNGG 3 cut(s) 334, 670, 671
BoxI GACNNNNGTC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 463
BpuMI CCSGG 3 cut(s) 334, 670, 671
BsaJI CCNNGG 3 cut(s) 669, 670, 807
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 2 cut(s) 446, 837
BseDI CCNNGG 3 cut(s) 669, 670, 807
BseGI GGATG 3 cut(s) 310, 538, 650
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 2 cut(s) 446, 837
BseSI GKGCMC 1 cut(s) 776
BseXI GCAGC 1 cut(s) 716
BshFI GGCC 3 cut(s) 668, 702, 774
BsiHKCI CYCGRG 2 cut(s) 669, 775
BsiSI CCGG 3 cut(s) 118, 334, 670
BslFI GGGAC 2 cut(s) 669, 805
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 2 cut(s) 213, 383
BsmFI GGGAC 2 cut(s) 669, 805
BsmI GAATGC 2 cut(s) 616, 786
BsnI GGCC 3 cut(s) 668, 702, 774
BsoBI CYCGRG 2 cut(s) 669, 775
Bsp120I GGGCCC 1 cut(s) 772
Bsp1286I GDGCHC 1 cut(s) 776
Bsp143I GATC 3 cut(s) 241, 589, 632
Bsp19I CCATGG 1 cut(s) 807
BspACI CCGC 2 cut(s) 413, 719
BspANI GGCC 3 cut(s) 668, 702, 774
BspCNI CTCAG 1 cut(s) 586
BspLI GGNNCC 2 cut(s) 634, 774
BspMAI CTGCAG 1 cut(s) 562
BspPI GGATC 2 cut(s) 627, 640
BsrI ACTGG 2 cut(s) 446, 837
BssECI CCNNGG 3 cut(s) 669, 670, 807
BssMI GATC 3 cut(s) 241, 589, 632
BssT1I CCWWGG 1 cut(s) 807
Bst4CI ACNGT 2 cut(s) 217, 741
Bst6I CTCTTC 2 cut(s) 130, 808
BstC8I GCNNGC 4 cut(s) 105, 482, 685, 821
BstDEI CTNAG 1 cut(s) 573
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 3 cut(s) 310, 538, 650
BstHHI GCGC 2 cut(s) 376, 734
BstKTI GATC 3 cut(s) 244, 592, 635
BstMAI GTCTC 2 cut(s) 213, 383
BstMBI GATC 3 cut(s) 241, 589, 632
BstMWI GCNNNNNNNGC 2 cut(s) 373, 410
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 3 cut(s) 332, 668, 669
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 776
BstV1I GCAGC 1 cut(s) 716
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
BsuRI GGCC 3 cut(s) 668, 702, 774
BtgI CCRYGG 1 cut(s) 807
BtrI CACGTC 2 cut(s) 659, 698
BtsCI GGATG 3 cut(s) 310, 538, 650
BtsIMutI CAGTG 2 cut(s) 180, 746
Cac8I GCNNGC 4 cut(s) 105, 482, 685, 821
CfoI GCGC 2 cut(s) 376, 734
Cfr13I GGNCC 5 cut(s) 120, 336, 667, 772, 773
Cfr9I CCCGGG 1 cut(s) 669
CseI GACGC 1 cut(s) 486
Csp6I GTAC 2 cut(s) 213, 385
CviAII CATG 4 cut(s) 20, 371, 651, 808
CviQI GTAC 2 cut(s) 213, 385
DdeI CTNAG 1 cut(s) 573
DpnI GATC 3 cut(s) 243, 591, 634
DpnII GATC 3 cut(s) 241, 589, 632
Eam1104I CTCTTC 2 cut(s) 130, 808
EarI CTCTTC 2 cut(s) 130, 808
Eco130I CCWWGG 1 cut(s) 807
Eco24I GRGCYC 1 cut(s) 776
Eco32I GATATC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 120, 336
Eco57I CTGAAG 1 cut(s) 636
Eco88I CYCGRG 2 cut(s) 669, 775
EcoO109I RGGNCCY 1 cut(s) 772
EcoRI GAATTC 1 cut(s) 515
EcoRV GATATC 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 776
ErhI CCWWGG 1 cut(s) 807
FaeI CATG 4 cut(s) 23, 374, 654, 811
FaqI GGGAC 2 cut(s) 669, 805
FatI CATG 4 cut(s) 19, 370, 650, 807
FauNDI CATATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 730
FokI GGATG 3 cut(s) 297, 545, 657
FriOI GRGCYC 1 cut(s) 776
Fsp4HI GCNGC 1 cut(s) 730
FspBI CTAG 2 cut(s) 260, 795
GlaI GCGC 2 cut(s) 375, 733
GluI GCNGC 1 cut(s) 730
GsuI CTGGAG 1 cut(s) 463
HaeIII GGCC 3 cut(s) 668, 702, 774
HapII CCGG 3 cut(s) 118, 334, 670
HgaI GACGC 1 cut(s) 486
HhaI GCGC 2 cut(s) 376, 734
Hin1II CATG 4 cut(s) 23, 374, 654, 811
Hin6I GCGC 2 cut(s) 374, 732
HinP1I GCGC 2 cut(s) 374, 732
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 3 cut(s) 320, 453, 554
HpaII CCGG 3 cut(s) 118, 334, 670
HphI GGTGA 2 cut(s) 356, 796
Hpy166II GTNNAC 1 cut(s) 695
Hpy188I TCNGA 5 cut(s) 45, 302, 458, 476, 514
Hpy8I GTNNAC 1 cut(s) 695
HpyAV CCTTC 2 cut(s) 151, 658
HpyCH4III ACNGT 2 cut(s) 217, 741
HpyCH4IV ACGT 3 cut(s) 166, 658, 697
HpyCH4V TGCA 3 cut(s) 107, 205, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 410
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 3 cut(s) 166, 658, 697
Hsp92II CATG 4 cut(s) 23, 374, 654, 811
HspAI GCGC 2 cut(s) 374, 732
Kzo9I GATC 3 cut(s) 241, 589, 632
LmnI GCTCC 2 cut(s) 372, 715
Lsp1109I GCAGC 1 cut(s) 716
MaeI CTAG 2 cut(s) 260, 795
MaeII ACGT 3 cut(s) 166, 658, 697
MaeIII GTNAC 2 cut(s) 78, 89
MalI GATC 3 cut(s) 243, 591, 634
MboI GATC 3 cut(s) 241, 589, 632
MboII GAAGA 9 cut(s) 117, 209, 251, 277, 321, 511, 575, 629, 825
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 1 cut(s) 776
MluCI AATT 4 cut(s) 200, 325, 515, 622
MlyI GAGTC 1 cut(s) 447
MnlI CCTC 5 cut(s) 133, 429, 523, 760, 809
MseI TTAA 3 cut(s) 162, 827, 847
MspI CCGG 3 cut(s) 118, 334, 670
MspR9I CCNGG 3 cut(s) 334, 670, 671
Mva1269I GAATGC 2 cut(s) 616, 786
MwoI GCNNNNNNNGC 2 cut(s) 373, 410
NciI CCSGG 3 cut(s) 334, 670, 671
NcoI CCATGG 1 cut(s) 807
NdeI CATATG 1 cut(s) 99
NdeII GATC 3 cut(s) 241, 589, 632
NlaIII CATG 4 cut(s) 23, 374, 654, 811
NlaIV GGNNCC 2 cut(s) 634, 774
NmuCI GTSAC 1 cut(s) 78
PctI GAATGC 2 cut(s) 616, 786
PfeI GAWTC 2 cut(s) 320, 554
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 1 cut(s) 731
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
PshAI GACNNNNGTC 1 cut(s) 470
PspN4I GGNNCC 2 cut(s) 634, 774
PspOMI GGGCCC 1 cut(s) 772
PspPI GGNCC 5 cut(s) 120, 336, 667, 772, 773
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 632
RsaI GTAC 2 cut(s) 214, 386
RsaNI GTAC 2 cut(s) 213, 385
SaqAI TTAA 3 cut(s) 162, 827, 847
SatI GCNGC 1 cut(s) 730
Sau3AI GATC 3 cut(s) 241, 589, 632
Sau96I GGNCC 5 cut(s) 120, 336, 667, 772, 773
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 3 cut(s) 334, 670, 671
SduI GDGCHC 1 cut(s) 776
SetI ASST 9 cut(s) 135, 162, 169, 261, 346, 369, 661, 700, 731
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 2 cut(s) 120, 336
SmaI CCCGGG 1 cut(s) 671
Sse9I AATT 4 cut(s) 200, 325, 515, 622
SsiI CCGC 2 cut(s) 413, 719
SspMI CTAG 2 cut(s) 260, 795
StyD4I CCNGG 3 cut(s) 332, 668, 669
StyI CCWWGG 1 cut(s) 807
TaaI ACNGT 2 cut(s) 217, 741
TaiI ACGT 3 cut(s) 169, 661, 700
TaqI TCGA 1 cut(s) 519
TasI AATT 4 cut(s) 200, 325, 515, 622
TfiI GAWTC 2 cut(s) 320, 554
Tru1I TTAA 3 cut(s) 162, 827, 847
Tru9I TTAA 3 cut(s) 162, 827, 847
TscAI CASTG 2 cut(s) 187, 746
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 1 cut(s) 729
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 4 cut(s) 89, 340, 567, 623
TspGWI ACGGA 1 cut(s) 481
TspMI CCCGGG 1 cut(s) 669
TspRI CASTG 2 cut(s) 187, 746
Van91I CCANNNNNTGG 1 cut(s) 376
VpaK11BI GGWCC 2 cut(s) 120, 336
XapI RAATTY 2 cut(s) 515, 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XmaI CCCGGG 1 cut(s) 669
XspI CTAG 2 cut(s) 260, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.