Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005397

Physical Location & Seq

Genomic Coordinates Forward (+)

64830515 .. 64837438

Gene Structure 6924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG437600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACTCGATGCAAAGCTTCAATCTTTGACCACGGCGGAGGACAGACTCGATCCCGCCGGCACAACAGGACCAGCATCAGGATCGTGACCTGTATTCTTCATAAGTTGGGGGAGATGGGTAATGGCAATGGTGCCATAGACAATGTAGATGATGCCGATAAGCTCACATTCTTTGGAGGATTTTGGAACTACTTCAGCCTGGAGTATGTTGCTGCCCGAGGATGTGGAAATCACTGCTTTCAACCTACTCAAAGGGTATGGGGACTTCGTTTCGAGTTTATTGATGGTGAAGAAGAGGTTGTGAAGGCCCGGGGATCCAAGAAAGGATGGGCATGGGGACGTGGGAAGGCCTGGGGACGTGGCGCGAGCCAGAGTGGACGTGGCCTGATTGCTCCATCTCCGCAATCAAGCTGTGCCATACAGTGTGAAGCATCTGCCAAACCAAATACAAAGGGCCCGAGAATGCCAGACGGGACTAGGGGTTTCACCATGGGAAGAGGCAAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

La PAM2 RRM_1

Protein Analysis

169

Amino Acids

18.48

Weight (kDa)

9.93

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19090 AT3G19090
fragaria_vesca	FvH4_2g06870 FvH4_2g06870
malus_domestica	MD05G1074900.v1.1 MD10G1089400.v1.1
prunus_persica	Prupe.8G116300_v2.0.a1 Prupe.8G116300_v2.0.a1 Prupe.8G116300_v2.0.a1
pyrus_communis	pycom05g06810 pycom10g07290
rosa_chinensis	RchiOBHm_Chr6g0259181
rosa_laevigata	RLG00000014551
rosa_multiflora	Rmu_co8316895.1_g000001 Rmu_sc0002723.1_g000050
rosa_roxburghii	Rroxscaffold_7G00206310 Rroxscaffold_7G00206480
rosa_rugosa	Rorug05G0585400 Rorug05G0585400
rosa_samantha	Rh1AG078000 Rh1DG082900 Rh2AG437600 Rh2BG446100 Rh2DG456300 Rh6AG102400 Rh6BG094700 Rh6CG091800 Rh6DG085800
rosa_wichuraiana	Rw6G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccII	CGCG	1 cut(s)	365
AciI	CCGC	3 cut(s)	36, 55, 401
AclWI	GGATC	4 cut(s)	45, 89, 309, 322
AcuI	CTGAAG	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	21, 242
AjiI	CACGTC	3 cut(s)	341, 359, 380
AjnI	CCWGG	2 cut(s)	198, 350
AluBI	AGCT	3 cut(s)	17, 163, 411
AluI	AGCT	3 cut(s)	17, 163, 411
AlwI	GGATC	4 cut(s)	45, 89, 309, 322
Ama87I	CYCGRG	3 cut(s)	216, 309, 457
AoxI	GGCC	4 cut(s)	306, 348, 382, 454
ApaI	GGGCCC	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	4 cut(s)	69, 307, 454, 455
AsuC2I	CCSGG	2 cut(s)	310, 311
AsuHPI	GGTGA	2 cut(s)	299, 478
AvaI	CYCGRG	3 cut(s)	216, 309, 457
AvaII	GGWCC	1 cut(s)	69
BaeGI	GKGCMC	1 cut(s)	458
BamHI	GGATCC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	458
BarI	GAAGNNNNNNTAC	2 cut(s)	249, 281
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	4 cut(s)	109, 278, 321, 403
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BciT130I	CCWGG	2 cut(s)	200, 352
BcnI	CCSGG	2 cut(s)	310, 311
BfaI	CTAG	1 cut(s)	477
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	4 cut(s)	200, 310, 311, 352
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	3 cut(s)	216, 309, 457
BmgBI	CACGTC	3 cut(s)	341, 359, 380
BmgT120I	GGNCC	4 cut(s)	69, 307, 454, 455
BmiI	GGNNCC	3 cut(s)	133, 316, 456
BmrFI	CCNGG	4 cut(s)	200, 310, 311, 352
BmsI	GCATC	3 cut(s)	84, 142, 440
BpmI	CTGGAG	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	310, 311
BsaJI	CCNNGG	6 cut(s)	31, 217, 309, 310, 351, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	200, 352
BseDI	CCNNGG	6 cut(s)	31, 217, 309, 310, 351, 489
BseGI	GGATG	2 cut(s)	227, 332
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	4 cut(s)	308, 350, 384, 456
BshNI	GGYRCC	1 cut(s)	131
BsiHKCI	CYCGRG	3 cut(s)	216, 309, 457
BsiSI	CCGG	2 cut(s)	58, 310
BslFI	GGGAC	4 cut(s)	276, 351, 369, 487
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmFI	GGGAC	4 cut(s)	276, 351, 369, 487
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	4 cut(s)	308, 350, 384, 456
BsoBI	CYCGRG	3 cut(s)	216, 309, 457
Bsp120I	GGGCCC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp143I	GATC	3 cut(s)	50, 81, 314
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	3 cut(s)	36, 55, 401
BspANI	GGCC	4 cut(s)	308, 350, 384, 456
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	3 cut(s)	133, 316, 456
BspPI	GGATC	4 cut(s)	45, 89, 309, 322
BspT107I	GGYRCC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	57
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	6 cut(s)	31, 217, 309, 310, 351, 489
BssMI	GATC	3 cut(s)	50, 81, 314
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	200, 352
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	2 cut(s)	288, 490
BstC8I	GCNNGC	3 cut(s)	59, 367, 503
BstDSI	CCRYGG	2 cut(s)	31, 489
BstF5I	GGATG	2 cut(s)	227, 332
BstFNI	CGCG	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	3 cut(s)	53, 84, 317
BstMBI	GATC	3 cut(s)	50, 81, 314
BstNI	CCWGG	2 cut(s)	200, 352
BstSCI	CCNGG	4 cut(s)	198, 308, 309, 350
BstSLI	GKGCMC	1 cut(s)	458
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BsuRI	GGCC	4 cut(s)	308, 350, 384, 456
BtgI	CCRYGG	2 cut(s)	31, 489
BtrI	CACGTC	3 cut(s)	341, 359, 380
BtsCI	GGATG	2 cut(s)	227, 332
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	232, 428
Cac8I	GCNNGC	3 cut(s)	59, 367, 503
CfoI	GCGC	1 cut(s)	365
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	4 cut(s)	69, 307, 454, 455
Cfr9I	CCCGGG	1 cut(s)	309
CviAII	CATG	2 cut(s)	333, 490
DpnI	GATC	3 cut(s)	52, 83, 316
DpnII	GATC	3 cut(s)	50, 81, 314
Eam1104I	CTCTTC	2 cut(s)	288, 490
EarI	CTCTTC	2 cut(s)	288, 490
EciI	GGCGGA	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	489
Eco147I	AGGCCT	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	178
Eco88I	CYCGRG	3 cut(s)	216, 309, 457
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	198, 350
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	2 cut(s)	336, 493
FaiI	YATR	7 cut(s)	102, 137, 207, 259, 334, 419, 491
FaqI	GGGAC	4 cut(s)	276, 351, 369, 487
FatI	CATG	2 cut(s)	332, 489
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	2 cut(s)	234, 339
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	4 cut(s)	308, 350, 384, 456
HapII	CCGG	2 cut(s)	58, 310
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	2 cut(s)	336, 493
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	4, 46
HpaII	CCGG	2 cut(s)	58, 310
HphI	GGTGA	2 cut(s)	299, 478
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188III	TCNNGA	2 cut(s)	79, 85
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	2 cut(s)	298, 340
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4IV	ACGT	3 cut(s)	340, 358, 379
HpyCH4V	TGCA	1 cut(s)	12
HpySE526I	ACGT	3 cut(s)	340, 358, 379
Hsp92II	CATG	2 cut(s)	336, 493
HspAI	GCGC	1 cut(s)	363
KroI	GCCGGC	1 cut(s)	57
KroNI	GCCGGC	1 cut(s)	59
Kzo9I	GATC	3 cut(s)	50, 81, 314
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	3 cut(s)	84, 142, 440
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	3 cut(s)	340, 358, 379
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	52, 83, 316
MboI	GATC	3 cut(s)	50, 81, 314
MboII	GAAGA	4 cut(s)	89, 302, 305, 507
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	458
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	5 cut(s)	32, 170, 212, 289, 491
MroNI	GCCGGC	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	508
MspI	CCGG	2 cut(s)	58, 310
MspR9I	CCNGG	4 cut(s)	200, 310, 311, 352
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	200, 352
MvnI	CGCG	1 cut(s)	365
NaeI	GCCGGC	1 cut(s)	59
NciI	CCSGG	2 cut(s)	310, 311
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	3 cut(s)	50, 81, 314
NgoMIV	GCCGGC	1 cut(s)	57
NlaIII	CATG	2 cut(s)	336, 493
NlaIV	GGNNCC	3 cut(s)	133, 316, 456
NmuCI	GTSAC	1 cut(s)	85
PceI	AGGCCT	1 cut(s)	350
PctI	GAATGC	1 cut(s)	468
PdiI	GCCGGC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	198, 350
PspGI	CCWGG	2 cut(s)	198, 350
PspN4I	GGNNCC	3 cut(s)	133, 316, 456
PspOMI	GGGCCC	1 cut(s)	454
PspPI	GGNCC	4 cut(s)	69, 307, 454, 455
PsuI	RGATCY	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	508
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	3 cut(s)	50, 81, 314
Sau96I	GGNCC	4 cut(s)	69, 307, 454, 455
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	4 cut(s)	200, 310, 311, 352
SduI	GDGCHC	1 cut(s)	458
SetI	ASST	9 cut(s)	19, 92, 165, 247, 300, 343, 361, 382, 413
SfaNI	GCATC	3 cut(s)	84, 142, 440
SinI	GGWCC	1 cut(s)	69
SmaI	CCCGGG	1 cut(s)	311
SseBI	AGGCCT	1 cut(s)	350
SsiI	CCGC	3 cut(s)	36, 55, 401
SspMI	CTAG	1 cut(s)	477
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	4 cut(s)	198, 308, 309, 350
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	423
TaiI	ACGT	3 cut(s)	343, 361, 382
TaqI	TCGA	3 cut(s)	7, 49, 273
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TscAI	CASTG	2 cut(s)	239, 428
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	89
TspMI	CCCGGG	1 cut(s)	309
TspRI	CASTG	2 cut(s)	239, 428
VpaK11BI	GGWCC	1 cut(s)	69
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XmaI	CCCGGG	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.