Rroxscaffold_7G00206310

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005397
Physical Location & Seq
Reverse (-)
56034756 .. 56037770
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206310.1

Sequence Viewer

Length: 1251 bp
ATGGCACAGGCAAAACCTGTGGAGAAACCCCAAGAATCCTCTGACATGGAAGTGAAAGATACAGGGAACACTACTTCCTTCAAATTCAATGCTCAGGCACCTGAATTTGTTCCCAGATCGCATACCCAAATGCCGATTTCGGGTTATTTCTATCCCTGCTTTCACTTTCTTGGTGACACTGCTTCCCCGGATTGGTTTTATATTGGGGACCAAGAATTACCTCCTTATTTGATCTCCAATCCCAATATTCCTATAACCAATCGATCCAAGAATGTACTACCCGATGAGCTTCAGCAGAAAATCATCAAACAGGTGGAGTACCAGTTCAGTGACATGAGTCTGTTAGCAAATGAATCATTAGCAAAACACATGAGTAAAGATCCTGAAGGATATGTTCCGATATCTGTTGTTGCTTCTACGAAAAAGATGAAGTCACTTATTAGTAACAACCATATGCTTGCACAAGCACTCCGGTCCTCTTCAAAGCTTGTTGTAAGTGATGATGGAAAGAAGGTTAAACGTAAGCACCCTTTCACTGAAAAAGACAAAGAAGAATTGCAGTCTCGTACTGTTGTGGCAGAGAACTTGCCAGAAGATCACTCTCATCAAAACCTAGAGAAGATATTTAGTGTGGTTGGGAGAATCATGATCACCGCATATTTATCATATGCAATTGCTGTCAACAACAGTGTGAAAACTATCCGAATATGCCATCCCCACGAATCCAATTCTTCCCGATCCAAAGGTGATTTCATTATTAGCAACAAGCTCCATGCGCTGGTGGAGTACGAGACAACAGACATAGCAGATAAAGCGGTTGATAAGTTGAGTGATGAGAGGAACTGGAGAAAAGGACTCCGAGTAAGGACTTTGGTCAGACGCTCGCCAAAATCCGTTTTGAAGAACAGAAAGTCTGAATTCGATATTTTAGAGGATGATGACACACCACACTATGAATCTGCAGAAGATAGTTCTCAGCCAAGCCACATTGATCTGGTTATTGATAGTATGAATGCTGAAGAAAATTCAATGGGATCCAAGAAAGGATGGGCATGGGGACGTGGGAAGGCCCGGGGGCGTGGTGCGAGCCAGAGTGGACGTGGCCTGATTGCTCCATCTCCTCAATCAAGCTGCGCCATACAGTGTGAAGCCTCTGCCAAACCAAATACAAAGGGCCCGAGAATGCCAGACGGGACTAGGGGTTTCACCATGGGAAGAGGCAAGCCATTAAGAACCACCAGTTCGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

416

Amino Acids

46.42

Weight (kDa)

8.99

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 101 - 159 1.2e-18 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AccB7I CCANNNNNTGG 1 cut(s) 778
AciI CCGC 2 cut(s) 654, 815
AclWI GGATC 5 cut(s) 258, 374, 732, 1029, 1042
AcsI RAATTY 4 cut(s) 83, 104, 917, 1024
AcuI CTGAAG 3 cut(s) 275, 405, 1038
AfaI GTAC 4 cut(s) 276, 320, 568, 788
AfiI CCNNNNNNNGG 3 cut(s) 140, 192, 778
AgsI TTSAA 5 cut(s) 82, 88, 483, 901, 1029
AjiI CACGTC 2 cut(s) 1061, 1100
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AloI GAACNNNNNNTCC 4 cut(s) 59, 91, 308, 340
AluBI AGCT 4 cut(s) 289, 487, 769, 1131
AluI AGCT 4 cut(s) 289, 487, 769, 1131
Alw26I GTCTC 2 cut(s) 567, 785
AlwI GGATC 5 cut(s) 258, 374, 732, 1029, 1042
Ama87I CYCGRG 2 cut(s) 1071, 1177
AoxI GGCC 3 cut(s) 1068, 1102, 1174
ApaI GGGCCC 1 cut(s) 1178
ApeKI GCWGC 1 cut(s) 1131
ApoI RAATTY 4 cut(s) 83, 104, 917, 1024
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 778, 1136
AspS9I GGNCC 5 cut(s) 208, 474, 1069, 1174, 1175
AsuC2I CCSGG 3 cut(s) 188, 1072, 1073
AsuHPI GGTGA 4 cut(s) 185, 643, 758, 1198
AvaI CYCGRG 2 cut(s) 1071, 1177
AvaII GGWCC 2 cut(s) 208, 474
BaeGI GKGCMC 1 cut(s) 1178
BamHI GGATCC 1 cut(s) 1034
BanI GGYRCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 1178
BbvI GCAGC 1 cut(s) 1118
BccI CCATC 4 cut(s) 497, 720, 1041, 1123
BclI TGATCA 1 cut(s) 648
BcnI CCSGG 3 cut(s) 188, 1072, 1073
BcoDI GTCTC 2 cut(s) 567, 785
BfaI CTAG 2 cut(s) 614, 1197
BfmI CTRYAG 1 cut(s) 960
BisI GCNGC 1 cut(s) 1132
BlsI GCNGC 1 cut(s) 1133
Bme1390I CCNGG 3 cut(s) 188, 1072, 1073
Bme18I GGWCC 2 cut(s) 208, 474
BmeT110I CYCGRG 2 cut(s) 1071, 1177
BmgBI CACGTC 2 cut(s) 1061, 1100
BmgT120I GGNCC 5 cut(s) 208, 474, 1069, 1174, 1175
BmiI GGNNCC 4 cut(s) 99, 209, 1036, 1176
BmrFI CCNGG 3 cut(s) 188, 1072, 1073
BoxI GACNNNNGTC 2 cut(s) 336, 872
BpmI CTGGAG 1 cut(s) 865
Bpu10I CCTNAGC 1 cut(s) 93
BpuMI CCSGG 3 cut(s) 188, 1072, 1073
Bsa29I ATCGAT 1 cut(s) 262
BsaJI CCNNGG 4 cut(s) 186, 1071, 1072, 1209
BsaWI WCCGGW 1 cut(s) 471
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 453, 483
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 192, 778
Bse1I ACTGG 3 cut(s) 322, 848, 1239
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 4 cut(s) 186, 1071, 1072, 1209
BseGI GGATG 3 cut(s) 712, 940, 1052
BseLI CCNNNNNNNGG 3 cut(s) 140, 192, 778
BseMII CTCAG 2 cut(s) 107, 989
BseNI ACTGG 3 cut(s) 322, 848, 1239
BseRI GAGGAG 1 cut(s) 1110
BseSI GKGCMC 1 cut(s) 1178
BseXI GCAGC 1 cut(s) 1118
BshFI GGCC 3 cut(s) 1070, 1104, 1176
BshNI GGYRCC 1 cut(s) 97
BshVI ATCGAT 1 cut(s) 262
BsiHKCI CYCGRG 2 cut(s) 1071, 1177
BsiSI CCGG 3 cut(s) 188, 472, 1072
BslFI GGGAC 3 cut(s) 221, 1071, 1207
BslI CCNNNNNNNGG 3 cut(s) 140, 192, 778
BsmAI GTCTC 2 cut(s) 567, 785
BsmFI GGGAC 3 cut(s) 221, 1071, 1207
BsmI GAATGC 2 cut(s) 1018, 1188
BsnI GGCC 3 cut(s) 1070, 1104, 1176
BsoBI CYCGRG 2 cut(s) 1071, 1177
Bsp120I GGGCCC 1 cut(s) 1174
Bsp1286I GDGCHC 1 cut(s) 1178
Bsp143I GATC 9 cut(s) 116, 231, 263, 379, 595, 648, 737, 991, 1034
Bsp19I CCATGG 1 cut(s) 1209
BspACI CCGC 2 cut(s) 654, 815
BspANI GGCC 3 cut(s) 1070, 1104, 1176
BspCNI CTCAG 2 cut(s) 106, 988
BspDI ATCGAT 1 cut(s) 262
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 4 cut(s) 99, 209, 1036, 1176
BspMAI CTGCAG 1 cut(s) 964
BspPI GGATC 5 cut(s) 258, 374, 732, 1029, 1042
BspT107I GGYRCC 1 cut(s) 97
BsrI ACTGG 3 cut(s) 322, 848, 1239
BssECI CCNNGG 4 cut(s) 186, 1071, 1072, 1209
BssMI GATC 9 cut(s) 116, 231, 263, 379, 595, 648, 737, 991, 1034
BssT1I CCWWGG 1 cut(s) 1209
Bst4CI ACNGT 3 cut(s) 571, 689, 1143
Bst6I CTCTTC 2 cut(s) 484, 1210
BstC8I GCNNGC 4 cut(s) 459, 884, 1087, 1223
BstDEI CTNAG 2 cut(s) 93, 975
BstDSI CCRYGG 1 cut(s) 1209
BstF5I GGATG 3 cut(s) 712, 940, 1052
BstHHI GCGC 2 cut(s) 778, 1136
BstKTI GATC 9 cut(s) 119, 234, 266, 382, 598, 651, 740, 994, 1037
BstMAI GTCTC 2 cut(s) 567, 785
BstMBI GATC 9 cut(s) 116, 231, 263, 379, 595, 648, 737, 991, 1034
BstMWI GCNNNNNNNGC 2 cut(s) 775, 812
BstPAI GACNNNNGTC 2 cut(s) 336, 872
BstSCI CCNGG 3 cut(s) 186, 1070, 1071
BstSFI CTRYAG 1 cut(s) 960
BstSLI GKGCMC 1 cut(s) 1178
BstV1I GCAGC 1 cut(s) 1118
BstX2I RGATCY 2 cut(s) 379, 1034
BstYI RGATCY 2 cut(s) 379, 1034
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 3 cut(s) 1070, 1104, 1176
BsuTUI ATCGAT 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 1209
BtrI CACGTC 2 cut(s) 1061, 1100
BtsCI GGATG 3 cut(s) 712, 940, 1052
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 5 cut(s) 177, 334, 534, 694, 1148
Cac8I GCNNGC 4 cut(s) 459, 884, 1087, 1223
CciI TCATGA 1 cut(s) 645
CfoI GCGC 2 cut(s) 778, 1136
Cfr13I GGNCC 5 cut(s) 208, 474, 1069, 1174, 1175
Cfr9I CCCGGG 1 cut(s) 1071
ClaI ATCGAT 1 cut(s) 262
CseI GACGC 1 cut(s) 888
Csp6I GTAC 4 cut(s) 275, 319, 567, 787
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 7 cut(s) 46, 334, 370, 646, 773, 1053, 1210
CviQI GTAC 4 cut(s) 275, 319, 567, 787
DdeI CTNAG 2 cut(s) 93, 975
DpnI GATC 9 cut(s) 118, 233, 265, 381, 597, 650, 739, 993, 1036
DpnII GATC 9 cut(s) 116, 231, 263, 379, 595, 648, 737, 991, 1034
Eam1104I CTCTTC 2 cut(s) 484, 1210
EarI CTCTTC 2 cut(s) 484, 1210
Eco130I CCWWGG 1 cut(s) 1209
Eco24I GRGCYC 1 cut(s) 1178
Eco32I GATATC 1 cut(s) 402
Eco47I GGWCC 2 cut(s) 208, 474
Eco57I CTGAAG 3 cut(s) 275, 405, 1038
Eco88I CYCGRG 2 cut(s) 1071, 1177
EcoO109I RGGNCCY 1 cut(s) 1174
EcoRI GAATTC 1 cut(s) 917
EcoRV GATATC 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 1209
EcoT38I GRGCYC 1 cut(s) 1178
ErhI CCWWGG 1 cut(s) 1209
FaeI CATG 7 cut(s) 49, 337, 373, 649, 776, 1056, 1213
FaqI GGGAC 3 cut(s) 221, 1071, 1207
FatI CATG 7 cut(s) 45, 333, 369, 645, 772, 1052, 1209
FauNDI CATATG 2 cut(s) 453, 667
FbaI TGATCA 1 cut(s) 648
Fnu4HI GCNGC 1 cut(s) 1132
FokI GGATG 3 cut(s) 699, 947, 1059
FriOI GRGCYC 1 cut(s) 1178
Fsp4HI GCNGC 1 cut(s) 1132
FspBI CTAG 2 cut(s) 614, 1197
GlaI GCGC 2 cut(s) 777, 1135
GluI GCNGC 1 cut(s) 1132
GsuI CTGGAG 1 cut(s) 865
HaeIII GGCC 3 cut(s) 1070, 1104, 1176
HapII CCGG 3 cut(s) 188, 472, 1072
HgaI GACGC 1 cut(s) 888
HhaI GCGC 2 cut(s) 778, 1136
Hin1II CATG 7 cut(s) 49, 337, 373, 649, 776, 1056, 1213
Hin6I GCGC 2 cut(s) 776, 1134
HinP1I GCGC 2 cut(s) 776, 1134
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 7 cut(s) 35, 337, 353, 642, 722, 855, 956
HpaII CCGG 3 cut(s) 188, 472, 1072
HphI GGTGA 4 cut(s) 185, 643, 758, 1198
Hpy166II GTNNAC 2 cut(s) 682, 1097
Hpy188I TCNGA 6 cut(s) 43, 399, 704, 860, 878, 916
Hpy188III TCNNGA 3 cut(s) 383, 646, 735
Hpy8I GTNNAC 2 cut(s) 682, 1097
HpyAV CCTTC 4 cut(s) 88, 380, 505, 1060
HpyCH4III ACNGT 3 cut(s) 571, 689, 1143
HpyCH4IV ACGT 3 cut(s) 520, 1060, 1099
HpyCH4V TGCA 4 cut(s) 461, 559, 671, 962
HpyF10VI GCNNNNNNNGC 2 cut(s) 775, 812
HpyF3I CTNAG 2 cut(s) 93, 975
HpySE526I ACGT 3 cut(s) 520, 1060, 1099
Hsp92II CATG 7 cut(s) 49, 337, 373, 649, 776, 1056, 1213
HspAI GCGC 2 cut(s) 776, 1134
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 9 cut(s) 116, 231, 263, 379, 595, 648, 737, 991, 1034
LmnI GCTCC 2 cut(s) 774, 1117
Lsp1109I GCAGC 1 cut(s) 1118
MaeI CTAG 2 cut(s) 614, 1197
MaeII ACGT 3 cut(s) 520, 1060, 1099
MaeIII GTNAC 4 cut(s) 173, 329, 432, 443
MalI GATC 9 cut(s) 118, 233, 265, 381, 597, 650, 739, 993, 1036
MboI GATC 9 cut(s) 116, 231, 263, 379, 595, 648, 737, 991, 1034
MboII GAAGA 9 cut(s) 471, 563, 605, 631, 723, 913, 977, 1031, 1227
MfeI CAATTG 1 cut(s) 672
MflI RGATCY 2 cut(s) 379, 1034
MhlI GDGCHC 1 cut(s) 1178
MluCI AATT 8 cut(s) 83, 104, 215, 554, 672, 727, 917, 1024
MlyI GAGTC 2 cut(s) 346, 849
MnlI CCTC 8 cut(s) 49, 231, 487, 831, 925, 1131, 1162, 1211
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 3 cut(s) 516, 1229, 1249
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 3 cut(s) 188, 472, 1072
MspR9I CCNGG 3 cut(s) 188, 1072, 1073
MunI CAATTG 1 cut(s) 672
Mva1269I GAATGC 2 cut(s) 1018, 1188
MwoI GCNNNNNNNGC 2 cut(s) 775, 812
NciI CCSGG 3 cut(s) 188, 1072, 1073
NcoI CCATGG 1 cut(s) 1209
NdeI CATATG 2 cut(s) 453, 667
NdeII GATC 9 cut(s) 116, 231, 263, 379, 595, 648, 737, 991, 1034
NlaIII CATG 7 cut(s) 49, 337, 373, 649, 776, 1056, 1213
NlaIV GGNNCC 4 cut(s) 99, 209, 1036, 1176
NmuCI GTSAC 3 cut(s) 173, 329, 432
PagI TCATGA 1 cut(s) 645
PctI GAATGC 2 cut(s) 1018, 1188
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 5 cut(s) 35, 353, 642, 722, 956
PflMI CCANNNNNTGG 1 cut(s) 778
PkrI GCNGC 1 cut(s) 1133
PleI GAGTC 2 cut(s) 345, 849
PpsI GAGTC 2 cut(s) 345, 849
PshAI GACNNNNGTC 2 cut(s) 336, 872
PspN4I GGNNCC 4 cut(s) 99, 209, 1036, 1176
PspOMI GGGCCC 1 cut(s) 1174
PspPI GGNCC 5 cut(s) 208, 474, 1069, 1174, 1175
PstI CTGCAG 1 cut(s) 964
PsuI RGATCY 2 cut(s) 379, 1034
RsaI GTAC 4 cut(s) 276, 320, 568, 788
RsaNI GTAC 4 cut(s) 275, 319, 567, 787
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 3 cut(s) 516, 1229, 1249
SatI GCNGC 1 cut(s) 1132
Sau3AI GATC 9 cut(s) 116, 231, 263, 379, 595, 648, 737, 991, 1034
Sau96I GGNCC 5 cut(s) 208, 474, 1069, 1174, 1175
SchI GAGTC 2 cut(s) 346, 849
ScrFI CCNGG 3 cut(s) 188, 1072, 1073
SduI GDGCHC 1 cut(s) 1178
SfcI CTRYAG 1 cut(s) 960
SinI GGWCC 2 cut(s) 208, 474
SmaI CCCGGG 1 cut(s) 1073
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 8 cut(s) 83, 104, 215, 554, 672, 727, 917, 1024
SsiI CCGC 2 cut(s) 654, 815
SspI AATATT 1 cut(s) 247
SspMI CTAG 2 cut(s) 614, 1197
StyD4I CCNGG 3 cut(s) 186, 1070, 1071
StyI CCWWGG 1 cut(s) 1209
TaaI ACNGT 3 cut(s) 571, 689, 1143
TaiI ACGT 3 cut(s) 523, 1063, 1102
TaqI TCGA 2 cut(s) 262, 921
TasI AATT 8 cut(s) 83, 104, 215, 554, 672, 727, 917, 1024
TatI WGTACW 1 cut(s) 274
TfiI GAWTC 5 cut(s) 35, 353, 642, 722, 956
Tru1I TTAA 3 cut(s) 516, 1229, 1249
Tru9I TTAA 3 cut(s) 516, 1229, 1249
TscAI CASTG 5 cut(s) 184, 334, 541, 694, 1148
TseFI GTSAC 3 cut(s) 173, 329, 432
TseI GCWGC 1 cut(s) 1131
Tsp45I GTSAC 3 cut(s) 173, 329, 432
TspDTI ATGAA 5 cut(s) 366, 443, 742, 969, 1025
TspGWI ACGGA 1 cut(s) 883
TspMI CCCGGG 1 cut(s) 1071
TspRI CASTG 5 cut(s) 184, 334, 541, 694, 1148
Van91I CCANNNNNTGG 1 cut(s) 778
VpaK11BI GGWCC 2 cut(s) 208, 474
XapI RAATTY 4 cut(s) 83, 104, 917, 1024
XcmI CCANNNNNNNNNTGG 1 cut(s) 1097
XmaI CCCGGG 1 cut(s) 1071
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 2 cut(s) 614, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.