Rh1DG082900

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005397
Physical Location & Seq
Forward (+)
15144142 .. 15159036
14895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG082900.1

Sequence Viewer

Length: 897 bp
ATGTCGAGAGAACTTTGCTGCACAGGGGCACAAATACAACAACGAGTTTCAAAAACCAAGCAAATGAACCATATAATGCTTTCGTATAAGAGGAAGGTGACAGTTAAGGAGTTCAAGGGGAAACCATTGGTGTCGTTGAGGGAGTTTTTTACTAAAGAAGGCAATGAGCTCCCTACTTCTAAAGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCGTAAGTAGTCATTCCCAGCTTGCAACTGTATTGCGGAACTCCTCAAAGCTTGTAGTACATGAAGATGGGAAGAAGGTCAAACGCCAGCATCCCCTGACTCAATCAGATATGGAAGAGTTGCAACCTCACATTGTTGTTGCTGAAAATTTGCCTGAGGATCATTGCCACCAAAACCTCATGAAGATTTTCTCTACAGCTGGGAGCTGCCTGAGCCAGTCCATCTTCAGCTGGAATCAGATCTGTCCCCACTGGCACTATAACAGCCGAACGAGCATCAATTTCCTTCAACAGCCCACCTCCCTGCTTATCCCCAATTTCCGGTTCAGCTTCAACAGTTTCGACCCCAGCCTTTTCAGCATTCTTCGCTTCCTGCCCAACACGAATAAGAATCTCACGTCGAGGTTTAGGTTTCTGCACAGCCTTGCTCAAGTTGATTTGCTGGTTTTACACTGGACCAGGAGATGTCGTGTCACAGGGACCGGCTGCAACGTACCAGCTCCCATTTTCGTCAGGCATGCATTAGGCTCCTTTGGCTCCTATACATGGCCATGGTGGCGGAAATGTGCTCTTCAACCTCAGTTTCAAAGAACAAGGGGTATTTTCGATCATCGTCAACAGAGTGTTGACAAGGCATGCAAAGTAATCATCATCGCCGAAGTTGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

298

Amino Acids

34.33

Weight (kDa)

10.01

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC4 PF02229 27 - 61 1.6e-10 Transcriptional Coactivator p15 (PC4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 262, 784
AclWI GGATC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 773
AcsI RAATTY 1 cut(s) 373
AcuI CTGAAG 1 cut(s) 436
AfaI GTAC 2 cut(s) 285, 720
AfiI CCNNNNNNNGG 2 cut(s) 546, 771
AgsI TTSAA 8 cut(s) 51, 115, 211, 515, 559, 800, 812, 890
AjiI CACGTC 1 cut(s) 624
AjnI CCWGG 1 cut(s) 683
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AluBI AGCT 8 cut(s) 169, 247, 277, 425, 432, 456, 555, 725
AluI AGCT 8 cut(s) 169, 247, 277, 425, 432, 456, 555, 725
Alw21I GWGCWC 2 cut(s) 171, 796
AlwI GGATC 1 cut(s) 393
AoxI GGCC 2 cut(s) 222, 773
ApeKI GCWGC 3 cut(s) 18, 432, 711
ApoI RAATTY 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 413
AspS9I GGNCC 3 cut(s) 223, 681, 705
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 2 cut(s) 681, 705
AxyI CCTNAGG 1 cut(s) 381
BaeGI GKGCMC 1 cut(s) 31
BalI TGGCCA 1 cut(s) 775
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 2 cut(s) 171, 796
BbvI GCAGC 3 cut(s) 5, 419, 698
BccI CCATC 2 cut(s) 287, 455
BciT130I CCWGG 1 cut(s) 685
BfmI CTRYAG 1 cut(s) 420
BglI GCCNNNNNGGC 1 cut(s) 781
BglII AGATCT 1 cut(s) 465
BisI GCNGC 3 cut(s) 19, 433, 712
BlsI GCNGC 3 cut(s) 20, 434, 713
Bme1390I CCNGG 1 cut(s) 685
Bme18I GGWCC 2 cut(s) 681, 705
BmgBI CACGTC 1 cut(s) 624
BmgT120I GGNCC 3 cut(s) 223, 681, 705
BmiI GGNNCC 3 cut(s) 706, 754, 763
BmrFI CCNGG 1 cut(s) 685
BmsI GCATC 3 cut(s) 212, 325, 510
Bpu10I CCTNAGC 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 639
BsaJI CCNNGG 1 cut(s) 776
BsaWI WCCGGW 1 cut(s) 546
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 2 cut(s) 546, 771
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 3 cut(s) 442, 482, 683
Bse21I CCTNAGG 1 cut(s) 381
Bse3DI GCAATG 2 cut(s) 169, 388
BseBI CCWGG 1 cut(s) 685
BseDI CCNNGG 1 cut(s) 776
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 2 cut(s) 546, 771
BseMI GCAATG 2 cut(s) 169, 388
BseMII CTCAG 3 cut(s) 372, 428, 818
BseNI ACTGG 3 cut(s) 442, 482, 683
BseRI GAGGAG 1 cut(s) 259
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 3 cut(s) 5, 419, 698
BseYI CCCAGC 3 cut(s) 243, 425, 572
BsgI GTGCAG 2 cut(s) 4, 626
BshFI GGCC 2 cut(s) 224, 775
BsiHKAI GWGCWC 2 cut(s) 171, 796
BsiSI CCGG 2 cut(s) 547, 708
BslFI GGGAC 2 cut(s) 456, 718
BslI CCNNNNNNNGG 2 cut(s) 546, 771
BsmFI GGGAC 2 cut(s) 456, 718
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 2 cut(s) 224, 775
Bsp1286I GDGCHC 3 cut(s) 31, 171, 796
Bsp143I GATC 3 cut(s) 385, 465, 832
Bsp19I CCATGG 1 cut(s) 776
BspACI CCGC 2 cut(s) 262, 784
BspANI GGCC 2 cut(s) 224, 775
BspCNI CTCAG 3 cut(s) 373, 429, 817
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 3 cut(s) 706, 754, 763
BspPI GGATC 1 cut(s) 393
BspQI GCTCTTC 1 cut(s) 801
BsrDI GCAATG 2 cut(s) 169, 388
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 3 cut(s) 442, 482, 683
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 1 cut(s) 776
BssMI GATC 3 cut(s) 385, 465, 832
BssT1I CCWWGG 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 685
Bst4CI ACNGT 3 cut(s) 103, 256, 563
Bst6I CTCTTC 2 cut(s) 336, 801
BstC8I GCNNGC 4 cut(s) 249, 314, 744, 862
BstDEI CTNAG 3 cut(s) 381, 437, 804
BstDSI CCRYGG 1 cut(s) 776
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 3 cut(s) 388, 468, 835
BstMBI GATC 3 cut(s) 385, 465, 832
BstMWI GCNNNNNNNGC 6 cut(s) 438, 498, 582, 591, 759, 781
BstNI CCWGG 1 cut(s) 685
BstNSI RCATGY 2 cut(s) 746, 864
BstSCI CCNGG 1 cut(s) 683
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 5, 419, 698
BstX2I RGATCY 1 cut(s) 465
BstYI RGATCY 1 cut(s) 465
Bsu36I CCTNAGG 1 cut(s) 381
BsuRI GGCC 2 cut(s) 224, 775
BtgI CCRYGG 1 cut(s) 776
BtgZI GCGATG 1 cut(s) 862
BtrI CACGTC 1 cut(s) 624
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 475, 676
Cac8I GCNNGC 4 cut(s) 249, 314, 744, 862
CciI TCATGA 1 cut(s) 405
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 3 cut(s) 223, 681, 705
Csp6I GTAC 2 cut(s) 284, 719
CviAII CATG 6 cut(s) 287, 406, 743, 771, 777, 861
CviQI GTAC 2 cut(s) 284, 719
DdeI CTNAG 3 cut(s) 381, 437, 804
DpnI GATC 3 cut(s) 387, 467, 834
DpnII GATC 3 cut(s) 385, 465, 832
EaeI YGGCCR 1 cut(s) 773
Eam1104I CTCTTC 2 cut(s) 336, 801
EarI CTCTTC 2 cut(s) 336, 801
EciI GGCGGA 1 cut(s) 799
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 776
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 681, 705
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 436
Eco81I CCTNAGG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 683
EcoT14I CCWWGG 1 cut(s) 776
EcoT22I ATGCAT 1 cut(s) 748
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 776
FaeI CATG 6 cut(s) 290, 409, 746, 774, 780, 864
FaqI GGGAC 2 cut(s) 456, 718
FatI CATG 6 cut(s) 286, 405, 742, 770, 776, 860
Fnu4HI GCNGC 3 cut(s) 19, 433, 712
FokI GGATG 1 cut(s) 303
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 3 cut(s) 19, 433, 712
GluI GCNGC 3 cut(s) 19, 433, 712
GsaI CCCAGC 3 cut(s) 247, 429, 576
HaeIII GGCC 2 cut(s) 224, 775
HapII CCGG 2 cut(s) 547, 708
Hin1II CATG 6 cut(s) 290, 409, 746, 774, 780, 864
HincII GTYRAC 2 cut(s) 842, 853
HindII GTYRAC 2 cut(s) 842, 853
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 3 cut(s) 325, 460, 616
HpaII CCGG 2 cut(s) 547, 708
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 842, 853
Hpy188I TCNGA 2 cut(s) 334, 465
Hpy188III TCNNGA 3 cut(s) 6, 211, 406
Hpy8I GTNNAC 2 cut(s) 842, 853
Hpy99I CGWCG 1 cut(s) 628
HpyAV CCTTC 4 cut(s) 88, 152, 295, 521
HpyCH4III ACNGT 3 cut(s) 103, 256, 563
HpyCH4IV ACGT 2 cut(s) 623, 717
HpyCH4V TGCA 8 cut(s) 21, 203, 251, 349, 643, 714, 746, 864
HpyF10VI GCNNNNNNNGC 6 cut(s) 438, 498, 582, 591, 759, 781
HpyF3I CTNAG 3 cut(s) 381, 437, 804
HpySE526I ACGT 2 cut(s) 623, 717
Hsp92II CATG 6 cut(s) 290, 409, 746, 774, 780, 864
Kzo9I GATC 3 cut(s) 385, 465, 832
LguI GCTCTTC 1 cut(s) 801
LmnI GCTCC 5 cut(s) 174, 429, 730, 758, 767
Lsp1109I GCAGC 3 cut(s) 5, 419, 698
LweI GCATC 3 cut(s) 212, 325, 510
MaeII ACGT 2 cut(s) 623, 717
MaeIII GTNAC 2 cut(s) 97, 697
MalI GATC 3 cut(s) 387, 467, 834
MboI GATC 3 cut(s) 385, 465, 832
MboII GAAGA 8 cut(s) 226, 302, 310, 353, 421, 442, 581, 788
MflI RGATCY 1 cut(s) 465
MhlI GDGCHC 3 cut(s) 31, 171, 796
MlsI TGGCCA 1 cut(s) 775
MluCI AATT 3 cut(s) 373, 505, 541
MluNI TGGCCA 1 cut(s) 775
MlyI GAGTC 1 cut(s) 319
Mox20I TGGCCA 1 cut(s) 775
Mph1103I ATGCAT 1 cut(s) 748
MroXI GAANNNNTTC 1 cut(s) 413
MscI TGGCCA 1 cut(s) 775
MseI TTAA 2 cut(s) 105, 219
MslI CAYNNNNRTG 2 cut(s) 291, 775
Msp20I TGGCCA 1 cut(s) 775
MspA1I CMGCKG 2 cut(s) 425, 456
MspI CCGG 2 cut(s) 547, 708
MspR9I CCNGG 1 cut(s) 685
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 1 cut(s) 685
MwoI GCNNNNNNNGC 6 cut(s) 438, 498, 582, 591, 759, 781
NcoI CCATGG 1 cut(s) 776
NdeII GATC 3 cut(s) 385, 465, 832
NlaIII CATG 6 cut(s) 290, 409, 746, 774, 780, 864
NlaIV GGNNCC 3 cut(s) 706, 754, 763
NmuCI GTSAC 2 cut(s) 97, 697
NsiI ATGCAT 1 cut(s) 748
NspI RCATGY 2 cut(s) 746, 864
PaeI GCATGC 2 cut(s) 746, 864
PagI TCATGA 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 801
PctI GAATGC 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 2 cut(s) 460, 616
PkrI GCNGC 3 cut(s) 20, 434, 713
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 683
PspFI CCCAGC 3 cut(s) 243, 425, 572
PspGI CCWGG 1 cut(s) 683
PspN4I GGNNCC 3 cut(s) 706, 754, 763
PspPI GGNCC 3 cut(s) 223, 681, 705
PsuI RGATCY 1 cut(s) 465
PvuII CAGCTG 2 cut(s) 425, 456
RsaI GTAC 2 cut(s) 285, 720
RsaNI GTAC 2 cut(s) 284, 719
RseI CAYNNNNRTG 2 cut(s) 291, 775
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 801
SaqAI TTAA 2 cut(s) 105, 219
SatI GCNGC 3 cut(s) 19, 433, 712
Sau3AI GATC 3 cut(s) 385, 465, 832
Sau96I GGNCC 3 cut(s) 223, 681, 705
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 685
SduI GDGCHC 3 cut(s) 31, 171, 796
SfaNI GCATC 3 cut(s) 212, 325, 510
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 2 cut(s) 681, 705
SmiMI CAYNNNNRTG 2 cut(s) 291, 775
SmlI CTYRAG 1 cut(s) 654
SmoI CTYRAG 1 cut(s) 654
SphI GCATGC 2 cut(s) 746, 864
Sse9I AATT 3 cut(s) 373, 505, 541
SsiI CCGC 2 cut(s) 262, 784
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 683
StyI CCWWGG 1 cut(s) 776
TaaI ACNGT 3 cut(s) 103, 256, 563
TaiI ACGT 2 cut(s) 626, 720
TaqI TCGA 4 cut(s) 5, 567, 626, 831
TasI AATT 3 cut(s) 373, 505, 541
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 2 cut(s) 460, 616
Tru1I TTAA 2 cut(s) 105, 219
Tru9I TTAA 2 cut(s) 105, 219
TscAI CASTG 2 cut(s) 482, 683
TseFI GTSAC 2 cut(s) 97, 697
TseI GCWGC 3 cut(s) 18, 432, 711
Tsp45I GTSAC 2 cut(s) 97, 697
TspDTI ATGAA 3 cut(s) 80, 303, 422
TspRI CASTG 2 cut(s) 482, 683
VpaK11BI GGWCC 2 cut(s) 681, 705
XapI RAATTY 1 cut(s) 373
XceI RCATGY 2 cut(s) 746, 864
XmnI GAANNNNTTC 1 cut(s) 413
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.