Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Forward (+)

7056903 .. 7058950

Gene Structure 2048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCAATGGTTGTTCCAAAAGAAGGGCTTGTGGTTATGGACAAGGAATCTGTTTCTTCAGCTTCATCGGATTCTCATCTTCGTCTCCAACCTCACTTTCCTGACTTCACTATTCCTGTTAAAGATTTCTTCAAGTCTAGGGAAGCCCGTGAGTTTCTTAGTGGGGCTTTAGCTGGAGCTATGACCAAAGCTGTTCTTGCTCCACTTGAGACTATAAGGACAAGAATGATTGTTGGTGTTGGATCGAGAAGCATTCCAGGTAGTTTTCTGGAAGTTGTACAGAAGCAAGGGTGGCAAGGTCTTTGGGCTGGCAATGAAATCAATATGATTCGAATCATTCCAACGCAAGCAATTGAGTTAGGGACATTCGAGTGGGTAAAACGTGCAATGACATCAGCTCAAGTGAAGTTGAAGAAGATTGAGGACGCCAAGATTGAAATCGGTGATTTTAGTTTCAGTCCGTCCATATCGTGGATCTCTCCTGTTGCTGTGGCTGGTGCATCTGCTGGTATTGCCAGTACACTTGTTTGCCATCCTCTCGAAGTCCTCAAGGATAGATTGACTGTGAGCCCTGAGATTTATCCAAGCTTAAGCCTTGCAATTCCAAGAATTTTTAGAGCCGATGGAATCCGTGGATTTTACGCTGGCTTAGGACCAACATTGGTCGGGATGCTTCCTTACAGCACATGTTATTACTTCATGTATGACAAAATGAAGACCTCATACTGCAAATCCAAGAACAAAAAGGCTTTAAGCCGTCCAGAGATGCTTGTTCTTGGAGCTTTAGCTGGTCTAACGGCGAGCACCATAAGCTTCCCCTTGGAAGTAGCGCGGAAGCGGTTGATGGTTGGAGCTCTGAAGGGAGAATGCCCACCAAACATGGCTGCAGCAATAGCAGAAGTAGTGAAGAAAGAAGGAGTGATGGGACTCTACAGAGGATGGGGAGCAAGTTGTTTGAAAGTCATGCCATCTTCAGGCATTACTTGGGTCTTCTATGAAGCCTGGAAAGATATTTTGCTTGCCGCCAACACCAAACCACTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

348

Amino Acids

37.9

Weight (kDa)

9.44

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	50 - 131	8.1e-19	Mitochondrial carrier protein
Mito_carr	PF00153	163 - 244	4.7e-18	Mitochondrial carrier protein
Mito_carr	PF00153	255 - 340	6e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	471
AccII	CGCG	1 cut(s)	832
AciI	CCGC	3 cut(s)	832, 838, 1023
AclWI	GGATC	2 cut(s)	250, 482
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	3 cut(s)	42, 878, 957
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	2 cut(s)	279, 520
AfiI	CCNNNNNNNGG	3 cut(s)	23, 471, 974
AflII	CTTAAG	1 cut(s)	589
AflIII	ACRYGT	1 cut(s)	686
AgsI	TTSAA	4 cut(s)	133, 412, 437, 958
AjnI	CCWGG	2 cut(s)	256, 1001
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
Alw21I	GWGCWC	2 cut(s)	806, 856
Alw26I	GTCTC	2 cut(s)	89, 203
AlwI	GGATC	2 cut(s)	250, 482
ApeKI	GCWGC	2 cut(s)	884, 887
ApoI	RAATTY	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	832
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	455
AsuII	TTCGAA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	653
BanII	GRGCYC	2 cut(s)	572, 856
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
BbsI	GAAGAC	2 cut(s)	722, 982
Bbv12I	GWGCWC	2 cut(s)	806, 856
BbvI	GCAGC	2 cut(s)	871, 899
BccI	CCATC	6 cut(s)	540, 617, 838, 916, 933, 976
BceAI	ACGGC	2 cut(s)	741, 813
BciT130I	CCWGG	2 cut(s)	258, 1003
BcoDI	GTCTC	2 cut(s)	89, 203
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	2 cut(s)	885, 931
BfrI	CTTAAG	1 cut(s)	589
BisI	GCNGC	3 cut(s)	885, 888, 1023
BlsI	GCNGC	3 cut(s)	886, 889, 1024
Bme1390I	CCNGG	2 cut(s)	258, 1003
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmrFI	CCNGG	2 cut(s)	258, 1003
BmsI	GCATC	3 cut(s)	509, 660, 756
BpiI	GAAGAC	2 cut(s)	722, 982
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	649
Bpu14I	TTCGAA	1 cut(s)	331
BpuEI	CTTGAG	3 cut(s)	227, 384, 533
BsaBI	GATNNNNATC	3 cut(s)	75, 332, 437
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	631, 819
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 471, 974
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	3 cut(s)	12, 319, 393
Bse8I	GATNNNNATC	3 cut(s)	75, 332, 437
BseBI	CCWGG	2 cut(s)	258, 1003
BseDI	CCNNGG	2 cut(s)	631, 819
BseGI	GGATG	3 cut(s)	532, 675, 944
BseJI	GATNNNNATC	3 cut(s)	75, 332, 437
BseLI	CCNNNNNNNGG	3 cut(s)	23, 471, 974
BseMI	GCAATG	3 cut(s)	12, 319, 393
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	2 cut(s)	871, 899
Bsh1236I	CGCG	1 cut(s)	832
BsiHKAI	GWGCWC	2 cut(s)	806, 856
BslFI	GGGAC	2 cut(s)	376, 939
BslI	CCNNNNNNNGG	3 cut(s)	23, 471, 974
BsmAI	GTCTC	2 cut(s)	89, 203
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	376, 939
BsmI	GAATGC	2 cut(s)	252, 872
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	3 cut(s)	572, 806, 856
Bsp1407I	TGTACA	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	242, 474
BspACI	CCGC	3 cut(s)	832, 838, 1023
BspCNI	CTCAG	1 cut(s)	565
BspFNI	CGCG	1 cut(s)	832
BspMAI	CTGCAG	1 cut(s)	889
BspPI	GGATC	2 cut(s)	250, 482
BspT104I	TTCGAA	1 cut(s)	331
BspTI	CTTAAG	1 cut(s)	589
BsrDI	GCAATG	3 cut(s)	12, 319, 393
BsrGI	TGTACA	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	2 cut(s)	631, 819
BssMI	GATC	2 cut(s)	242, 474
BssNI	GRCGYC	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	819
Bst2UI	CCWGG	2 cut(s)	258, 1003
Bst4CI	ACNGT	1 cut(s)	565
BstACI	GRCGYC	1 cut(s)	426
BstAFI	CTTAAG	1 cut(s)	589
BstAUI	TGTACA	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	5 cut(s)	310, 348, 646, 802, 1020
BstDEI	CTNAG	3 cut(s)	158, 573, 649
BstDSI	CCRYGG	1 cut(s)	631
BstF5I	GGATG	3 cut(s)	532, 675, 944
BstFNI	CGCG	1 cut(s)	832
BstHHI	GCGC	1 cut(s)	832
BstKTI	GATC	2 cut(s)	245, 477
BstMAI	GTCTC	2 cut(s)	89, 203
BstMBI	GATC	2 cut(s)	242, 474
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 292, 512, 810, 893
BstNI	CCWGG	2 cut(s)	258, 1003
BstNSI	RCATGY	1 cut(s)	690
BstSCI	CCNGG	2 cut(s)	256, 1001
BstSFI	CTRYAG	2 cut(s)	885, 931
BstUI	CGCG	1 cut(s)	832
BstV1I	GCAGC	2 cut(s)	871, 899
BstV2I	GAAGAC	2 cut(s)	722, 982
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	631
BtsCI	GGATG	3 cut(s)	532, 675, 944
Cac8I	GCNNGC	5 cut(s)	310, 348, 646, 802, 1020
CfoI	GCGC	1 cut(s)	832
Cfr13I	GGNCC	1 cut(s)	653
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	278, 519
CviAII	CATG	4 cut(s)	687, 700, 880, 964
CviQI	GTAC	2 cut(s)	278, 519
DdeI	CTNAG	3 cut(s)	158, 573, 649
DpnI	GATC	2 cut(s)	244, 476
DpnII	GATC	2 cut(s)	242, 474
Ecl136II	GAGCTC	1 cut(s)	854
Eco130I	CCWWGG	1 cut(s)	819
Eco24I	GRGCYC	2 cut(s)	572, 856
Eco47I	GGWCC	1 cut(s)	653
Eco53kI	GAGCTC	1 cut(s)	854
Eco57I	CTGAAG	3 cut(s)	42, 878, 957
EcoICRI	GAGCTC	1 cut(s)	854
EcoRII	CCWGG	2 cut(s)	256, 1001
EcoT14I	CCWWGG	1 cut(s)	819
EcoT38I	GRGCYC	2 cut(s)	572, 856
ErhI	CCWWGG	1 cut(s)	819
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	4 cut(s)	690, 703, 883, 967
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 180, 212
FaqI	GGGAC	2 cut(s)	376, 939
FatI	CATG	4 cut(s)	686, 699, 879, 963
Fnu4HI	GCNGC	3 cut(s)	885, 888, 1023
FokI	GGATG	3 cut(s)	519, 682, 951
FriOI	GRGCYC	2 cut(s)	572, 856
Fsp4HI	GCNGC	3 cut(s)	885, 888, 1023
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	831
GluI	GCNGC	3 cut(s)	885, 888, 1023
GsuI	CTGGAG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	832
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	4 cut(s)	690, 703, 883, 967
Hin6I	GCGC	1 cut(s)	830
HinP1I	GCGC	1 cut(s)	830
HindIII	AAGCTT	2 cut(s)	586, 811
HinfI	GANTC	6 cut(s)	47, 71, 328, 333, 627, 927
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	2 cut(s)	70, 858
Hpy188III	TCNNGA	6 cut(s)	101, 246, 269, 539, 667, 761
Hpy8I	GTNNAC	1 cut(s)	521
HpyAV	CCTTC	3 cut(s)	17, 853, 908
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	5 cut(s)	386, 500, 599, 729, 887
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 292, 512, 810, 893
HpyF3I	CTNAG	3 cut(s)	158, 573, 649
HpySE526I	ACGT	1 cut(s)	382
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	690, 703, 883, 967
HspAI	GCGC	1 cut(s)	830
Kzo9I	GATC	2 cut(s)	242, 474
LmnI	GCTCC	5 cut(s)	176, 205, 779, 851, 944
Lsp1109I	GCAGC	2 cut(s)	871, 899
LweI	GCATC	3 cut(s)	509, 660, 756
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	382
MalI	GATC	2 cut(s)	244, 476
MboI	GATC	2 cut(s)	242, 474
MboII	GAAGA	9 cut(s)	48, 71, 121, 424, 427, 727, 919, 963, 982
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	3 cut(s)	572, 806, 856
MluCI	AATT	3 cut(s)	351, 600, 609
MlyI	GAGTC	1 cut(s)	921
MmeI	TCCRAC	4 cut(s)	112, 220, 365, 829
MnlI	CCTC	6 cut(s)	102, 415, 546, 557, 730, 929
MseI	TTAA	3 cut(s)	120, 590, 752
MslI	CAYNNNNRTG	1 cut(s)	370
MspCI	CTTAAG	1 cut(s)	589
MspR9I	CCNGG	2 cut(s)	258, 1003
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	2 cut(s)	252, 872
MvaI	CCWGG	2 cut(s)	258, 1003
MvnI	CGCG	1 cut(s)	832
MwoI	GCNNNNNNNGC	5 cut(s)	197, 292, 512, 810, 893
NdeII	GATC	2 cut(s)	242, 474
NlaIII	CATG	4 cut(s)	690, 703, 883, 967
NspI	RCATGY	1 cut(s)	690
NspV	TTCGAA	1 cut(s)	331
PciI	ACATGT	1 cut(s)	686
PctI	GAATGC	2 cut(s)	252, 872
PfeI	GAWTC	5 cut(s)	47, 71, 328, 333, 627
PflMI	CCANNNNNTGG	1 cut(s)	471
PkrI	GCNGC	3 cut(s)	886, 889, 1024
PleI	GAGTC	1 cut(s)	921
PpsI	GAGTC	1 cut(s)	921
PscI	ACATGT	1 cut(s)	686
Psp124BI	GAGCTC	1 cut(s)	856
Psp6I	CCWGG	2 cut(s)	256, 1001
PspGI	CCWGG	2 cut(s)	256, 1001
PspPI	GGNCC	1 cut(s)	653
PstI	CTGCAG	1 cut(s)	889
PsuI	RGATCY	1 cut(s)	474
RsaI	GTAC	2 cut(s)	279, 520
RsaNI	GTAC	2 cut(s)	278, 519
RseI	CAYNNNNRTG	1 cut(s)	370
SacI	GAGCTC	1 cut(s)	856
SaqAI	TTAA	3 cut(s)	120, 590, 752
SatI	GCNGC	3 cut(s)	885, 888, 1023
Sau3AI	GATC	2 cut(s)	242, 474
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	1 cut(s)	921
ScrFI	CCNGG	2 cut(s)	258, 1003
SduI	GDGCHC	3 cut(s)	572, 806, 856
SfaNI	GCATC	3 cut(s)	509, 660, 756
SfcI	CTRYAG	2 cut(s)	885, 931
SfuI	TTCGAA	1 cut(s)	331
SinI	GGWCC	1 cut(s)	653
SmiMI	CAYNNNNRTG	1 cut(s)	370
SmlI	CTYRAG	4 cut(s)	206, 399, 548, 589
SmoI	CTYRAG	4 cut(s)	206, 399, 548, 589
Sse9I	AATT	3 cut(s)	351, 600, 609
SsiI	CCGC	3 cut(s)	832, 838, 1023
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	856
StyD4I	CCNGG	2 cut(s)	256, 1001
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	1 cut(s)	565
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	4 cut(s)	245, 331, 369, 540
TasI	AATT	3 cut(s)	351, 600, 609
TatI	WGTACW	2 cut(s)	277, 518
TauI	GCSGC	1 cut(s)	1025
TfiI	GAWTC	5 cut(s)	47, 71, 328, 333, 627
Tru1I	TTAA	3 cut(s)	120, 590, 752
Tru9I	TTAA	3 cut(s)	120, 590, 752
TseI	GCWGC	2 cut(s)	884, 887
TspDTI	ATGAA	5 cut(s)	54, 330, 688, 728, 1011
TspGWI	ACGGA	2 cut(s)	450, 620
Van91I	CCANNNNNTGG	1 cut(s)	471
Vha464I	CTTAAG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	1 cut(s)	609
XceI	RCATGY	1 cut(s)	690
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.