Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Forward (+)

15945289 .. 15948911

Gene Structure 3623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1161600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCATTTGAATCACAGTCTCTGAAGAAGGAGACGAAGTACAGTGGTGGTGGGGTTTGTGGGGATGTGTTCAGTATGGCCATACTTCCCAAAGAGGTTGAGCTTGAGAAGGAGGCTGCCCACCCGAAATTCGAGCTCCGACTTCAGCTCCCTGACCTCTCCCAACCCCTGAGAGATTTATCGAAGAAGAGAGAAGTTGGAGAGTTCTTAAGCGGCGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGAACCAGAATGGTAGTCGGTGTTGGATCTAGACACATTTGTGGCAGTTTCTTAGAGGTCATTGAGAAGCAAGGGTGGCAAGGACTGTGGGCTGGAAATGCGGTCAACATGCTTCGCATAATCCCTACACAAGCTCTTGAGTTTGGAACATTTGAGTGTATTAAACGAGCAATGACATCGACACAAGAAAAGTGGAAGCAGGGTGAATCCCCAAAGGTGCAGATTGGTCGTGTAACCTTGAACTTCTCTATCTCCTGGATTTCCCCTGTCGCTGTGGCTGGTGCTGCTGCTGGAGTTGTTAGCACACTTGTGTGTCATCCCCTTGAAGTTCTAAAGGATCGGCTGACTGTGTCTCCTGAGGCGTATCCCAGTTTAAGCATTGCAATCAGCAAGATTTATAAGGAGGGTGGGATTGCTGCATGCTATTCTGGTCTTTCACCTACACTTATTGGGATGCTTCCTTACAGTACATGTTACTATTTCATGTATGAGAAATTGAAGAAATCCCACTGCCGAGCAAAGAATAAAGAGTCTCTTAACCGTCCTGAGATGCTACTGGTCGGAGCTCTTGCAGGTTTTACGGCTAGCACAATCAGCTTTCCATTGGAGGTGGCCAGGAAACGGCTGATGGTTGGAGCTTTGAAAGGCAAGTGCCCACCGCACATGTTAGTGGCACTTTCAGAAGTCATCCAGGAAGAAGGTTTGCGGGGACTTTACAGAGGGTGGGGTGCAAGCTGCTTGAAGGTCATGCCATCCTCCGGCATCACCTGGATGTTTTATGAAGCTTGGAAGGACATATTGCTTGTTCAGAGACATACCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

364

Amino Acids

39.86

Weight (kDa)

9.23

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	66 - 148	2.4e-19	Mitochondrial carrier protein
Mito_carr	PF00153	180 - 258	4.7e-19	Mitochondrial carrier protein
Mito_carr	PF00153	272 - 357	1.5e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	666, 1090
Acc36I	ACCTGC	1 cut(s)	830
AciI	CCGC	4 cut(s)	213, 368, 926, 973
AclWI	GGATC	2 cut(s)	301, 612
AcoI	YGGCCR	2 cut(s)	78, 879
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	2 cut(s)	44, 128
AfaI	GTAC	2 cut(s)	41, 736
AfiI	CCNNNNNNNGG	2 cut(s)	888, 1025
AflII	CTTAAG	1 cut(s)	208
AflIII	ACRYGT	2 cut(s)	737, 930
AgsI	TTSAA	6 cut(s)	11, 508, 593, 766, 910, 1009
AjnI	CCWGG	4 cut(s)	521, 881, 957, 1034
AleI	CACNNNNGTG	3 cut(s)	306, 575, 577
Alw21I	GWGCWC	2 cut(s)	138, 835
Alw26I	GTCTC	6 cut(s)	24, 26, 254, 624, 804, 1072
AlwI	GGATC	2 cut(s)	301, 612
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	78, 879
ApeKI	GCWGC	5 cut(s)	116, 551, 554, 683, 1002
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	3 cut(s)	482, 696, 1024
AsuNHI	GCTAGC	1 cut(s)	851
AxyI	CCTNAGG	1 cut(s)	624
BaeGI	GKGCMC	1 cut(s)	923
BalI	TGGCCA	2 cut(s)	80, 881
BanII	GRGCYC	2 cut(s)	138, 835
Bbv12I	GWGCWC	2 cut(s)	138, 835
BbvI	GCAGC	5 cut(s)	103, 538, 541, 670, 989
BccI	CCATC	3 cut(s)	272, 889, 1027
BceAI	ACGGC	2 cut(s)	864, 905
BcgI	CGANNNNNNTGC	4 cut(s)	426, 460, 476, 510
BciT130I	CCWGG	4 cut(s)	523, 883, 959, 1036
BciVI	GTATCC	1 cut(s)	642
BcoDI	GTCTC	6 cut(s)	24, 26, 254, 624, 804, 1072
BfaI	CTAG	2 cut(s)	297, 852
BfoI	RGCGCY	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	830
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	6 cut(s)	117, 214, 552, 555, 684, 1003
BlsI	GCNGC	6 cut(s)	118, 215, 553, 556, 685, 1004
Bme1390I	CCNGG	4 cut(s)	523, 883, 959, 1036
BmrFI	CCNGG	4 cut(s)	523, 883, 959, 1036
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	3 cut(s)	711, 807, 1038
BmtI	GCTAGC	1 cut(s)	855
BmuI	ACTGGG	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	3 cut(s)	125, 278, 425
BsaI	GGTCTC	1 cut(s)	254
BsaXI	ACNNNNNCTCC	6 cut(s)	23, 53, 132, 162, 604, 634
Bsc4I	CCNNNNNNNGG	2 cut(s)	888, 1025
Bse1I	ACTGG	2 cut(s)	636, 828
Bse21I	CCTNAGG	1 cut(s)	624
Bse3DI	GCAATG	3 cut(s)	237, 444, 645
BseBI	CCWGG	4 cut(s)	523, 883, 959, 1036
BseGI	GGATG	6 cut(s)	70, 583, 726, 954, 1019, 1044
BseLI	CCNNNNNNNGG	2 cut(s)	888, 1025
BseMI	GCAATG	3 cut(s)	237, 444, 645
BseMII	CTCAG	3 cut(s)	161, 615, 804
BseNI	ACTGG	2 cut(s)	636, 828
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	923
BseXI	GCAGC	5 cut(s)	103, 538, 541, 670, 989
BsgI	GTGCAG	1 cut(s)	506
BshFI	GGCC	2 cut(s)	80, 881
BsiHKAI	GWGCWC	2 cut(s)	138, 835
BsiSI	CCGG	1 cut(s)	1026
BslFI	GGGAC	1 cut(s)	990
BslI	CCNNNNNNNGG	2 cut(s)	888, 1025
BsmAI	GTCTC	6 cut(s)	24, 26, 254, 624, 804, 1072
BsmBI	CGTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	990
BsnI	GGCC	2 cut(s)	80, 881
Bso31I	GGTCTC	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	138, 835, 923
Bsp143I	GATC	2 cut(s)	293, 604
BspACI	CCGC	4 cut(s)	213, 368, 926, 973
BspANI	GGCC	2 cut(s)	80, 881
BspCNI	CTCAG	3 cut(s)	162, 616, 805
BspMI	ACCTGC	1 cut(s)	830
BspOI	GCTAGC	1 cut(s)	855
BspPI	GGATC	2 cut(s)	301, 612
BspTI	CTTAAG	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	3 cut(s)	237, 444, 645
BsrI	ACTGG	2 cut(s)	636, 828
BssMI	GATC	2 cut(s)	293, 604
Bst2UI	CCWGG	4 cut(s)	523, 883, 959, 1036
Bst4CI	ACNGT	6 cut(s)	18, 44, 354, 616, 734, 809
Bst6I	CTCTTC	1 cut(s)	182
BstAFI	CTTAAG	1 cut(s)	208
BstC8I	GCNNGC	3 cut(s)	688, 853, 1000
BstDEI	CTNAG	4 cut(s)	170, 319, 624, 813
BstF5I	GGATG	6 cut(s)	70, 583, 726, 954, 1019, 1044
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	296, 607
BstMAI	GTCTC	6 cut(s)	24, 26, 254, 624, 804, 1072
BstMBI	GATC	2 cut(s)	293, 604
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 343, 365, 551, 861
BstNI	CCWGG	4 cut(s)	523, 883, 959, 1036
BstNSI	RCATGY	4 cut(s)	379, 690, 741, 934
BstSCI	CCNGG	4 cut(s)	521, 881, 957, 1034
BstSLI	GKGCMC	1 cut(s)	923
BstV1I	GCAGC	5 cut(s)	103, 538, 541, 670, 989
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
Bsu36I	CCTNAGG	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	2 cut(s)	80, 881
BtsCI	GGATG	6 cut(s)	70, 583, 726, 954, 1019, 1044
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	2 cut(s)	49, 775
BveI	ACCTGC	1 cut(s)	830
Cac8I	GCNNGC	3 cut(s)	688, 853, 1000
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	40, 735
CspCI	CAANNNNNGTGG	4 cut(s)	335, 370, 440, 475
CviAII	CATG	6 cut(s)	376, 687, 738, 751, 931, 1015
CviQI	GTAC	2 cut(s)	40, 735
DdeI	CTNAG	4 cut(s)	170, 319, 624, 813
DpnI	GATC	2 cut(s)	295, 606
DpnII	GATC	2 cut(s)	293, 604
EaeI	YGGCCR	2 cut(s)	78, 879
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	2 cut(s)	136, 833
Eco24I	GRGCYC	2 cut(s)	138, 835
Eco31I	GGTCTC	1 cut(s)	254
Eco53kI	GAGCTC	2 cut(s)	136, 833
Eco57I	CTGAAG	2 cut(s)	44, 128
Eco81I	CCTNAGG	1 cut(s)	624
EcoICRI	GAGCTC	2 cut(s)	136, 833
EcoRII	CCWGG	4 cut(s)	521, 881, 957, 1034
EcoT38I	GRGCYC	2 cut(s)	138, 835
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	6 cut(s)	379, 690, 741, 754, 934, 1018
FalI	AAGNNNNNCTT	6 cut(s)	202, 234, 231, 263, 786, 818
FaqI	GGGAC	1 cut(s)	990
FatI	CATG	6 cut(s)	375, 686, 737, 750, 930, 1014
FauI	CCCGC	1 cut(s)	966
Fnu4HI	GCNGC	6 cut(s)	117, 214, 552, 555, 684, 1003
FokI	GGATG	6 cut(s)	77, 570, 733, 941, 1006, 1051
FriOI	GRGCYC	2 cut(s)	138, 835
Fsp4HI	GCNGC	6 cut(s)	117, 214, 552, 555, 684, 1003
FspBI	CTAG	2 cut(s)	297, 852
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	6 cut(s)	117, 214, 552, 555, 684, 1003
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	80, 881
HapII	CCGG	1 cut(s)	1026
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	6 cut(s)	379, 690, 741, 754, 934, 1018
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	1050
HinfI	GANTC	3 cut(s)	11, 473, 797
HpaII	CCGG	1 cut(s)	1026
HphI	GGTGA	3 cut(s)	482, 696, 1024
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	6 cut(s)	24, 140, 269, 830, 949, 1077
Hpy188III	TCNNGA	5 cut(s)	257, 297, 404, 623, 812
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	5 cut(s)	22, 103, 959, 1003, 1051
HpyCH4III	ACNGT	6 cut(s)	18, 44, 354, 616, 734, 809
HpyCH4V	TGCA	5 cut(s)	487, 650, 686, 839, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 343, 365, 551, 861
HpyF3I	CTNAG	4 cut(s)	170, 319, 624, 813
Hsp92II	CATG	6 cut(s)	379, 690, 741, 754, 934, 1018
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	293, 604
LmnI	GCTCC	5 cut(s)	141, 153, 256, 830, 902
Lsp1109I	GCAGC	5 cut(s)	103, 538, 541, 670, 989
LweI	GCATC	3 cut(s)	711, 807, 1038
MaeI	CTAG	2 cut(s)	297, 852
MaeIII	GTNAC	2 cut(s)	499, 740
MalI	GATC	2 cut(s)	295, 606
MboI	GATC	2 cut(s)	293, 604
MboII	GAAGA	5 cut(s)	37, 196, 199, 778, 974
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	3 cut(s)	138, 835, 923
MlsI	TGGCCA	2 cut(s)	80, 881
MluCI	AATT	2 cut(s)	128, 761
MluNI	TGGCCA	2 cut(s)	80, 881
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	5 cut(s)	163, 178, 271, 808, 880
Mox20I	TGGCCA	2 cut(s)	80, 881
MscI	TGGCCA	2 cut(s)	80, 881
MseI	TTAA	4 cut(s)	209, 429, 641, 804
MslI	CAYNNNNRTG	6 cut(s)	306, 421, 575, 577, 935, 1037
Msp20I	TGGCCA	2 cut(s)	80, 881
MspCI	CTTAAG	1 cut(s)	208
MspI	CCGG	1 cut(s)	1026
MspR9I	CCNGG	4 cut(s)	523, 883, 959, 1036
MvaI	CCWGG	4 cut(s)	523, 883, 959, 1036
MwoI	GCNNNNNNNGC	5 cut(s)	248, 343, 365, 551, 861
NdeII	GATC	2 cut(s)	293, 604
NheI	GCTAGC	1 cut(s)	851
NlaIII	CATG	6 cut(s)	379, 690, 741, 754, 934, 1018
NmeAIII	GCCGAG	1 cut(s)	806
NspI	RCATGY	4 cut(s)	379, 690, 741, 934
OliI	CACNNNNGTG	3 cut(s)	306, 575, 577
PaeI	GCATGC	1 cut(s)	690
PciI	ACATGT	2 cut(s)	737, 930
PfeI	GAWTC	2 cut(s)	11, 473
PflFI	GACNNNGTC	1 cut(s)	616
PfoI	TCCNGGA	2 cut(s)	521, 957
PkrI	GCNGC	6 cut(s)	118, 215, 553, 556, 685, 1004
PleI	GAGTC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	805
PscI	ACATGT	2 cut(s)	737, 930
PsiI	TTATAA	2 cut(s)	666, 1090
Psp124BI	GAGCTC	2 cut(s)	138, 835
Psp6I	CCWGG	4 cut(s)	521, 881, 957, 1034
PspGI	CCWGG	4 cut(s)	521, 881, 957, 1034
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	616
RsaI	GTAC	2 cut(s)	41, 736
RsaNI	GTAC	2 cut(s)	40, 735
RseI	CAYNNNNRTG	6 cut(s)	306, 421, 575, 577, 935, 1037
SacI	GAGCTC	2 cut(s)	138, 835
SaqAI	TTAA	4 cut(s)	209, 429, 641, 804
SatI	GCNGC	6 cut(s)	117, 214, 552, 555, 684, 1003
Sau3AI	GATC	2 cut(s)	293, 604
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	4 cut(s)	523, 883, 959, 1036
SduI	GDGCHC	3 cut(s)	138, 835, 923
SfaNI	GCATC	3 cut(s)	711, 807, 1038
SmiMI	CAYNNNNRTG	6 cut(s)	306, 421, 575, 577, 935, 1037
SmlI	CTYRAG	4 cut(s)	104, 208, 257, 404
SmoI	CTYRAG	4 cut(s)	104, 208, 257, 404
SphI	GCATGC	1 cut(s)	690
Sse9I	AATT	2 cut(s)	128, 761
SsiI	CCGC	4 cut(s)	213, 368, 926, 973
SspMI	CTAG	2 cut(s)	297, 852
SstI	GAGCTC	2 cut(s)	138, 835
StyD4I	CCNGG	4 cut(s)	521, 881, 957, 1034
TaaI	ACNGT	6 cut(s)	18, 44, 354, 616, 734, 809
TaqI	TCGA	3 cut(s)	132, 182, 446
TasI	AATT	2 cut(s)	128, 761
TatI	WGTACW	2 cut(s)	39, 734
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	11, 473
Tru1I	TTAA	4 cut(s)	209, 429, 641, 804
Tru9I	TTAA	4 cut(s)	209, 429, 641, 804
TscAI	CASTG	2 cut(s)	49, 782
TseI	GCWGC	5 cut(s)	116, 551, 554, 683, 1002
TspDTI	ATGAA	2 cut(s)	739, 1062
TspRI	CASTG	2 cut(s)	49, 782
Tth111I	GACNNNGTC	1 cut(s)	616
Vha464I	CTTAAG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	296
XceI	RCATGY	4 cut(s)	379, 690, 741, 934
XspI	CTAG	2 cut(s)	297, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.