Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Forward (+)

71290897 .. 71295249

Gene Structure 4353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG492300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTGCAGGACTAGAATGATAGTTGGTGTTGGATCTAGAAACATCTCTGGCAGTTTCTTAGAGGTCATTGAGAAGCAGGGTTGGCAAGGGCTGTGGGCAGGAAATGCAGTCAATATGATCCGCATAGTCCCCACCCAGGCAGTTGAGTTTGGGACGTTTGAGTTTGTTAAACGAGCAATGACATCGGCACAAGAGAAGTGGAAGCAGACTGAAGGCCCAAAGGTGCAAATTGGCCCTGTAAGCTTGGACTTCTCTATCTCCTGGATTTCTCCTGTTGCTGTGGCTGGTGCTGCTGCTGGAATTGCTAGCACACTTGTGTGTCATCCCCTTGAAGTTTTGAAGGATCGGTTGACTGTCTGTCCTGAGGCATATCCTAGTATAGGTGTAGCAATCTGTAAGATTTATAAGGAAGGTGGTATTGCTTCATGCTATTCGGGTCTTTCACCTACACTGATTGGGATGCTTCCCTACAGTACATGCTATTATTTCATGTACGAGAAAATCAAGAAATCCTACTGCCTAACAAAGAAAAAAGAATCTCTAAGCCGTCCAGAGATGTTACTGGTCGGAGCTCTGGCAGGTTTTACAGCTAGCACAATCAGCTTTCCATTGGAGGTGGCCAGGAAACGGCTGATGGTTGGAGCTATGCAGGGTAAGTGCCCGCCCCATATGGCAGCTGCACTTTCAGAAGTGATACGGGAGGAAGGTTTATTGGGACTCTACAGAGGGTGGGGTGCAAGCTGTTTAAAGGTCATGCCTTCATCTGGCATCACCTGGATGTTTTATGAAGCTTGGAAAGACATATTGCTCGTTCAGAGACATCATCCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

277

Amino Acids

30.38

Weight (kDa)

9.17

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	3 - 61	2.5e-10	Mitochondrial carrier protein
Mito_carr	PF00153	93 - 172	3.1e-18	Mitochondrial carrier protein
Mito_carr	PF00153	184 - 270	2e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	405, 832
Acc36I	ACCTGC	1 cut(s)	569
AciI	CCGC	2 cut(s)	121, 662
AclWI	GGATC	3 cut(s)	40, 112, 351
AcoI	YGGCCR	1 cut(s)	618
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	2 cut(s)	475, 494
AfiI	CCNNNNNNNGG	4 cut(s)	136, 380, 627, 764
AgsI	TTSAA	2 cut(s)	332, 340
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	4 cut(s)	135, 260, 620, 773
AleI	CACNNNNGTG	2 cut(s)	314, 316
AluBI	AGCT	8 cut(s)	243, 572, 590, 603, 644, 677, 741, 791
AluI	AGCT	8 cut(s)	243, 572, 590, 603, 644, 677, 741, 791
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	1 cut(s)	811
AlwI	GGATC	3 cut(s)	40, 112, 351
AoxI	GGCC	3 cut(s)	214, 232, 618
ApeKI	GCWGC	4 cut(s)	290, 293, 674, 677
AspS9I	GGNCC	2 cut(s)	215, 233
AsuHPI	GGTGA	2 cut(s)	435, 763
AsuNHI	GCTAGC	2 cut(s)	305, 590
AxyI	CCTNAGG	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	662
BalI	TGGCCA	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	574
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	4 cut(s)	277, 280, 664, 686
BccI	CCATC	1 cut(s)	628
BceAI	ACGGC	2 cut(s)	531, 644
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BciT130I	CCWGG	4 cut(s)	137, 262, 622, 775
BcoDI	GTCTC	1 cut(s)	811
BfaI	CTAG	5 cut(s)	12, 36, 306, 375, 591
BfmI	CTRYAG	2 cut(s)	469, 721
BfuAI	ACCTGC	1 cut(s)	569
BisI	GCNGC	4 cut(s)	291, 294, 675, 678
BlsI	GCNGC	4 cut(s)	292, 295, 676, 679
Bme1390I	CCNGG	4 cut(s)	137, 262, 622, 775
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	215, 233
BmrFI	CCNGG	4 cut(s)	137, 262, 622, 775
BmsI	GCATC	2 cut(s)	450, 777
BmtI	GCTAGC	2 cut(s)	309, 594
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 380, 627, 764
Bse1I	ACTGG	1 cut(s)	567
Bse21I	CCTNAGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	4 cut(s)	137, 262, 622, 775
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	4 cut(s)	322, 465, 783, 823
BseLI	CCNNNNNNNGG	4 cut(s)	136, 380, 627, 764
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	567
BseSI	GKGCMC	1 cut(s)	662
BseXI	GCAGC	4 cut(s)	277, 280, 664, 686
BsgI	GTGCAG	2 cut(s)	25, 663
BshFI	GGCC	3 cut(s)	216, 234, 620
BsiHKAI	GWGCWC	1 cut(s)	574
BslFI	GGGAC	3 cut(s)	113, 166, 729
BslI	CCNNNNNNNGG	4 cut(s)	136, 380, 627, 764
BsmAI	GTCTC	1 cut(s)	811
BsmFI	GGGAC	3 cut(s)	113, 166, 729
BsnI	GGCC	3 cut(s)	216, 234, 620
Bsp1286I	GDGCHC	2 cut(s)	574, 662
Bsp143I	GATC	3 cut(s)	32, 117, 343
BspACI	CCGC	2 cut(s)	121, 662
BspANI	GGCC	3 cut(s)	216, 234, 620
BspCNI	CTCAG	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	569
BspOI	GCTAGC	2 cut(s)	309, 594
BspPI	GGATC	3 cut(s)	40, 112, 351
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	3 cut(s)	32, 117, 343
Bst2UI	CCWGG	4 cut(s)	137, 262, 622, 775
Bst4CI	ACNGT	2 cut(s)	355, 473
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	4 cut(s)	307, 592, 662, 739
BstDEI	CTNAG	3 cut(s)	58, 363, 542
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	4 cut(s)	322, 465, 783, 823
BstKTI	GATC	3 cut(s)	35, 120, 346
BstMAI	GTCTC	1 cut(s)	811
BstMBI	GATC	3 cut(s)	32, 117, 343
BstMWI	GCNNNNNNNGC	6 cut(s)	82, 104, 240, 290, 302, 600
BstNI	CCWGG	4 cut(s)	137, 262, 622, 775
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	4 cut(s)	135, 260, 620, 773
BstSFI	CTRYAG	2 cut(s)	469, 721
BstSLI	GKGCMC	1 cut(s)	662
BstV1I	GCAGC	4 cut(s)	277, 280, 664, 686
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	216, 234, 620
BtsCI	GGATG	4 cut(s)	322, 465, 783, 823
BtsIMutI	CAGTG	1 cut(s)	449
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	4 cut(s)	307, 592, 662, 739
Cfr13I	GGNCC	2 cut(s)	215, 233
Csp6I	GTAC	2 cut(s)	474, 493
CspCI	CAANNNNNGTGG	4 cut(s)	74, 109, 179, 214
CviAII	CATG	4 cut(s)	426, 477, 490, 754
CviQI	GTAC	2 cut(s)	474, 493
DdeI	CTNAG	3 cut(s)	58, 363, 542
DpnI	GATC	3 cut(s)	34, 119, 345
DpnII	GATC	3 cut(s)	32, 117, 343
DraI	TTTAAA	1 cut(s)	747
DriI	GACNNNNNGTC	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	618
Eam1105I	GACNNNNNGTC	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	572
Eco24I	GRGCYC	1 cut(s)	574
Eco53kI	GAGCTC	1 cut(s)	572
Eco57I	CTGAAG	1 cut(s)	231
Eco81I	CCTNAGG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	572
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoRII	CCWGG	4 cut(s)	135, 260, 620, 773
EcoT38I	GRGCYC	1 cut(s)	574
FaeI	CATG	4 cut(s)	429, 480, 493, 757
FaqI	GGGAC	3 cut(s)	113, 166, 729
FatI	CATG	4 cut(s)	425, 476, 489, 753
FauI	CCCGC	1 cut(s)	669
FauNDI	CATATG	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	291, 294, 675, 678
FokI	GGATG	4 cut(s)	309, 472, 790, 810
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	4 cut(s)	291, 294, 675, 678
FspBI	CTAG	5 cut(s)	12, 36, 306, 375, 591
GluI	GCNGC	4 cut(s)	291, 294, 675, 678
HaeIII	GGCC	3 cut(s)	216, 234, 620
Hin1II	CATG	4 cut(s)	429, 480, 493, 757
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HindIII	AAGCTT	2 cut(s)	241, 789
HinfI	GANTC	2 cut(s)	536, 717
HphI	GGTGA	2 cut(s)	435, 763
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	3 cut(s)	569, 688, 816
Hpy188III	TCNNGA	4 cut(s)	36, 362, 505, 551
Hpy8I	GTNNAC	1 cut(s)	351
HpyAV	CCTTC	5 cut(s)	206, 334, 404, 698, 768
HpyCH4III	ACNGT	2 cut(s)	355, 473
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	6 cut(s)	6, 107, 226, 649, 680, 737
HpyF10VI	GCNNNNNNNGC	6 cut(s)	82, 104, 240, 290, 302, 600
HpyF3I	CTNAG	3 cut(s)	58, 363, 542
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	429, 480, 493, 757
Kzo9I	GATC	3 cut(s)	32, 117, 343
LmnI	GCTCC	2 cut(s)	569, 641
Lsp1109I	GCAGC	4 cut(s)	277, 280, 664, 686
LweI	GCATC	2 cut(s)	450, 777
MaeI	CTAG	5 cut(s)	12, 36, 306, 375, 591
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	558
MalI	GATC	3 cut(s)	34, 119, 345
MboI	GATC	3 cut(s)	32, 117, 343
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	574, 662
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	2 cut(s)	228, 300
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	711
MmeI	TCCRAC	3 cut(s)	10, 547, 619
MnlI	CCTC	5 cut(s)	55, 358, 607, 694, 719
Mox20I	TGGCCA	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	2 cut(s)	168, 746
MslI	CAYNNNNRTG	3 cut(s)	314, 316, 776
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	677
MspR9I	CCNGG	4 cut(s)	137, 262, 622, 775
MvaI	CCWGG	4 cut(s)	137, 262, 622, 775
MwoI	GCNNNNNNNGC	6 cut(s)	82, 104, 240, 290, 302, 600
NdeI	CATATG	1 cut(s)	669
NdeII	GATC	3 cut(s)	32, 117, 343
NheI	GCTAGC	2 cut(s)	305, 590
NlaIII	CATG	4 cut(s)	429, 480, 493, 757
NspI	RCATGY	1 cut(s)	480
OliI	CACNNNNGTG	2 cut(s)	314, 316
PfeI	GAWTC	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	292, 295, 676, 679
PleI	GAGTC	1 cut(s)	711
PpsI	GAGTC	1 cut(s)	711
PsiI	TTATAA	2 cut(s)	405, 832
Psp124BI	GAGCTC	1 cut(s)	574
Psp6I	CCWGG	4 cut(s)	135, 260, 620, 773
PspGI	CCWGG	4 cut(s)	135, 260, 620, 773
PspPI	GGNCC	2 cut(s)	215, 233
PsuI	RGATCY	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	2 cut(s)	475, 494
RsaNI	GTAC	2 cut(s)	474, 493
RseI	CAYNNNNRTG	3 cut(s)	314, 316, 776
SacI	GAGCTC	1 cut(s)	574
SaqAI	TTAA	2 cut(s)	168, 746
SatI	GCNGC	4 cut(s)	291, 294, 675, 678
Sau3AI	GATC	3 cut(s)	32, 117, 343
Sau96I	GGNCC	2 cut(s)	215, 233
SchI	GAGTC	1 cut(s)	711
ScrFI	CCNGG	4 cut(s)	137, 262, 622, 775
SduI	GDGCHC	2 cut(s)	574, 662
SfaNI	GCATC	2 cut(s)	450, 777
SfcI	CTRYAG	2 cut(s)	469, 721
SmiMI	CAYNNNNRTG	3 cut(s)	314, 316, 776
Sse9I	AATT	2 cut(s)	228, 300
SsiI	CCGC	2 cut(s)	121, 662
SspMI	CTAG	5 cut(s)	12, 36, 306, 375, 591
SstI	GAGCTC	1 cut(s)	574
StyD4I	CCNGG	4 cut(s)	135, 260, 620, 773
TaaI	ACNGT	2 cut(s)	355, 473
TaiI	ACGT	1 cut(s)	158
TasI	AATT	2 cut(s)	228, 300
TatI	WGTACW	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	168, 746
Tru9I	TTAA	2 cut(s)	168, 746
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	4 cut(s)	290, 293, 674, 677
TspDTI	ATGAA	4 cut(s)	414, 478, 750, 801
TspRI	CASTG	1 cut(s)	456
XagI	CCTNNNNNAGG	1 cut(s)	378
XbaI	TCTAGA	1 cut(s)	35
XceI	RCATGY	1 cut(s)	480
XspI	CTAG	5 cut(s)	12, 36, 306, 375, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.