Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Forward (+)

64519246 .. 64522959

Gene Structure 3714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCCCCAAAACCCCACTCCCTCTCCCTCTCTCAGTCTATGAAGAAGGAGAAGAAGTACAGTGGGGTTTTTGGGGACATGTACACTAGTGTGGCCATTATTCCCAAAGACCTTGAGCTTGATAAGGAGGCCCACCCATCACCCTTTGAGCTCCACTTCCAATTCCCTGACCTCTCCCAACCCATCAGAGGATTCTTGAGGACAAGAGAAGTTGGAGAGTTCCTTAGTGGGGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGACTAGAATGATAGTTGGTGTTGGATCTAGAAACATCTCTGGCAGTTTTTTAGAGGTCATTGAGAAGCAGGGTTGGCAAGGGCTGTGGGCAGGAAATGCAGTCAATATGATCCGTATAGTCCCCACCCAGGCAGTTGAGTTTGGAACGTTTGAGTTCGTTAAACGAGCAATGACGTCAGCACAAGAGAAGTGGAAGCAGACTGAAGGCCCAAAGGTGCAAATTGGCCCTGTAAGCTTGGACTTCTCTATCTCCTGGATTTCTCCTGTTGCTGTGGCTGGTGCTGCTGCTGGAATTGCTAGCACACTTGTGTGTCATCCCCTTGAAGTTTTGAAGGATCGGTTGACTGTCTGTCCTGAGGCATATCCTAGTATAGGTGTAGCAATCTGTAAGATTTATAAGGAAGGTGGTATTGCTTCATGCTATTCGGGTCTTTCACCTACACTGATTGGGATGCTTCCCTACAGTACATGCTATTATTTCATGTACGAGAAAATCAAGAAATCCTACTGCCTAACAAAGAAAAAAGAGTCTCTAAGCCGTCCAGAGATGTTACTGGTTGGAGCTCTGGCAGGTTTTACAGCCAGCACAATCAGCTTTCCATTGGAGGTGGCCAGGAAACGGCTGATGGTTGGAGCTATGCAGGGTAAGTGCCCGCCCCATATGGCAGCTGCACTTTCAGAAGTGATACGGGAGGAAGGTTTATTGGGACTCTACAGAGGGTGGGGTGCAAGCTGTTTAAAGGTCATGCCTTCATCTGGCATCACCTGGATGTTTTATGAAGCTTGGAAAGACATATTGCTCGTTCAGAGACATCATCCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

370

Amino Acids

40.52

Weight (kDa)

9.12

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	72 - 153	9e-20	Mitochondrial carrier protein
Mito_carr	PF00153	185 - 264	5.2e-18	Mitochondrial carrier protein
Mito_carr	PF00153	276 - 362	3.4e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	681, 1108
AatII	GACGTC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	845
AciI	CCGC	1 cut(s)	938
AclI	AACGTT	1 cut(s)	431
AclWI	GGATC	3 cut(s)	316, 388, 627
AcoI	YGGCCR	2 cut(s)	93, 894
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	458
AfaI	GTAC	4 cut(s)	59, 83, 751, 770
AfiI	CCNNNNNNNGG	6 cut(s)	188, 229, 412, 656, 903, 1040
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	608, 616
AhdI	GACNNNNNGTC	1 cut(s)	633
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	4 cut(s)	411, 536, 896, 1049
AleI	CACNNNNGTG	3 cut(s)	89, 590, 592
Alw21I	GWGCWC	2 cut(s)	153, 850
Alw26I	GTCTC	3 cut(s)	269, 819, 1087
AlwI	GGATC	3 cut(s)	316, 388, 627
AoxI	GGCC	5 cut(s)	93, 129, 490, 508, 894
ApeKI	GCWGC	4 cut(s)	566, 569, 950, 953
AspS9I	GGNCC	3 cut(s)	130, 491, 509
AsuHPI	GGTGA	3 cut(s)	132, 711, 1039
AsuNHI	GCTAGC	1 cut(s)	581
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	1 cut(s)	938
BalI	TGGCCA	2 cut(s)	95, 896
BanII	GRGCYC	2 cut(s)	153, 850
Bbv12I	GWGCWC	2 cut(s)	153, 850
BbvI	GCAGC	4 cut(s)	553, 556, 940, 962
BccI	CCATC	4 cut(s)	145, 191, 287, 904
BceAI	ACGGC	2 cut(s)	807, 920
BciT130I	CCWGG	4 cut(s)	413, 538, 898, 1051
BcoDI	GTCTC	3 cut(s)	269, 819, 1087
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	5 cut(s)	87, 288, 312, 582, 651
BfmI	CTRYAG	2 cut(s)	745, 997
BfuAI	ACCTGC	1 cut(s)	845
BisI	GCNGC	4 cut(s)	567, 570, 951, 954
BlsI	GCNGC	4 cut(s)	568, 571, 952, 955
Bme1390I	CCNGG	4 cut(s)	413, 538, 898, 1051
BmeRI	GACNNNNNGTC	1 cut(s)	633
BmgT120I	GGNCC	3 cut(s)	130, 491, 509
BmrFI	CCNGG	4 cut(s)	413, 538, 898, 1051
BmsI	GCATC	2 cut(s)	726, 1053
BmtI	GCTAGC	1 cut(s)	585
BpuEI	CTTGAG	3 cut(s)	134, 217, 293
BsaHI	GRCGYC	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 41, 71
Bsc4I	CCNNNNNNNGG	6 cut(s)	188, 229, 412, 656, 903, 1040
Bse1I	ACTGG	1 cut(s)	843
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	2 cut(s)	252, 459
BseBI	CCWGG	4 cut(s)	413, 538, 898, 1051
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	4 cut(s)	598, 741, 1059, 1099
BseLI	CCNNNNNNNGG	6 cut(s)	188, 229, 412, 656, 903, 1040
BseMI	GCAATG	2 cut(s)	252, 459
BseMII	CTCAG	2 cut(s)	47, 630
BseNI	ACTGG	1 cut(s)	843
BseRI	GAGGAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	938
BseXI	GCAGC	4 cut(s)	553, 556, 940, 962
BsgI	GTGCAG	1 cut(s)	939
BshFI	GGCC	5 cut(s)	95, 131, 492, 510, 896
BsiHKAI	GWGCWC	2 cut(s)	153, 850
BslFI	GGGAC	3 cut(s)	89, 389, 1005
BslI	CCNNNNNNNGG	6 cut(s)	188, 229, 412, 656, 903, 1040
BsmAI	GTCTC	3 cut(s)	269, 819, 1087
BsmFI	GGGAC	3 cut(s)	89, 389, 1005
BsnI	GGCC	5 cut(s)	95, 131, 492, 510, 896
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	3 cut(s)	153, 850, 938
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	308, 393, 619
BspACI	CCGC	1 cut(s)	938
BspANI	GGCC	5 cut(s)	95, 131, 492, 510, 896
BspCNI	CTCAG	2 cut(s)	46, 631
BspMI	ACCTGC	1 cut(s)	845
BspOI	GCTAGC	1 cut(s)	585
BspPI	GGATC	3 cut(s)	316, 388, 627
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	2 cut(s)	252, 459
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	843
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	3 cut(s)	308, 393, 619
BssNI	GRCGYC	1 cut(s)	458
Bst2UI	CCWGG	4 cut(s)	413, 538, 898, 1051
Bst4CI	ACNGT	3 cut(s)	62, 631, 749
BstACI	GRCGYC	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	4 cut(s)	583, 868, 938, 1015
BstDEI	CTNAG	4 cut(s)	33, 224, 639, 818
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstF5I	GGATG	4 cut(s)	598, 741, 1059, 1099
BstKTI	GATC	3 cut(s)	311, 396, 622
BstMAI	GTCTC	3 cut(s)	269, 819, 1087
BstMBI	GATC	3 cut(s)	308, 393, 619
BstMWI	GCNNNNNNNGC	7 cut(s)	263, 358, 380, 516, 566, 578, 876
BstNI	CCWGG	4 cut(s)	413, 538, 898, 1051
BstNSI	RCATGY	2 cut(s)	82, 756
BstSCI	CCNGG	4 cut(s)	411, 536, 896, 1049
BstSFI	CTRYAG	2 cut(s)	745, 997
BstSLI	GKGCMC	1 cut(s)	938
BstV1I	GCAGC	4 cut(s)	553, 556, 940, 962
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	5 cut(s)	95, 131, 492, 510, 896
BtsCI	GGATG	4 cut(s)	598, 741, 1059, 1099
BtsIMutI	CAGTG	2 cut(s)	67, 725
BveI	ACCTGC	1 cut(s)	845
Cac8I	GCNNGC	4 cut(s)	583, 868, 938, 1015
Cfr13I	GGNCC	3 cut(s)	130, 491, 509
Csp6I	GTAC	4 cut(s)	58, 82, 750, 769
CspCI	CAANNNNNGTGG	4 cut(s)	350, 385, 455, 490
CviAII	CATG	5 cut(s)	79, 702, 753, 766, 1030
CviQI	GTAC	4 cut(s)	58, 82, 750, 769
DdeI	CTNAG	4 cut(s)	33, 224, 639, 818
DpnI	GATC	3 cut(s)	310, 395, 621
DpnII	GATC	3 cut(s)	308, 393, 619
DraI	TTTAAA	1 cut(s)	1023
DriI	GACNNNNNGTC	1 cut(s)	633
EaeI	YGGCCR	2 cut(s)	93, 894
Eam1105I	GACNNNNNGTC	1 cut(s)	633
Ecl136II	GAGCTC	2 cut(s)	151, 848
Eco24I	GRGCYC	2 cut(s)	153, 850
Eco31I	GGTCTC	1 cut(s)	269
Eco53kI	GAGCTC	2 cut(s)	151, 848
Eco57I	CTGAAG	1 cut(s)	507
Eco81I	CCTNAGG	1 cut(s)	639
EcoICRI	GAGCTC	2 cut(s)	151, 848
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoRII	CCWGG	4 cut(s)	411, 536, 896, 1049
EcoT38I	GRGCYC	2 cut(s)	153, 850
FaeI	CATG	5 cut(s)	82, 705, 756, 769, 1033
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	3 cut(s)	89, 389, 1005
FatI	CATG	5 cut(s)	78, 701, 752, 765, 1029
FauI	CCCGC	1 cut(s)	945
FauNDI	CATATG	1 cut(s)	945
Fnu4HI	GCNGC	4 cut(s)	567, 570, 951, 954
FokI	GGATG	4 cut(s)	585, 748, 1066, 1086
FriOI	GRGCYC	2 cut(s)	153, 850
Fsp4HI	GCNGC	4 cut(s)	567, 570, 951, 954
FspBI	CTAG	5 cut(s)	87, 288, 312, 582, 651
GluI	GCNGC	4 cut(s)	567, 570, 951, 954
HaeIII	GGCC	5 cut(s)	95, 131, 492, 510, 896
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	5 cut(s)	82, 705, 756, 769, 1033
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HindIII	AAGCTT	2 cut(s)	517, 1065
HinfI	GANTC	3 cut(s)	192, 812, 993
HphI	GGTGA	3 cut(s)	132, 711, 1039
Hpy166II	GTNNAC	2 cut(s)	84, 627
Hpy188I	TCNGA	3 cut(s)	188, 964, 1092
Hpy188III	TCNNGA	7 cut(s)	196, 272, 283, 312, 638, 781, 827
Hpy8I	GTNNAC	2 cut(s)	84, 627
HpyAV	CCTTC	6 cut(s)	40, 482, 610, 680, 974, 1044
HpyCH4III	ACNGT	3 cut(s)	62, 631, 749
HpyCH4IV	ACGT	2 cut(s)	431, 458
HpyCH4V	TGCA	5 cut(s)	383, 502, 925, 956, 1013
HpyF10VI	GCNNNNNNNGC	7 cut(s)	263, 358, 380, 516, 566, 578, 876
HpyF3I	CTNAG	4 cut(s)	33, 224, 639, 818
HpySE526I	ACGT	2 cut(s)	431, 458
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	5 cut(s)	82, 705, 756, 769, 1033
Kzo9I	GATC	3 cut(s)	308, 393, 619
LmnI	GCTCC	4 cut(s)	156, 271, 845, 917
Lsp1109I	GCAGC	4 cut(s)	553, 556, 940, 962
LweI	GCATC	2 cut(s)	726, 1053
MaeI	CTAG	5 cut(s)	87, 288, 312, 582, 651
MaeII	ACGT	2 cut(s)	431, 458
MaeIII	GTNAC	1 cut(s)	834
MalI	GATC	3 cut(s)	310, 395, 621
MboI	GATC	3 cut(s)	308, 393, 619
MboII	GAAGA	2 cut(s)	55, 64
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	3 cut(s)	153, 850, 938
MlsI	TGGCCA	2 cut(s)	95, 896
MluCI	AATT	3 cut(s)	161, 504, 576
MluNI	TGGCCA	2 cut(s)	95, 896
MlyI	GAGTC	2 cut(s)	821, 987
MmeI	TCCRAC	4 cut(s)	193, 286, 823, 895
Mox20I	TGGCCA	2 cut(s)	95, 896
MscI	TGGCCA	2 cut(s)	95, 896
MseI	TTAA	2 cut(s)	444, 1022
MslI	CAYNNNNRTG	4 cut(s)	89, 590, 592, 1052
Msp20I	TGGCCA	2 cut(s)	95, 896
MspA1I	CMGCKG	1 cut(s)	953
MspR9I	CCNGG	4 cut(s)	413, 538, 898, 1051
MvaI	CCWGG	4 cut(s)	413, 538, 898, 1051
MwoI	GCNNNNNNNGC	7 cut(s)	263, 358, 380, 516, 566, 578, 876
NdeI	CATATG	1 cut(s)	945
NdeII	GATC	3 cut(s)	308, 393, 619
NheI	GCTAGC	1 cut(s)	581
NlaIII	CATG	5 cut(s)	82, 705, 756, 769, 1033
NspI	RCATGY	2 cut(s)	82, 756
OliI	CACNNNNGTG	3 cut(s)	89, 590, 592
PciI	ACATGT	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	192
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	4 cut(s)	568, 571, 952, 955
PleI	GAGTC	2 cut(s)	820, 987
PpsI	GAGTC	2 cut(s)	820, 987
PscI	ACATGT	1 cut(s)	78
PsiI	TTATAA	2 cut(s)	681, 1108
Psp124BI	GAGCTC	2 cut(s)	153, 850
Psp1406I	AACGTT	1 cut(s)	431
Psp6I	CCWGG	4 cut(s)	411, 536, 896, 1049
PspGI	CCWGG	4 cut(s)	411, 536, 896, 1049
PspPI	GGNCC	3 cut(s)	130, 491, 509
PsuI	RGATCY	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	4 cut(s)	59, 83, 751, 770
RsaNI	GTAC	4 cut(s)	58, 82, 750, 769
RseI	CAYNNNNRTG	4 cut(s)	89, 590, 592, 1052
SacI	GAGCTC	2 cut(s)	153, 850
SaqAI	TTAA	2 cut(s)	444, 1022
SatI	GCNGC	4 cut(s)	567, 570, 951, 954
Sau3AI	GATC	3 cut(s)	308, 393, 619
Sau96I	GGNCC	3 cut(s)	130, 491, 509
SchI	GAGTC	2 cut(s)	821, 987
ScrFI	CCNGG	4 cut(s)	413, 538, 898, 1051
SduI	GDGCHC	3 cut(s)	153, 850, 938
SfaNI	GCATC	2 cut(s)	726, 1053
SfcI	CTRYAG	2 cut(s)	745, 997
SmiMI	CAYNNNNRTG	4 cut(s)	89, 590, 592, 1052
SmlI	CTYRAG	3 cut(s)	113, 196, 272
SmoI	CTYRAG	3 cut(s)	113, 196, 272
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	3 cut(s)	161, 504, 576
SsiI	CCGC	1 cut(s)	938
SspMI	CTAG	5 cut(s)	87, 288, 312, 582, 651
SstI	GAGCTC	2 cut(s)	153, 850
StyD4I	CCNGG	4 cut(s)	411, 536, 896, 1049
TaaI	ACNGT	3 cut(s)	62, 631, 749
TaiI	ACGT	2 cut(s)	434, 461
TasI	AATT	3 cut(s)	161, 504, 576
TatI	WGTACW	3 cut(s)	57, 81, 749
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	444, 1022
Tru9I	TTAA	2 cut(s)	444, 1022
TscAI	CASTG	2 cut(s)	67, 732
TseI	GCWGC	4 cut(s)	566, 569, 950, 953
TspDTI	ATGAA	5 cut(s)	56, 690, 754, 1026, 1077
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	2 cut(s)	67, 732
XagI	CCTNNNNNAGG	1 cut(s)	654
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	2 cut(s)	82, 756
XspI	CTAG	5 cut(s)	87, 288, 312, 582, 651
ZraI	GACGTC	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.