Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Forward (+)

13510273 .. 13512487

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g15470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCCCCAAAACCCCACTCCCTCTCCCTCTCTCAGTCTCTGAAGAAGGAGAAGAAGTACAGTGGTGGTGGGGTTTTGGGGGATGTGTACAGTATGGCCATACTTCCCAAAAAGCTTGAGCTTGAGAAGGAGGCTGCCCACCCGAAATTTGAGCTCCGATTTCAGCTCCCTAACCTCTCCCAGCCCCTCAGAGATTTCTCGAAGACGAGAGAAGTTAGAGAGTTCTTAAGCGGCGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGAACCAGAATGGTAGTTGGTGTCGGATCTAGACACATTTGTGGTAGTTTCTTAGAGGTCATTGAGAAGCAAGGGTGGCAAGGACTGTGGGCTGGAAATGCAGTCAACATGCTTCGCATAATCCCCACACAAGCTGTTGAGTTTGGAACATTTGAGTGCATTAAACGAGCAATGACATCGACACAAGAAAAGTGGAAGCAGGGTGAATCCCCAAAGGTGCAGATTGGTCCTGTAACCTTGAACTTCTCTATCTCCTGGATTTCCCCTGTCGCTGTGGCTGGTGCTGCTGCCGGAGTTGTTAGCACACTTGTGTGTCATCCCCTTGAAGTTCTAAAGGATCGAGCTGACCGTGTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

215

Amino Acids

23.4

Weight (kDa)

9.61

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	2 cut(s)	319, 630
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	59, 89
AflII	CTTAAG	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	526, 611
AjnI	CCWGG	1 cut(s)	539
AleI	CACNNNNGTG	3 cut(s)	324, 593, 595
AluBI	AGCT	7 cut(s)	115, 121, 154, 166, 260, 419, 629
AluI	AGCT	7 cut(s)	115, 121, 154, 166, 260, 419, 629
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	42, 272
AlwI	GGATC	2 cut(s)	319, 630
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	3 cut(s)	134, 569, 572
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	512
BalI	TGGCCA	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	121, 556, 559
BccI	CCATC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	42, 272
BfaI	CTAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	237
BfrI	CTTAAG	1 cut(s)	226
BisI	GCNGC	4 cut(s)	135, 232, 570, 573
BlsI	GCNGC	4 cut(s)	136, 233, 571, 574
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	209
BpuEI	CTTGAG	3 cut(s)	137, 143, 296
BsaI	GGTCTC	1 cut(s)	272
BsaXI	ACNNNNNCTCC	5 cut(s)	8, 38, 41, 71, 623
Bse3DI	GCAATG	2 cut(s)	255, 462
BseBI	CCWGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	88, 601
BseMI	GCAATG	2 cut(s)	255, 462
BseMII	CTCAG	2 cut(s)	47, 202
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	121, 556, 559
BseYI	CCCAGC	1 cut(s)	180
BsgI	GTGCAG	1 cut(s)	524
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	576
BsmAI	GTCTC	2 cut(s)	42, 272
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	311, 622
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	46, 201
BspPI	GGATC	2 cut(s)	319, 630
BspTI	CTTAAG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	255, 462
BsrGI	TGTACA	1 cut(s)	87
BssMI	GATC	2 cut(s)	311, 622
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	4 cut(s)	62, 92, 372, 635
BstAFI	CTTAAG	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	87
BstDEI	CTNAG	3 cut(s)	33, 188, 337
BstF5I	GGATG	2 cut(s)	88, 601
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	2 cut(s)	314, 625
BstMAI	GTCTC	2 cut(s)	42, 272
BstMBI	GATC	2 cut(s)	311, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 361, 383, 569
BstNI	CCWGG	1 cut(s)	541
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	539
BstV1I	GCAGC	3 cut(s)	121, 556, 559
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	88, 601
BtsIMutI	CAGTG	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	40
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	58, 88
CspCI	CAANNNNNGTGG	4 cut(s)	353, 388, 458, 493
CviAII	CATG	1 cut(s)	394
CviQI	GTAC	2 cut(s)	58, 88
DdeI	CTNAG	3 cut(s)	33, 188, 337
DpnI	GATC	2 cut(s)	313, 624
DpnII	GATC	2 cut(s)	311, 622
EaeI	YGGCCR	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	512
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	539
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	1 cut(s)	397
FaiI	YATR	4 cut(s)	95, 101, 395, 404
FalI	AAGNNNNNCTT	4 cut(s)	220, 252, 249, 281
FatI	CATG	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	135, 232, 570, 573
FokI	GGATG	2 cut(s)	95, 588
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	4 cut(s)	135, 232, 570, 573
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	4 cut(s)	135, 232, 570, 573
GsaI	CCCAGC	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	576
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	1 cut(s)	491
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	88, 391
Hpy188I	TCNGA	5 cut(s)	42, 158, 191, 287, 311
Hpy188III	TCNNGA	4 cut(s)	199, 275, 315, 642
Hpy8I	GTNNAC	2 cut(s)	88, 391
HpyAV	CCTTC	2 cut(s)	40, 121
HpyCH4III	ACNGT	4 cut(s)	62, 92, 372, 635
HpyCH4V	TGCA	3 cut(s)	386, 444, 505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 361, 383, 569
HpyF3I	CTNAG	3 cut(s)	33, 188, 337
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	311, 622
LmnI	GCTCC	3 cut(s)	159, 171, 274
Lsp1109I	GCAGC	3 cut(s)	121, 556, 559
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	2 cut(s)	313, 624
MboI	GATC	2 cut(s)	311, 622
MboII	GAAGA	3 cut(s)	55, 64, 214
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	32, 38, 124, 185, 197, 282, 334
Mox20I	TGGCCA	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	2 cut(s)	227, 447
MslI	CAYNNNNRTG	4 cut(s)	324, 439, 593, 595
Msp20I	TGGCCA	1 cut(s)	98
MspCI	CTTAAG	1 cut(s)	226
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	4 cut(s)	266, 361, 383, 569
NdeII	GATC	2 cut(s)	311, 622
NlaIII	CATG	1 cut(s)	397
NspI	RCATGY	1 cut(s)	397
OliI	CACNNNNGTG	3 cut(s)	324, 593, 595
PcsI	WCGNNNNNNNCGW	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	491
PflFI	GACNNNGTC	1 cut(s)	635
PfoI	TCCNGGA	1 cut(s)	539
PkrI	GCNGC	4 cut(s)	136, 233, 571, 574
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	539
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	539
PspPI	GGNCC	1 cut(s)	512
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	311
PsyI	GACNNNGTC	1 cut(s)	635
RsaI	GTAC	2 cut(s)	59, 89
RsaNI	GTAC	2 cut(s)	58, 88
RseI	CAYNNNNRTG	4 cut(s)	324, 439, 593, 595
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	227, 447
SatI	GCNGC	4 cut(s)	135, 232, 570, 573
Sau3AI	GATC	2 cut(s)	311, 622
Sau96I	GGNCC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	1 cut(s)	156
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	4 cut(s)	324, 439, 593, 595
SmlI	CTYRAG	4 cut(s)	116, 122, 226, 275
SmoI	CTYRAG	4 cut(s)	116, 122, 226, 275
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	539
TaaI	ACNGT	4 cut(s)	62, 92, 372, 635
TaqI	TCGA	3 cut(s)	200, 464, 625
TasI	AATT	1 cut(s)	146
TatI	WGTACW	2 cut(s)	57, 87
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	227, 447
Tru9I	TTAA	2 cut(s)	227, 447
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	3 cut(s)	134, 569, 572
TspRI	CASTG	1 cut(s)	67
Tth111I	GACNNNGTC	1 cut(s)	635
Vha464I	CTTAAG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	1 cut(s)	397
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.