Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000873.1

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Forward (+)

22872 .. 26327

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000873.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgaagaaggagaagaagtacagtggggtttttggggacatgtacaccagtgtggccattattcccaaagaccttgagcttgacaaggaggccgcccacccatccccctttgagctccacttccaattccctgacctctcccaacccatcagaggattcttgaggacaagagaagttggtgagttccttagtggggctttagcaggggcaatgaccaaagctgttcttgctcctcttgagaccatcaggactagaatgatagttggtgttggatctagaaacatctctggcagtttcttagaggtcattgagaagcagggttggcaagggctgtgggcaggaaatgcagtcaatatgatccgcatagtccccacccaggcagttgagtttgggacgtttgagtttgttaaacgagcaatgacatcggcacaagagaagtggaagcagactgaaggcccaaaggtgcaaattggccctgtaagcttggacttctctatatcctggatttctcctgttgctgtggctggtgctgctgctggaattgctagcacacttgtgtgtcatccccttgaagttttgaaggatcggttgactgtctgtcctgaggcatatcctagtataggtgtagcaatctgtaagatttataaggaaggtggtattgcttcatgctattcgggtctttcacctacactgattgggatgcttccctacagtacatgctattatttcatgtacgagaaaatcaagaaatcctactgcctaacaaagaaaaaagagtctctaagccgtccagagatgttactggtcggagctctggcaggttttacagctagcacaatcagctttccattggaggtggccaggaaacggctgatggttggagctatgcagggtaagtgcccgccccatatggcagctgcactttcagaagtgatacgggaggaaggtttattgggactctacagagggtggggtgcaagctgtttaaaggtcatgccttcatctggcatcacctggatgttttatgaagcttggaaagacatattgctcgttcagagacatcatcccttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

357

Amino Acids

39.21

Weight (kDa)

9.05

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	645, 1072
Acc36I	ACCTGC	1 cut(s)	809
AciI	CCGC	3 cut(s)	93, 361, 902
AclWI	GGATC	3 cut(s)	280, 352, 591
AcoI	YGGCCR	2 cut(s)	54, 858
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	4 cut(s)	20, 44, 715, 734
AfiI	CCNNNNNNNGG	6 cut(s)	152, 193, 376, 620, 867, 1004
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	572, 580
AhdI	GACNNNNNGTC	1 cut(s)	597
AjnI	CCWGG	4 cut(s)	375, 500, 860, 1013
AleI	CACNNNNGTG	3 cut(s)	50, 554, 556
Alw21I	GWGCWC	2 cut(s)	117, 814
Alw26I	GTCTC	3 cut(s)	233, 783, 1051
AlwI	GGATC	3 cut(s)	280, 352, 591
AoxI	GGCC	5 cut(s)	54, 90, 454, 472, 858
ApeKI	GCWGC	4 cut(s)	530, 533, 914, 917
AspS9I	GGNCC	2 cut(s)	455, 473
AsuHPI	GGTGA	3 cut(s)	191, 675, 1003
AsuNHI	GCTAGC	2 cut(s)	545, 830
AxyI	CCTNAGG	1 cut(s)	603
BaeGI	GKGCMC	1 cut(s)	902
BalI	TGGCCA	2 cut(s)	56, 860
BanII	GRGCYC	2 cut(s)	117, 814
Bbv12I	GWGCWC	2 cut(s)	117, 814
BbvI	GCAGC	4 cut(s)	517, 520, 904, 926
BccI	CCATC	4 cut(s)	109, 155, 251, 868
BceAI	ACGGC	2 cut(s)	771, 884
BcgI	CGANNNNNNTGC	2 cut(s)	405, 439
BciT130I	CCWGG	4 cut(s)	377, 502, 862, 1015
BcoDI	GTCTC	3 cut(s)	233, 783, 1051
BfaI	CTAG	5 cut(s)	252, 276, 546, 615, 831
BfmI	CTRYAG	2 cut(s)	709, 961
BfuAI	ACCTGC	1 cut(s)	809
BisI	GCNGC	5 cut(s)	93, 531, 534, 915, 918
BlsI	GCNGC	5 cut(s)	94, 532, 535, 916, 919
Bme1390I	CCNGG	4 cut(s)	377, 502, 862, 1015
BmeRI	GACNNNNNGTC	1 cut(s)	597
BmgT120I	GGNCC	2 cut(s)	455, 473
BmrFI	CCNGG	4 cut(s)	377, 502, 862, 1015
BmsI	GCATC	2 cut(s)	690, 1017
BmtI	GCTAGC	2 cut(s)	549, 834
BpuEI	CTTGAG	3 cut(s)	95, 181, 257
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	375
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	6 cut(s)	152, 193, 376, 620, 867, 1004
Bse1I	ACTGG	2 cut(s)	48, 807
Bse21I	CCTNAGG	1 cut(s)	603
Bse3DI	GCAATG	2 cut(s)	216, 423
BseBI	CCWGG	4 cut(s)	377, 502, 862, 1015
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	5 cut(s)	101, 562, 705, 1023, 1063
BseLI	CCNNNNNNNGG	6 cut(s)	152, 193, 376, 620, 867, 1004
BseMI	GCAATG	2 cut(s)	216, 423
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	2 cut(s)	48, 807
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	902
BseXI	GCAGC	4 cut(s)	517, 520, 904, 926
BsgI	GTGCAG	1 cut(s)	903
BshFI	GGCC	5 cut(s)	56, 92, 456, 474, 860
BsiHKAI	GWGCWC	2 cut(s)	117, 814
BslFI	GGGAC	4 cut(s)	50, 353, 406, 969
BslI	CCNNNNNNNGG	6 cut(s)	152, 193, 376, 620, 867, 1004
BsmAI	GTCTC	3 cut(s)	233, 783, 1051
BsmFI	GGGAC	4 cut(s)	50, 353, 406, 969
BsnI	GGCC	5 cut(s)	56, 92, 456, 474, 860
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	3 cut(s)	117, 814, 902
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	272, 357, 583
BspACI	CCGC	3 cut(s)	93, 361, 902
BspANI	GGCC	5 cut(s)	56, 92, 456, 474, 860
BspCNI	CTCAG	1 cut(s)	595
BspMI	ACCTGC	1 cut(s)	809
BspOI	GCTAGC	2 cut(s)	549, 834
BspPI	GGATC	3 cut(s)	280, 352, 591
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	216, 423
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	48, 807
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	272, 357, 583
Bst2UI	CCWGG	4 cut(s)	377, 502, 862, 1015
Bst4CI	ACNGT	3 cut(s)	23, 595, 713
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	42
BstC8I	GCNNGC	4 cut(s)	547, 832, 902, 979
BstDEI	CTNAG	4 cut(s)	188, 298, 603, 782
BstENI	CCTNNNNNAGG	1 cut(s)	618
BstF5I	GGATG	5 cut(s)	101, 562, 705, 1023, 1063
BstKTI	GATC	3 cut(s)	275, 360, 586
BstMAI	GTCTC	3 cut(s)	233, 783, 1051
BstMBI	GATC	3 cut(s)	272, 357, 583
BstMWI	GCNNNNNNNGC	7 cut(s)	227, 322, 344, 480, 530, 542, 840
BstNI	CCWGG	4 cut(s)	377, 502, 862, 1015
BstNSI	RCATGY	2 cut(s)	43, 720
BstSCI	CCNGG	4 cut(s)	375, 500, 860, 1013
BstSFI	CTRYAG	2 cut(s)	709, 961
BstSLI	GKGCMC	1 cut(s)	902
BstV1I	GCAGC	4 cut(s)	517, 520, 904, 926
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
Bsu36I	CCTNAGG	1 cut(s)	603
BsuRI	GGCC	5 cut(s)	56, 92, 456, 474, 860
BtsCI	GGATG	5 cut(s)	101, 562, 705, 1023, 1063
BtsIMutI	CAGTG	3 cut(s)	28, 55, 689
BveI	ACCTGC	1 cut(s)	809
Cac8I	GCNNGC	4 cut(s)	547, 832, 902, 979
Cfr13I	GGNCC	2 cut(s)	455, 473
Csp6I	GTAC	4 cut(s)	19, 43, 714, 733
CspCI	CAANNNNNGTGG	4 cut(s)	314, 349, 419, 454
CviAII	CATG	5 cut(s)	40, 666, 717, 730, 994
CviQI	GTAC	4 cut(s)	19, 43, 714, 733
DdeI	CTNAG	4 cut(s)	188, 298, 603, 782
DpnI	GATC	3 cut(s)	274, 359, 585
DpnII	GATC	3 cut(s)	272, 357, 583
DraI	TTTAAA	1 cut(s)	987
DriI	GACNNNNNGTC	1 cut(s)	597
EaeI	YGGCCR	2 cut(s)	54, 858
Eam1105I	GACNNNNNGTC	1 cut(s)	597
Ecl136II	GAGCTC	2 cut(s)	115, 812
Eco24I	GRGCYC	2 cut(s)	117, 814
Eco31I	GGTCTC	1 cut(s)	233
Eco53kI	GAGCTC	2 cut(s)	115, 812
Eco57I	CTGAAG	1 cut(s)	471
Eco81I	CCTNAGG	1 cut(s)	603
EcoICRI	GAGCTC	2 cut(s)	115, 812
EcoNI	CCTNNNNNAGG	1 cut(s)	618
EcoRII	CCWGG	4 cut(s)	375, 500, 860, 1013
EcoT38I	GRGCYC	2 cut(s)	117, 814
FaeI	CATG	5 cut(s)	43, 669, 720, 733, 997
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	4 cut(s)	50, 353, 406, 969
FatI	CATG	5 cut(s)	39, 665, 716, 729, 993
FauI	CCCGC	1 cut(s)	909
FauNDI	CATATG	1 cut(s)	909
Fnu4HI	GCNGC	5 cut(s)	93, 531, 534, 915, 918
FokI	GGATG	5 cut(s)	88, 549, 712, 1030, 1050
FriOI	GRGCYC	2 cut(s)	117, 814
Fsp4HI	GCNGC	5 cut(s)	93, 531, 534, 915, 918
FspBI	CTAG	5 cut(s)	252, 276, 546, 615, 831
GluI	GCNGC	5 cut(s)	93, 531, 534, 915, 918
HaeIII	GGCC	5 cut(s)	56, 92, 456, 474, 860
Hin1II	CATG	5 cut(s)	43, 669, 720, 733, 997
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HindIII	AAGCTT	2 cut(s)	481, 1029
HinfI	GANTC	3 cut(s)	156, 776, 957
HphI	GGTGA	3 cut(s)	191, 675, 1003
Hpy166II	GTNNAC	2 cut(s)	45, 591
Hpy188I	TCNGA	4 cut(s)	152, 809, 928, 1056
Hpy188III	TCNNGA	7 cut(s)	160, 236, 247, 276, 602, 745, 791
Hpy8I	GTNNAC	2 cut(s)	45, 591
HpyAV	CCTTC	5 cut(s)	446, 574, 644, 938, 1008
HpyCH4III	ACNGT	3 cut(s)	23, 595, 713
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	5 cut(s)	347, 466, 889, 920, 977
HpyF10VI	GCNNNNNNNGC	7 cut(s)	227, 322, 344, 480, 530, 542, 840
HpyF3I	CTNAG	4 cut(s)	188, 298, 603, 782
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	5 cut(s)	43, 669, 720, 733, 997
Kzo9I	GATC	3 cut(s)	272, 357, 583
LmnI	GCTCC	4 cut(s)	120, 235, 809, 881
Lsp1109I	GCAGC	4 cut(s)	517, 520, 904, 926
LweI	GCATC	2 cut(s)	690, 1017
MaeI	CTAG	5 cut(s)	252, 276, 546, 615, 831
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	798
MalI	GATC	3 cut(s)	274, 359, 585
MboI	GATC	3 cut(s)	272, 357, 583
MboII	GAAGA	2 cut(s)	16, 25
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	3 cut(s)	117, 814, 902
MlsI	TGGCCA	2 cut(s)	56, 860
MluCI	AATT	3 cut(s)	125, 468, 540
MluNI	TGGCCA	2 cut(s)	56, 860
MlyI	GAGTC	2 cut(s)	785, 951
MmeI	TCCRAC	3 cut(s)	250, 787, 859
Mox20I	TGGCCA	2 cut(s)	56, 860
MscI	TGGCCA	2 cut(s)	56, 860
MseI	TTAA	2 cut(s)	408, 986
MslI	CAYNNNNRTG	4 cut(s)	50, 554, 556, 1016
Msp20I	TGGCCA	2 cut(s)	56, 860
MspA1I	CMGCKG	1 cut(s)	917
MspR9I	CCNGG	4 cut(s)	377, 502, 862, 1015
MvaI	CCWGG	4 cut(s)	377, 502, 862, 1015
MwoI	GCNNNNNNNGC	7 cut(s)	227, 322, 344, 480, 530, 542, 840
NdeI	CATATG	1 cut(s)	909
NdeII	GATC	3 cut(s)	272, 357, 583
NheI	GCTAGC	2 cut(s)	545, 830
NlaIII	CATG	5 cut(s)	43, 669, 720, 733, 997
NspI	RCATGY	2 cut(s)	43, 720
OliI	CACNNNNGTG	3 cut(s)	50, 554, 556
PciI	ACATGT	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	156
PfoI	TCCNGGA	1 cut(s)	500
PkrI	GCNGC	5 cut(s)	94, 532, 535, 916, 919
PleI	GAGTC	2 cut(s)	784, 951
PpsI	GAGTC	2 cut(s)	784, 951
PscI	ACATGT	1 cut(s)	39
PsiI	TTATAA	2 cut(s)	645, 1072
Psp124BI	GAGCTC	2 cut(s)	117, 814
Psp6I	CCWGG	4 cut(s)	375, 500, 860, 1013
PspGI	CCWGG	4 cut(s)	375, 500, 860, 1013
PspPI	GGNCC	2 cut(s)	455, 473
PsuI	RGATCY	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	4 cut(s)	20, 44, 715, 734
RsaNI	GTAC	4 cut(s)	19, 43, 714, 733
RseI	CAYNNNNRTG	4 cut(s)	50, 554, 556, 1016
SacI	GAGCTC	2 cut(s)	117, 814
SaqAI	TTAA	2 cut(s)	408, 986
SatI	GCNGC	5 cut(s)	93, 531, 534, 915, 918
Sau3AI	GATC	3 cut(s)	272, 357, 583
Sau96I	GGNCC	2 cut(s)	455, 473
SchI	GAGTC	2 cut(s)	785, 951
ScrFI	CCNGG	4 cut(s)	377, 502, 862, 1015
SduI	GDGCHC	3 cut(s)	117, 814, 902
SfaNI	GCATC	2 cut(s)	690, 1017
SfcI	CTRYAG	2 cut(s)	709, 961
SmiMI	CAYNNNNRTG	4 cut(s)	50, 554, 556, 1016
SmlI	CTYRAG	3 cut(s)	74, 160, 236
SmoI	CTYRAG	3 cut(s)	74, 160, 236
Sse9I	AATT	3 cut(s)	125, 468, 540
SsiI	CCGC	3 cut(s)	93, 361, 902
SspMI	CTAG	5 cut(s)	252, 276, 546, 615, 831
SstI	GAGCTC	2 cut(s)	117, 814
StyD4I	CCNGG	4 cut(s)	375, 500, 860, 1013
TaaI	ACNGT	3 cut(s)	23, 595, 713
TaiI	ACGT	1 cut(s)	398
TasI	AATT	3 cut(s)	125, 468, 540
TatI	WGTACW	3 cut(s)	18, 42, 713
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	2 cut(s)	408, 986
Tru9I	TTAA	2 cut(s)	408, 986
TscAI	CASTG	3 cut(s)	28, 55, 696
TseI	GCWGC	4 cut(s)	530, 533, 914, 917
TspDTI	ATGAA	5 cut(s)	17, 654, 718, 990, 1041
TspRI	CASTG	3 cut(s)	28, 55, 696
XagI	CCTNNNNNAGG	1 cut(s)	618
XbaI	TCTAGA	1 cut(s)	275
XceI	RCATGY	2 cut(s)	43, 720
XspI	CTAG	5 cut(s)	252, 276, 546, 615, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.