Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Forward (+)

52591785 .. 52632088

Gene Structure 40304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0410200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCACCAATCACCAACGACAACTCCACCGCTATGCCGACAATGACGGACTCCGGCAACACCACCACCACCAACCTCCCTCCAACCCCAACACCATTCGAAACTCTCATCCCCAATGCCGAGATTCCCGAAAGCTTATCATCTGCAGCTGCTTCACCAAAGAGTGAAGGTGCAAGCACTGAACCAGAACCCAAAGCCGTCGCGGCGGCCACTGAGTCCTCTGAAAGCAGCGGCGGCGAGGTGGTTTTTGTGGGGAGGAAGAACAGGGCCGTGTCTTGGGGTTACAGCTTGAACATAGGAAGGAGACGAGGAATGGAAGACACCCTTACCATTGTTCCTTCTTTTATGAAAATTCCCTGTGCTTCTGTCGGCGGGTGTACAGCGCCGGAGTGTACGTACGTCACGGAGGAGTCGTCGGTTCACTACTTCGGTTTGTTTGATGGCCACGGCGGCTCTGAGGTGAGTCGTTATTGCTCCAAAAGCCTCCATGAACTGTTGGCAGAGGAGTGGGAAAAAGGAAGCGGTGAAGATCAGTGGAATAAAAGGTGGACGGGAGCCCTTGTTAGGGCTTACAACAGAGCAGATGATGCTTTTATAGACAACACATTAGCACCAGATACAGTTGGATCCACAGCTGTGGTAGTGATTCTGTCAGCCTGTCAGATCATTGTTGCCAATTGCGGTGACTCTAGGGCTGTGCTTTGTCGTGGAAATCAAGTGATCCCTTTGACTGTCGACCACAAGCCTGACAGAGACGATGAAGTAATTAGAGTTACTGAAGCAGGGGGCAGGATTCTGTATGTTGGATGCCCTACAGTTGAGGGGGTTCTCACTATGACAAGAGCAATAGGTGACCAAGATCTAAAGCCGTGGATTATTTCAGAGCCAGAAGTTACTTTTTTGACCAGAACTGATACTGATGAATGCTTGATTCTGGCGAGTGATGGCTTATGGGATGTGATGTCTAATGAAAAGGTGATGGCGATGGCTCGCAGGATGCTGAGGGAGCTTCGCAATCAGTATGCAACGGCAGCCAATGGATCAGTCAGCCCAGCACAGTATGTTGCAGAAGAAGTCCTCAAGAATGCTCTTCGAACTAGTACTGATAACGTCTCCATTATTGTTGTTGACCTGAAAAGGCTGAGGAGAAGGATGCAACAAAAGGCAGAAGCCGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

393

Amino Acids

42.56

Weight (kDa)

4.87

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	105 - 358	4.1e-58	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	735
AccII	CGCG	1 cut(s)	203
AciI	CCGC	9 cut(s)	30, 203, 206, 231, 234, 372, 450, 522, 681
AclWI	GGATC	4 cut(s)	621, 634, 715, 1048
AcoI	YGGCCR	2 cut(s)	207, 442
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	4 cut(s)	379, 394, 398, 1102
AfiI	CCNNNNNNNGG	3 cut(s)	276, 564, 565
AgsI	TTSAA	1 cut(s)	292
AhlI	ACTAGT	1 cut(s)	1097
AleI	CACNNNNGTG	1 cut(s)	635
AluBI	AGCT	5 cut(s)	135, 149, 288, 635, 1009
AluI	AGCT	5 cut(s)	135, 149, 288, 635, 1009
Alw26I	GTCTC	3 cut(s)	298, 747, 1117
AlwI	GGATC	4 cut(s)	621, 634, 715, 1048
AoxI	GGCC	3 cut(s)	207, 267, 442
ApeKI	GCWGC	4 cut(s)	146, 149, 228, 1031
ApoI	RAATTY	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	7 cut(s)	4, 147, 472, 536, 695, 863, 988
AsuII	TTCGAA	2 cut(s)	99, 1093
BalI	TGGCCA	1 cut(s)	444
BamHI	GGATCC	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	324
BbvCI	CCTCAGC	2 cut(s)	1001, 1142
BbvI	GCAGC	4 cut(s)	136, 158, 240, 1043
BccI	CCATC	4 cut(s)	434, 938, 973, 979
BceAI	ACGGC	5 cut(s)	182, 254, 463, 853, 1044
BcoDI	GTCTC	3 cut(s)	298, 747, 1117
BcuI	ACTAGT	1 cut(s)	1097
BfaI	CTAG	2 cut(s)	690, 1098
BfmI	CTRYAG	2 cut(s)	144, 813
BfoI	RGCGCY	1 cut(s)	386
BglI	GCCNNNNNGGC	2 cut(s)	203, 450
BglII	AGATCT	1 cut(s)	859
BisI	GCNGC	9 cut(s)	147, 150, 204, 207, 229, 232, 235, 451, 1032
BlsI	GCNGC	9 cut(s)	148, 151, 205, 208, 230, 233, 236, 452, 1033
BmcAI	AGTACT	1 cut(s)	1102
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	3 cut(s)	6, 556, 628
BmsI	GCATC	4 cut(s)	577, 797, 987, 1143
BpiI	GAAGAC	1 cut(s)	324
Bpu10I	CCTNAGC	2 cut(s)	1001, 1142
Bpu14I	TTCGAA	2 cut(s)	99, 1093
BpuEI	CTTGAG	1 cut(s)	1064
BsaAI	YACGTR	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	445, 869
BsaXI	ACNNNNNCTCC	8 cut(s)	8, 38, 380, 398, 410, 428, 546, 576
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 564, 565
BseDI	CCNNGG	2 cut(s)	445, 869
BseGI	GGATG	5 cut(s)	108, 812, 961, 1002, 1158
BseLI	CCNNNNNNNGG	3 cut(s)	276, 564, 565
BseMII	CTCAG	4 cut(s)	204, 447, 992, 1133
BseRI	GAGGAG	3 cut(s)	422, 518, 1159
BseXI	GCAGC	4 cut(s)	136, 158, 240, 1043
BseYI	CCCAGC	1 cut(s)	1051
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	3 cut(s)	209, 269, 444
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	54, 386
BsiWI	CGTACG	1 cut(s)	396
BslI	CCNNNNNNNGG	3 cut(s)	276, 564, 565
BsmAI	GTCTC	3 cut(s)	298, 747, 1117
BsmBI	CGTCTC	3 cut(s)	298, 747, 1117
BsmI	GAATGC	2 cut(s)	929, 1090
BsnI	GGCC	3 cut(s)	209, 269, 444
Bsp119I	TTCGAA	2 cut(s)	99, 1093
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp1407I	TGTACA	1 cut(s)	377
Bsp143I	GATC	6 cut(s)	529, 626, 663, 720, 859, 1040
BspACI	CCGC	9 cut(s)	30, 203, 206, 231, 234, 372, 450, 522, 681
BspANI	GGCC	3 cut(s)	209, 269, 444
BspCNI	CTCAG	4 cut(s)	205, 448, 993, 1134
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	3 cut(s)	6, 556, 628
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	4 cut(s)	621, 634, 715, 1048
BspQI	GCTCTTC	1 cut(s)	1095
BspT104I	TTCGAA	2 cut(s)	99, 1093
BspT107I	GGYRCC	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	445, 869
BssMI	GATC	6 cut(s)	529, 626, 663, 720, 859, 1040
Bst4CI	ACNGT	5 cut(s)	495, 622, 733, 817, 1059
Bst6I	CTCTTC	1 cut(s)	1095
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstAUI	TGTACA	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	396
BstBI	TTCGAA	2 cut(s)	99, 1093
BstC8I	GCNNGC	2 cut(s)	175, 991
BstDEI	CTNAG	4 cut(s)	213, 456, 1001, 1142
BstDSI	CCRYGG	2 cut(s)	445, 869
BstEII	GGTNACC	1 cut(s)	851
BstF5I	GGATG	5 cut(s)	108, 812, 961, 1002, 1158
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	6 cut(s)	532, 629, 666, 723, 862, 1043
BstMAI	GTCTC	3 cut(s)	298, 747, 1117
BstMBI	GATC	6 cut(s)	529, 626, 663, 720, 859, 1040
BstMWI	GCNNNNNNNGC	7 cut(s)	203, 234, 450, 480, 587, 1006, 1031
BstPI	GGTNACC	1 cut(s)	851
BstSFI	CTRYAG	2 cut(s)	144, 813
BstSNI	TACGTA	1 cut(s)	396
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	4 cut(s)	136, 158, 240, 1043
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	2 cut(s)	626, 859
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	2 cut(s)	626, 859
BsuRI	GGCC	3 cut(s)	209, 269, 444
BtgI	CCRYGG	2 cut(s)	445, 869
BtgZI	GCGATG	1 cut(s)	998
BtsCI	GGATG	5 cut(s)	108, 812, 961, 1002, 1158
BtsIMutI	CAGTG	3 cut(s)	177, 210, 539
Cac8I	GCNNGC	2 cut(s)	175, 991
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	4 cut(s)	378, 393, 397, 1101
CviAII	CATG	1 cut(s)	488
CviQI	GTAC	4 cut(s)	378, 393, 397, 1101
DdeI	CTNAG	4 cut(s)	213, 456, 1001, 1142
DpnI	GATC	6 cut(s)	531, 628, 665, 722, 861, 1042
DpnII	GATC	6 cut(s)	529, 626, 663, 720, 859, 1040
EaeI	YGGCCR	2 cut(s)	207, 442
Eam1104I	CTCTTC	1 cut(s)	1095
EarI	CTCTTC	1 cut(s)	1095
Eco105I	TACGTA	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	798
Eco91I	GGTNACC	1 cut(s)	851
EcoO65I	GGTNACC	1 cut(s)	851
EcoT38I	GRGCYC	1 cut(s)	559
Esp3I	CGTCTC	3 cut(s)	298, 747, 1117
FaeI	CATG	1 cut(s)	491
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	1 cut(s)	487
FauI	CCCGC	1 cut(s)	365
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	9 cut(s)	147, 150, 204, 207, 229, 232, 235, 451, 1032
FokI	GGATG	5 cut(s)	95, 819, 968, 1009, 1165
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	9 cut(s)	147, 150, 204, 207, 229, 232, 235, 451, 1032
FspBI	CTAG	2 cut(s)	690, 1098
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	9 cut(s)	147, 150, 204, 207, 229, 232, 235, 451, 1032
GsaI	CCCAGC	1 cut(s)	1055
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	209, 269, 444
HapII	CCGG	2 cut(s)	54, 386
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	491
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	2 cut(s)	736, 1129
HindII	GTYRAC	2 cut(s)	736, 1129
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	9 cut(s)	50, 124, 215, 410, 463, 646, 686, 793, 931
HpaII	CCGG	2 cut(s)	54, 386
HphI	GGTGA	7 cut(s)	4, 147, 472, 536, 695, 863, 988
Hpy166II	GTNNAC	6 cut(s)	378, 393, 421, 549, 736, 1129
Hpy188I	TCNGA	4 cut(s)	223, 457, 663, 883
Hpy188III	TCNNGA	2 cut(s)	128, 1081
Hpy8I	GTNNAC	6 cut(s)	378, 393, 421, 549, 736, 1129
Hpy99I	CGWCG	2 cut(s)	203, 418
HpyAV	CCTTC	4 cut(s)	161, 294, 348, 1143
HpyCH4III	ACNGT	5 cut(s)	495, 622, 733, 817, 1059
HpyCH4IV	ACGT	3 cut(s)	395, 399, 1110
HpyCH4V	TGCA	5 cut(s)	146, 173, 1025, 1067, 1156
HpyF10VI	GCNNNNNNNGC	7 cut(s)	203, 234, 450, 480, 587, 1006, 1031
HpyF3I	CTNAG	4 cut(s)	213, 456, 1001, 1142
HpySE526I	ACGT	3 cut(s)	395, 399, 1110
Hsp92II	CATG	1 cut(s)	491
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	6 cut(s)	529, 626, 663, 720, 859, 1040
LguI	GCTCTTC	1 cut(s)	1095
LmnI	GCTCC	3 cut(s)	479, 554, 1006
Lsp1109I	GCAGC	4 cut(s)	136, 158, 240, 1043
LweI	GCATC	4 cut(s)	577, 797, 987, 1143
MaeI	CTAG	2 cut(s)	690, 1098
MaeII	ACGT	3 cut(s)	395, 399, 1110
MaeIII	GTNAC	6 cut(s)	281, 400, 683, 772, 851, 892
MalI	GATC	6 cut(s)	531, 628, 665, 722, 861, 1042
MboI	GATC	6 cut(s)	529, 626, 663, 720, 859, 1040
MboII	GAAGA	5 cut(s)	271, 329, 539, 1082, 1082
MfeI	CAATTG	1 cut(s)	676
MflI	RGATCY	2 cut(s)	626, 859
MhlI	GDGCHC	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	444
MluCI	AATT	3 cut(s)	351, 676, 765
MluNI	TGGCCA	1 cut(s)	444
MlyI	GAGTC	5 cut(s)	44, 224, 419, 472, 680
MmeI	TCCRAC	3 cut(s)	107, 604, 784
Mox20I	TGGCCA	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	444
MslI	CAYNNNNRTG	2 cut(s)	32, 635
Msp20I	TGGCCA	1 cut(s)	444
MspA1I	CMGCKG	3 cut(s)	149, 231, 635
MspI	CCGG	2 cut(s)	54, 386
MunI	CAATTG	1 cut(s)	676
Mva1269I	GAATGC	2 cut(s)	929, 1090
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	7 cut(s)	203, 234, 450, 480, 587, 1006, 1031
NdeII	GATC	6 cut(s)	529, 626, 663, 720, 859, 1040
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	3 cut(s)	6, 556, 628
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	3 cut(s)	400, 683, 851
NspV	TTCGAA	2 cut(s)	99, 1093
OliI	CACNNNNGTG	1 cut(s)	635
PciSI	GCTCTTC	1 cut(s)	1095
PcsI	WCGNNNNNNNCGW	1 cut(s)	410
PctI	GAATGC	2 cut(s)	929, 1090
PfeI	GAWTC	4 cut(s)	124, 646, 793, 931
Pfl23II	CGTACG	1 cut(s)	396
PkrI	GCNGC	9 cut(s)	148, 151, 205, 208, 230, 233, 236, 452, 1033
PleI	GAGTC	5 cut(s)	44, 223, 418, 471, 680
PpsI	GAGTC	5 cut(s)	44, 223, 418, 471, 680
Ppu21I	YACGTR	1 cut(s)	396
PspEI	GGTNACC	1 cut(s)	851
PspFI	CCCAGC	1 cut(s)	1051
PspLI	CGTACG	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	6, 556, 628
PspPI	GGNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	626, 859
PvuII	CAGCTG	2 cut(s)	149, 635
RsaI	GTAC	4 cut(s)	379, 394, 398, 1102
RsaNI	GTAC	4 cut(s)	378, 393, 397, 1101
RseI	CAYNNNNRTG	2 cut(s)	32, 635
SalI	GTCGAC	1 cut(s)	734
SapI	GCTCTTC	1 cut(s)	1095
SatI	GCNGC	9 cut(s)	147, 150, 204, 207, 229, 232, 235, 451, 1032
Sau3AI	GATC	6 cut(s)	529, 626, 663, 720, 859, 1040
Sau96I	GGNCC	1 cut(s)	267
ScaI	AGTACT	1 cut(s)	1102
SchI	GAGTC	5 cut(s)	44, 224, 419, 472, 680
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	4 cut(s)	577, 797, 987, 1143
SfcI	CTRYAG	2 cut(s)	144, 813
SfuI	TTCGAA	2 cut(s)	99, 1093
SmiMI	CAYNNNNRTG	2 cut(s)	32, 635
SmlI	CTYRAG	1 cut(s)	1079
SmoI	CTYRAG	1 cut(s)	1079
SnaBI	TACGTA	1 cut(s)	396
SpeI	ACTAGT	1 cut(s)	1097
Sse9I	AATT	3 cut(s)	351, 676, 765
SsiI	CCGC	9 cut(s)	30, 203, 206, 231, 234, 372, 450, 522, 681
SspMI	CTAG	2 cut(s)	690, 1098
TaaI	ACNGT	5 cut(s)	495, 622, 733, 817, 1059
TaiI	ACGT	3 cut(s)	398, 402, 1113
TaqI	TCGA	3 cut(s)	99, 735, 1093
TasI	AATT	3 cut(s)	351, 676, 765
TatI	WGTACW	2 cut(s)	377, 1100
TauI	GCSGC	5 cut(s)	206, 209, 234, 237, 453
TfiI	GAWTC	4 cut(s)	124, 646, 793, 931
TscAI	CASTG	3 cut(s)	184, 217, 539
TseFI	GTSAC	3 cut(s)	400, 683, 851
TseI	GCWGC	4 cut(s)	146, 149, 228, 1031
Tsp45I	GTSAC	3 cut(s)	400, 683, 851
TspDTI	ATGAA	5 cut(s)	362, 504, 774, 936, 984
TspGWI	ACGGA	2 cut(s)	62, 419
TspRI	CASTG	3 cut(s)	184, 217, 539
XapI	RAATTY	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	2 cut(s)	690, 1098
ZrmI	AGTACT	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.