Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Forward (+)

63264520 .. 63268821

Gene Structure 4302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G038320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTACTAACCAGGAAAAGCATGGCATTTGAATCACAGTCTATGAAGAAGGAGAAGAAGTACAGTGGGGTTTTTGGGGACATGTACACCAGTGTGGCCATTATTCCCAAAGACCTTGAGCTTGACAAGGAGGCCCACCCATCACCCTTTGAGCTCCACTTCCAATTCCCTGACCTCTCCCAACCCATCAGAGGATTCTTGAGGACAAGAGAAGTTGGTGAGTTCCTTAGTGGGGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGACTAGAATGATCGTTGGTGTTGGATCTAGAAACATCTCTGGCAGTTTCTTAGAGGTCATTGAGAAGCAGGGTTGGCAAGGGCTGTGGGCAGGAAATGCAGTCAATATGATCCGCATAGTCCCCACCCAGGCAGTTGAGTTTGGGACGTTTGAGTTTGTTAAACGAGCAATGACATCGGCACAAGAGAAGTGGAAGCAGACTGAAGGCCCAAAGGTGCAAATTGGCCCTGTAAGCTTGGACTTCTCTATCTCCTGGATTTCTCCTGTTGCTGTGGCTGGTGCTGCTGCTGGAATTGCTAGCACACTTGTGTGTCATCCCCTTGAAGTTTTGAAGGATCGGTTGACTGTCTGTCCTGAGGCATATCCTAGTATAGGTGTAGCAATCTGTAAGATTTATAAGGAAGGTGGTATTGCTTCATGCTATTCGGGTCTTTCACCTACACTGATTGGGATGCTTCCCTACAGTACATGCTATTATTTCATGTACGAGAAAATCAAGAAATCCTACTGCCTAACAAAGAAAAAACAGTCTCTAAGCCGTCCAGAGATGTTACTGGTCGGAGCTCTGGCAGGTTTTACAGCTAGCACAATCAGCTTTCCATTGGAGGTGGCCAGGAAACGGCTGATGGTTGGAGCTATGCAGGGTAAGTGCCCGCCCCATATGGCAGCTGCACTTTCAGAAGTGATACGGGAGGAAGGTTTATTGGGACTCTACAGAGGGTGGGGTGCAAGCTGTTTAAAGGTCATGCCTTCATCTGGCATCACCTGGATGTTTTATGAAGCTTGGAAAGACATATTGCTCGTTCAGAGACATCATCCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

370

Amino Acids

40.74

Weight (kDa)

9.19

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	73 - 154	9e-20	Mitochondrial carrier protein
Mito_carr	PF00153	186 - 265	5.3e-18	Mitochondrial carrier protein
Mito_carr	PF00153	277 - 363	3.3e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	684, 1111
Acc36I	ACCTGC	1 cut(s)	848
AciI	CCGC	2 cut(s)	400, 941
AclWI	GGATC	3 cut(s)	319, 391, 630
AcoI	YGGCCR	2 cut(s)	96, 897
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	5 cut(s)	6, 62, 86, 754, 773
AfiI	CCNNNNNNNGG	6 cut(s)	191, 232, 415, 659, 906, 1043
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	32, 611, 619
AhdI	GACNNNNNGTC	1 cut(s)	636
AjnI	CCWGG	5 cut(s)	11, 414, 539, 899, 1052
AleI	CACNNNNGTG	3 cut(s)	92, 593, 595
Alw21I	GWGCWC	2 cut(s)	156, 853
Alw26I	GTCTC	3 cut(s)	272, 822, 1090
AlwI	GGATC	3 cut(s)	319, 391, 630
AoxI	GGCC	5 cut(s)	96, 132, 493, 511, 897
ApeKI	GCWGC	4 cut(s)	569, 572, 953, 956
AspS9I	GGNCC	3 cut(s)	133, 494, 512
AsuHPI	GGTGA	4 cut(s)	135, 230, 714, 1042
AsuNHI	GCTAGC	2 cut(s)	584, 869
AxyI	CCTNAGG	1 cut(s)	642
BaeGI	GKGCMC	1 cut(s)	941
BalI	TGGCCA	2 cut(s)	98, 899
BanII	GRGCYC	2 cut(s)	156, 853
Bbv12I	GWGCWC	2 cut(s)	156, 853
BbvI	GCAGC	4 cut(s)	556, 559, 943, 965
BccI	CCATC	4 cut(s)	148, 194, 290, 907
BceAI	ACGGC	2 cut(s)	810, 923
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	5 cut(s)	13, 416, 541, 901, 1054
BcoDI	GTCTC	3 cut(s)	272, 822, 1090
BfaI	CTAG	5 cut(s)	291, 315, 585, 654, 870
BfmI	CTRYAG	2 cut(s)	748, 1000
BfuAI	ACCTGC	1 cut(s)	848
BisI	GCNGC	4 cut(s)	570, 573, 954, 957
BlsI	GCNGC	4 cut(s)	571, 574, 955, 958
Bme1390I	CCNGG	5 cut(s)	13, 416, 541, 901, 1054
BmeRI	GACNNNNNGTC	1 cut(s)	636
BmgT120I	GGNCC	3 cut(s)	133, 494, 512
BmrFI	CCNGG	5 cut(s)	13, 416, 541, 901, 1054
BmsI	GCATC	2 cut(s)	729, 1056
BmtI	GCTAGC	2 cut(s)	588, 873
BpuEI	CTTGAG	3 cut(s)	137, 220, 296
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	414
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	6 cut(s)	191, 232, 415, 659, 906, 1043
Bse1I	ACTGG	2 cut(s)	90, 846
Bse21I	CCTNAGG	1 cut(s)	642
Bse3DI	GCAATG	2 cut(s)	255, 462
BseBI	CCWGG	5 cut(s)	13, 416, 541, 901, 1054
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	4 cut(s)	601, 744, 1062, 1102
BseLI	CCNNNNNNNGG	6 cut(s)	191, 232, 415, 659, 906, 1043
BseMI	GCAATG	2 cut(s)	255, 462
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	2 cut(s)	90, 846
BseRI	GAGGAG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	941
BseXI	GCAGC	4 cut(s)	556, 559, 943, 965
BsgI	GTGCAG	1 cut(s)	942
BshFI	GGCC	5 cut(s)	98, 134, 495, 513, 899
BsiHKAI	GWGCWC	2 cut(s)	156, 853
BslFI	GGGAC	4 cut(s)	92, 392, 445, 1008
BslI	CCNNNNNNNGG	6 cut(s)	191, 232, 415, 659, 906, 1043
BsmAI	GTCTC	3 cut(s)	272, 822, 1090
BsmFI	GGGAC	4 cut(s)	92, 392, 445, 1008
BsnI	GGCC	5 cut(s)	98, 134, 495, 513, 899
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	3 cut(s)	156, 853, 941
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	4 cut(s)	297, 311, 396, 622
BspACI	CCGC	2 cut(s)	400, 941
BspANI	GGCC	5 cut(s)	98, 134, 495, 513, 899
BspCNI	CTCAG	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	848
BspOI	GCTAGC	2 cut(s)	588, 873
BspPI	GGATC	3 cut(s)	319, 391, 630
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	255, 462
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	90, 846
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	4 cut(s)	297, 311, 396, 622
Bst2UI	CCWGG	5 cut(s)	13, 416, 541, 901, 1054
Bst4CI	ACNGT	5 cut(s)	39, 65, 634, 752, 816
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	4 cut(s)	586, 871, 941, 1018
BstDEI	CTNAG	4 cut(s)	227, 337, 642, 821
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	4 cut(s)	601, 744, 1062, 1102
BstKTI	GATC	4 cut(s)	300, 314, 399, 625
BstMAI	GTCTC	3 cut(s)	272, 822, 1090
BstMBI	GATC	4 cut(s)	297, 311, 396, 622
BstMWI	GCNNNNNNNGC	7 cut(s)	266, 361, 383, 519, 569, 581, 879
BstNI	CCWGG	5 cut(s)	13, 416, 541, 901, 1054
BstNSI	RCATGY	2 cut(s)	85, 759
BstSCI	CCNGG	5 cut(s)	11, 414, 539, 899, 1052
BstSFI	CTRYAG	2 cut(s)	748, 1000
BstSLI	GKGCMC	1 cut(s)	941
BstV1I	GCAGC	4 cut(s)	556, 559, 943, 965
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
Bsu36I	CCTNAGG	1 cut(s)	642
BsuRI	GGCC	5 cut(s)	98, 134, 495, 513, 899
BtsCI	GGATG	4 cut(s)	601, 744, 1062, 1102
BtsIMutI	CAGTG	3 cut(s)	70, 97, 728
BveI	ACCTGC	1 cut(s)	848
Cac8I	GCNNGC	4 cut(s)	586, 871, 941, 1018
Cfr13I	GGNCC	3 cut(s)	133, 494, 512
Csp6I	GTAC	5 cut(s)	5, 61, 85, 753, 772
CspCI	CAANNNNNGTGG	4 cut(s)	353, 388, 458, 493
CviAII	CATG	6 cut(s)	22, 82, 705, 756, 769, 1033
CviQI	GTAC	5 cut(s)	5, 61, 85, 753, 772
DdeI	CTNAG	4 cut(s)	227, 337, 642, 821
DpnI	GATC	4 cut(s)	299, 313, 398, 624
DpnII	GATC	4 cut(s)	297, 311, 396, 622
DraI	TTTAAA	1 cut(s)	1026
DriI	GACNNNNNGTC	1 cut(s)	636
EaeI	YGGCCR	2 cut(s)	96, 897
Eam1105I	GACNNNNNGTC	1 cut(s)	636
Ecl136II	GAGCTC	2 cut(s)	154, 851
Eco24I	GRGCYC	2 cut(s)	156, 853
Eco31I	GGTCTC	1 cut(s)	272
Eco53kI	GAGCTC	2 cut(s)	154, 851
Eco57I	CTGAAG	1 cut(s)	510
Eco81I	CCTNAGG	1 cut(s)	642
EcoICRI	GAGCTC	2 cut(s)	154, 851
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRII	CCWGG	5 cut(s)	11, 414, 539, 899, 1052
EcoT38I	GRGCYC	2 cut(s)	156, 853
FaeI	CATG	6 cut(s)	25, 85, 708, 759, 772, 1036
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	4 cut(s)	92, 392, 445, 1008
FatI	CATG	6 cut(s)	21, 81, 704, 755, 768, 1032
FauI	CCCGC	1 cut(s)	948
FauNDI	CATATG	1 cut(s)	948
Fnu4HI	GCNGC	4 cut(s)	570, 573, 954, 957
FokI	GGATG	4 cut(s)	588, 751, 1069, 1089
FriOI	GRGCYC	2 cut(s)	156, 853
Fsp4HI	GCNGC	4 cut(s)	570, 573, 954, 957
FspBI	CTAG	5 cut(s)	291, 315, 585, 654, 870
GluI	GCNGC	4 cut(s)	570, 573, 954, 957
HaeIII	GGCC	5 cut(s)	98, 134, 495, 513, 899
Hin1II	CATG	6 cut(s)	25, 85, 708, 759, 772, 1036
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	2 cut(s)	520, 1068
HinfI	GANTC	3 cut(s)	32, 195, 996
HphI	GGTGA	4 cut(s)	135, 230, 714, 1042
Hpy166II	GTNNAC	2 cut(s)	87, 630
Hpy188I	TCNGA	4 cut(s)	191, 848, 967, 1095
Hpy188III	TCNNGA	7 cut(s)	199, 275, 286, 315, 641, 784, 830
Hpy8I	GTNNAC	2 cut(s)	87, 630
HpyAV	CCTTC	6 cut(s)	43, 485, 613, 683, 977, 1047
HpyCH4III	ACNGT	5 cut(s)	39, 65, 634, 752, 816
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	5 cut(s)	386, 505, 928, 959, 1016
HpyF10VI	GCNNNNNNNGC	7 cut(s)	266, 361, 383, 519, 569, 581, 879
HpyF3I	CTNAG	4 cut(s)	227, 337, 642, 821
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	6 cut(s)	25, 85, 708, 759, 772, 1036
Kzo9I	GATC	4 cut(s)	297, 311, 396, 622
LmnI	GCTCC	4 cut(s)	159, 274, 848, 920
Lsp1109I	GCAGC	4 cut(s)	556, 559, 943, 965
LweI	GCATC	2 cut(s)	729, 1056
MaeI	CTAG	5 cut(s)	291, 315, 585, 654, 870
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	837
MalI	GATC	4 cut(s)	299, 313, 398, 624
MboI	GATC	4 cut(s)	297, 311, 396, 622
MboII	GAAGA	2 cut(s)	58, 67
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	3 cut(s)	156, 853, 941
MlsI	TGGCCA	2 cut(s)	98, 899
MluCI	AATT	3 cut(s)	164, 507, 579
MluNI	TGGCCA	2 cut(s)	98, 899
MlyI	GAGTC	1 cut(s)	990
MmeI	TCCRAC	3 cut(s)	289, 826, 898
Mox20I	TGGCCA	2 cut(s)	98, 899
MscI	TGGCCA	2 cut(s)	98, 899
MseI	TTAA	2 cut(s)	447, 1025
MslI	CAYNNNNRTG	4 cut(s)	92, 593, 595, 1055
Msp20I	TGGCCA	2 cut(s)	98, 899
MspA1I	CMGCKG	1 cut(s)	956
MspR9I	CCNGG	5 cut(s)	13, 416, 541, 901, 1054
MvaI	CCWGG	5 cut(s)	13, 416, 541, 901, 1054
MwoI	GCNNNNNNNGC	7 cut(s)	266, 361, 383, 519, 569, 581, 879
NdeI	CATATG	1 cut(s)	948
NdeII	GATC	4 cut(s)	297, 311, 396, 622
NheI	GCTAGC	2 cut(s)	584, 869
NlaIII	CATG	6 cut(s)	25, 85, 708, 759, 772, 1036
NspI	RCATGY	2 cut(s)	85, 759
OliI	CACNNNNGTG	3 cut(s)	92, 593, 595
PciI	ACATGT	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	32, 195
PfoI	TCCNGGA	1 cut(s)	539
PkrI	GCNGC	4 cut(s)	571, 574, 955, 958
PleI	GAGTC	1 cut(s)	990
PpsI	GAGTC	1 cut(s)	990
PscI	ACATGT	1 cut(s)	81
PsiI	TTATAA	2 cut(s)	684, 1111
Psp124BI	GAGCTC	2 cut(s)	156, 853
Psp6I	CCWGG	5 cut(s)	11, 414, 539, 899, 1052
PspGI	CCWGG	5 cut(s)	11, 414, 539, 899, 1052
PspPI	GGNCC	3 cut(s)	133, 494, 512
PsuI	RGATCY	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	5 cut(s)	6, 62, 86, 754, 773
RsaNI	GTAC	5 cut(s)	5, 61, 85, 753, 772
RseI	CAYNNNNRTG	4 cut(s)	92, 593, 595, 1055
SacI	GAGCTC	2 cut(s)	156, 853
SaqAI	TTAA	2 cut(s)	447, 1025
SatI	GCNGC	4 cut(s)	570, 573, 954, 957
Sau3AI	GATC	4 cut(s)	297, 311, 396, 622
Sau96I	GGNCC	3 cut(s)	133, 494, 512
SchI	GAGTC	1 cut(s)	990
ScrFI	CCNGG	5 cut(s)	13, 416, 541, 901, 1054
SduI	GDGCHC	3 cut(s)	156, 853, 941
SfaNI	GCATC	2 cut(s)	729, 1056
SfcI	CTRYAG	2 cut(s)	748, 1000
SmiMI	CAYNNNNRTG	4 cut(s)	92, 593, 595, 1055
SmlI	CTYRAG	3 cut(s)	116, 199, 275
SmoI	CTYRAG	3 cut(s)	116, 199, 275
Sse9I	AATT	3 cut(s)	164, 507, 579
SsiI	CCGC	2 cut(s)	400, 941
SspMI	CTAG	5 cut(s)	291, 315, 585, 654, 870
SstI	GAGCTC	2 cut(s)	156, 853
StyD4I	CCNGG	5 cut(s)	11, 414, 539, 899, 1052
TaaI	ACNGT	5 cut(s)	39, 65, 634, 752, 816
TaiI	ACGT	1 cut(s)	437
TasI	AATT	3 cut(s)	164, 507, 579
TatI	WGTACW	3 cut(s)	60, 84, 752
TfiI	GAWTC	2 cut(s)	32, 195
Tru1I	TTAA	2 cut(s)	447, 1025
Tru9I	TTAA	2 cut(s)	447, 1025
TscAI	CASTG	3 cut(s)	70, 97, 735
TseI	GCWGC	4 cut(s)	569, 572, 953, 956
TspDTI	ATGAA	5 cut(s)	59, 693, 757, 1029, 1080
TspRI	CASTG	3 cut(s)	70, 97, 735
XagI	CCTNNNNNAGG	1 cut(s)	657
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	2 cut(s)	85, 759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XspI	CTAG	5 cut(s)	291, 315, 585, 654, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.