Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Reverse (-)

1743606 .. 1747945

Gene Structure 4340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGATACTGATAAGGAAAAGCATGGCATTTGAATCACAGTCTCTGAAGAAGGAGAAGAAGTACAGTGGGGTATTTGAGGATGTGTACAGTATGGCCATACTTCCCAAAGAGCTTGAGCTTGAGAAGGAATCCCACCCAAAATTCGAGCTCCGGTTTCAACTCCCTGACCTCATCCAACCCATCAGAGAATTCTCAAGGACAAGAGAAGTTAGAGAGTTCCTTAGTGGAGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGACTAGAATGGTAGTTGGTGTCGGATCTAGACACATTTCTGGCAGTTTCTTAGAGGTCATTGAGAAGCAGGGTTGGCAAGGACTGTGGGCTGGAAATGCAGTCAATATGATTCGCATAATCCCCACCCAAGCAATTGAGTTTGCAACATTTGAGTGTGTTAAGCGAGCAATGACCTCAACACAAGAGAAATGGAAGCAGGCTGAATCCCATAAGGTGCAAATTGGCCCTGTAAGCTTGAACCTCTCTATCTCCTGGATTTCTCCTGTTGCTGTGGCTGGTGCTGCTGCCGGAGTTGTTAGCACACTTGTGTGTCATCCCCTTGAAGTACTGAAGGATCGGTTGACTGTGTCTCCTGAGGCGTATCCTAGTTTAAGCATTGCAATCAGCAAGATTTATAAGGAGGGTGGGATTGGTGCATGCTATTCTGGTCTTTCACCTACACTGATTGGGATGCTTCCGTACAGTACTTGTTACTATTTCATGTATGAAAAAATGAAGAAATCCTACTGCCAAGCAAAGAATAAAGAGTCACTTAACCGTCCAGAGATGCTACTGGTTGGAGCTCTTGCAGGTTTTACGGCTAGCACAATCAGCTTTCCGTTGGAGGTGGCCAGGAAACGGCTGATGGTTGGAGCTTTGCAAGGTAAGTGCCCACCTCACATGGCGGCGGCACTCTCAGAAGTCATTCGAGAAGAAGGTTTGCTGGGACTCTACAGAGGGTGGGGGGCAAGCTGTTTAAAGGTCATGCCATCCTCTGGCATCACCTGGATGTTTTATGAAGCTTGGAAGGACATATTGCTTGTTCAGAGGAATTCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

368

Amino Acids

40.73

Weight (kDa)

9.23

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	678, 1102
Acc36I	ACCTGC	1 cut(s)	842
AccB7I	CCANNNNNTGG	1 cut(s)	1037
AciI	CCGC	2 cut(s)	947, 950
AclWI	GGATC	2 cut(s)	313, 624
AcoI	YGGCCR	2 cut(s)	93, 891
AcsI	RAATTY	3 cut(s)	140, 188, 1093
AcuI	CTGAAG	2 cut(s)	65, 632
AfaI	GTAC	5 cut(s)	62, 86, 609, 743, 748
AfiI	CCNNNNNNNGG	2 cut(s)	900, 1037
AgsI	TTSAA	4 cut(s)	32, 158, 520, 605
AjnI	CCWGG	3 cut(s)	533, 893, 1046
AleI	CACNNNNGTG	2 cut(s)	587, 589
Alw21I	GWGCWC	2 cut(s)	150, 847
Alw26I	GTCTC	3 cut(s)	45, 266, 636
AlwI	GGATC	2 cut(s)	313, 624
AlwNI	CAGNNNCTG	1 cut(s)	43
AoxI	GGCC	3 cut(s)	93, 505, 891
ApeKI	GCWGC	2 cut(s)	563, 566
ApoI	RAATTY	3 cut(s)	140, 188, 1093
Asp700I	GAANNNNTTC	1 cut(s)	966
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	708, 1036
AsuNHI	GCTAGC	1 cut(s)	863
AxyI	CCTNAGG	1 cut(s)	636
BaeGI	GKGCMC	1 cut(s)	935
BalI	TGGCCA	2 cut(s)	95, 893
BanII	GRGCYC	2 cut(s)	150, 847
BarI	GAAGNNNNNNTAC	2 cut(s)	770, 802
Bbv12I	GWGCWC	2 cut(s)	150, 847
BbvI	GCAGC	2 cut(s)	550, 553
BccI	CCATC	4 cut(s)	188, 284, 901, 1039
BceAI	ACGGC	2 cut(s)	876, 917
BciT130I	CCWGG	3 cut(s)	535, 895, 1048
BciVI	GTATCC	1 cut(s)	654
BcoDI	GTCTC	3 cut(s)	45, 266, 636
BfaI	CTAG	4 cut(s)	285, 309, 648, 864
BfmI	CTRYAG	1 cut(s)	994
BfuAI	ACCTGC	1 cut(s)	842
BfuI	GTATCC	1 cut(s)	654
BisI	GCNGC	4 cut(s)	564, 567, 948, 951
BlsI	GCNGC	4 cut(s)	565, 568, 949, 952
BmcAI	AGTACT	2 cut(s)	609, 748
Bme1390I	CCNGG	3 cut(s)	535, 895, 1048
BmgT120I	GGNCC	1 cut(s)	506
BmrFI	CCNGG	3 cut(s)	535, 895, 1048
BmsI	GCATC	3 cut(s)	723, 819, 1050
BmtI	GCTAGC	1 cut(s)	867
BpuEI	CTTGAG	4 cut(s)	134, 140, 178, 290
BsaI	GGTCTC	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 616, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	900, 1037
Bse1I	ACTGG	1 cut(s)	840
Bse21I	CCTNAGG	1 cut(s)	636
Bse3DI	GCAATG	3 cut(s)	249, 456, 657
BseBI	CCWGG	3 cut(s)	535, 895, 1048
BseGI	GGATG	6 cut(s)	85, 171, 595, 738, 1031, 1056
BseLI	CCNNNNNNNGG	2 cut(s)	900, 1037
BseMI	GCAATG	3 cut(s)	249, 456, 657
BseMII	CTCAG	2 cut(s)	627, 972
BseNI	ACTGG	1 cut(s)	840
BseRI	GAGGAG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	935
BseXI	GCAGC	2 cut(s)	550, 553
BseYI	CCCAGC	1 cut(s)	985
BshFI	GGCC	3 cut(s)	95, 507, 893
BsiHKAI	GWGCWC	2 cut(s)	150, 847
BsiSI	CCGG	2 cut(s)	151, 570
BslFI	GGGAC	1 cut(s)	1002
BslI	CCNNNNNNNGG	2 cut(s)	900, 1037
BsmAI	GTCTC	3 cut(s)	45, 266, 636
BsmFI	GGGAC	1 cut(s)	1002
BsnI	GGCC	3 cut(s)	95, 507, 893
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	3 cut(s)	150, 847, 935
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	305, 616
BspACI	CCGC	2 cut(s)	947, 950
BspANI	GGCC	3 cut(s)	95, 507, 893
BspCNI	CTCAG	2 cut(s)	628, 971
BspMI	ACCTGC	1 cut(s)	842
BspOI	GCTAGC	1 cut(s)	867
BspPI	GGATC	2 cut(s)	313, 624
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	3 cut(s)	249, 456, 657
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	840
BssMI	GATC	2 cut(s)	305, 616
Bst2UI	CCWGG	3 cut(s)	535, 895, 1048
Bst4CI	ACNGT	7 cut(s)	39, 65, 89, 366, 628, 746, 821
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	5 cut(s)	447, 480, 700, 865, 1012
BstDEI	CTNAG	4 cut(s)	221, 331, 636, 958
BstF5I	GGATG	6 cut(s)	85, 171, 595, 738, 1031, 1056
BstKTI	GATC	2 cut(s)	308, 619
BstMAI	GTCTC	3 cut(s)	45, 266, 636
BstMBI	GATC	2 cut(s)	305, 616
BstMWI	GCNNNNNNNGC	6 cut(s)	260, 355, 377, 513, 563, 873
BstNI	CCWGG	3 cut(s)	535, 895, 1048
BstNSI	RCATGY	1 cut(s)	702
BstSCI	CCNGG	3 cut(s)	533, 893, 1046
BstSFI	CTRYAG	1 cut(s)	994
BstSLI	GKGCMC	1 cut(s)	935
BstV1I	GCAGC	2 cut(s)	550, 553
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
Bsu36I	CCTNAGG	1 cut(s)	636
BsuI	GTATCC	1 cut(s)	654
BsuRI	GGCC	3 cut(s)	95, 507, 893
BtsCI	GGATG	6 cut(s)	85, 171, 595, 738, 1031, 1056
BtsIMutI	CAGTG	2 cut(s)	70, 722
BveI	ACCTGC	1 cut(s)	842
Cac8I	GCNNGC	5 cut(s)	447, 480, 700, 865, 1012
CaiI	CAGNNNCTG	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	5 cut(s)	61, 85, 608, 742, 747
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviAII	CATG	5 cut(s)	22, 699, 763, 943, 1027
CviQI	GTAC	5 cut(s)	61, 85, 608, 742, 747
DdeI	CTNAG	4 cut(s)	221, 331, 636, 958
DpnI	GATC	2 cut(s)	307, 618
DpnII	GATC	2 cut(s)	305, 616
DraI	TTTAAA	1 cut(s)	1020
EaeI	YGGCCR	2 cut(s)	93, 891
Ecl136II	GAGCTC	2 cut(s)	148, 845
Eco24I	GRGCYC	2 cut(s)	150, 847
Eco31I	GGTCTC	1 cut(s)	266
Eco53kI	GAGCTC	2 cut(s)	148, 845
Eco57I	CTGAAG	2 cut(s)	65, 632
Eco81I	CCTNAGG	1 cut(s)	636
EcoICRI	GAGCTC	2 cut(s)	148, 845
EcoRI	GAATTC	2 cut(s)	188, 1093
EcoRII	CCWGG	3 cut(s)	533, 893, 1046
EcoT38I	GRGCYC	2 cut(s)	150, 847
FaeI	CATG	5 cut(s)	25, 702, 766, 946, 1030
FalI	AAGNNNNNCTT	4 cut(s)	243, 275, 798, 830
FaqI	GGGAC	1 cut(s)	1002
FatI	CATG	5 cut(s)	21, 698, 762, 942, 1026
Fnu4HI	GCNGC	4 cut(s)	564, 567, 948, 951
FokI	GGATG	6 cut(s)	92, 158, 582, 745, 1018, 1063
FriOI	GRGCYC	2 cut(s)	150, 847
Fsp4HI	GCNGC	4 cut(s)	564, 567, 948, 951
FspBI	CTAG	4 cut(s)	285, 309, 648, 864
GluI	GCNGC	4 cut(s)	564, 567, 948, 951
GsaI	CCCAGC	1 cut(s)	989
HaeIII	GGCC	3 cut(s)	95, 507, 893
HapII	CCGG	2 cut(s)	151, 570
Hin1II	CATG	5 cut(s)	25, 702, 766, 946, 1030
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	2 cut(s)	514, 1062
HinfI	GANTC	6 cut(s)	32, 128, 391, 485, 809, 990
HpaII	CCGG	2 cut(s)	151, 570
HphI	GGTGA	2 cut(s)	708, 1036
Hpy166II	GTNNAC	2 cut(s)	85, 624
Hpy188I	TCNGA	5 cut(s)	45, 185, 305, 961, 1089
Hpy188III	TCNNGA	6 cut(s)	269, 280, 309, 635, 824, 971
Hpy8I	GTNNAC	2 cut(s)	85, 624
HpyAV	CCTTC	5 cut(s)	43, 118, 607, 971, 1063
HpyCH4III	ACNGT	7 cut(s)	39, 65, 89, 366, 628, 746, 821
HpyCH4V	TGCA	7 cut(s)	380, 425, 499, 662, 698, 851, 922
HpyF10VI	GCNNNNNNNGC	6 cut(s)	260, 355, 377, 513, 563, 873
HpyF3I	CTNAG	4 cut(s)	221, 331, 636, 958
Hsp92II	CATG	5 cut(s)	25, 702, 766, 946, 1030
Kzo9I	GATC	2 cut(s)	305, 616
LmnI	GCTCC	5 cut(s)	153, 227, 268, 842, 914
Lsp1109I	GCAGC	2 cut(s)	550, 553
LweI	GCATC	3 cut(s)	723, 819, 1050
MaeI	CTAG	4 cut(s)	285, 309, 648, 864
MaeIII	GTNAC	2 cut(s)	752, 810
MalI	GATC	2 cut(s)	307, 618
MboI	GATC	2 cut(s)	305, 616
MboII	GAAGA	4 cut(s)	58, 67, 790, 986
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	3 cut(s)	150, 847, 935
MlsI	TGGCCA	2 cut(s)	95, 893
MluCI	AATT	5 cut(s)	140, 188, 414, 501, 1093
MluNI	TGGCCA	2 cut(s)	95, 893
MlyI	GAGTC	2 cut(s)	818, 984
MmeI	TCCRAC	5 cut(s)	199, 283, 820, 864, 892
Mox20I	TGGCCA	2 cut(s)	95, 893
MroXI	GAANNNNTTC	1 cut(s)	966
MscI	TGGCCA	2 cut(s)	95, 893
MseI	TTAA	4 cut(s)	441, 653, 816, 1019
MslI	CAYNNNNRTG	4 cut(s)	433, 587, 589, 1049
Msp20I	TGGCCA	2 cut(s)	95, 893
MspI	CCGG	2 cut(s)	151, 570
MspR9I	CCNGG	3 cut(s)	535, 895, 1048
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	3 cut(s)	535, 895, 1048
MwoI	GCNNNNNNNGC	6 cut(s)	260, 355, 377, 513, 563, 873
NdeII	GATC	2 cut(s)	305, 616
NheI	GCTAGC	1 cut(s)	863
NlaIII	CATG	5 cut(s)	25, 702, 766, 946, 1030
NmuCI	GTSAC	1 cut(s)	810
NspI	RCATGY	1 cut(s)	702
OliI	CACNNNNGTG	2 cut(s)	587, 589
PaeI	GCATGC	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	966
PfeI	GAWTC	4 cut(s)	32, 128, 391, 485
PflFI	GACNNNGTC	1 cut(s)	628
PflMI	CCANNNNNTGG	1 cut(s)	1037
PfoI	TCCNGGA	1 cut(s)	533
PkrI	GCNGC	4 cut(s)	565, 568, 949, 952
PleI	GAGTC	2 cut(s)	817, 984
PpsI	GAGTC	2 cut(s)	817, 984
PsiI	TTATAA	2 cut(s)	678, 1102
Psp124BI	GAGCTC	2 cut(s)	150, 847
Psp6I	CCWGG	3 cut(s)	533, 893, 1046
PspFI	CCCAGC	1 cut(s)	985
PspGI	CCWGG	3 cut(s)	533, 893, 1046
PspPI	GGNCC	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	305
PsyI	GACNNNGTC	1 cut(s)	628
RsaI	GTAC	5 cut(s)	62, 86, 609, 743, 748
RsaNI	GTAC	5 cut(s)	61, 85, 608, 742, 747
RseI	CAYNNNNRTG	4 cut(s)	433, 587, 589, 1049
SacI	GAGCTC	2 cut(s)	150, 847
SaqAI	TTAA	4 cut(s)	441, 653, 816, 1019
SatI	GCNGC	4 cut(s)	564, 567, 948, 951
Sau3AI	GATC	2 cut(s)	305, 616
Sau96I	GGNCC	1 cut(s)	506
ScaI	AGTACT	2 cut(s)	609, 748
SchI	GAGTC	2 cut(s)	818, 984
ScrFI	CCNGG	3 cut(s)	535, 895, 1048
SduI	GDGCHC	3 cut(s)	150, 847, 935
SfaNI	GCATC	3 cut(s)	723, 819, 1050
SfcI	CTRYAG	1 cut(s)	994
SmiMI	CAYNNNNRTG	4 cut(s)	433, 587, 589, 1049
SmlI	CTYRAG	4 cut(s)	113, 119, 193, 269
SmoI	CTYRAG	4 cut(s)	113, 119, 193, 269
SphI	GCATGC	1 cut(s)	702
Sse9I	AATT	5 cut(s)	140, 188, 414, 501, 1093
SsiI	CCGC	2 cut(s)	947, 950
SspMI	CTAG	4 cut(s)	285, 309, 648, 864
SstI	GAGCTC	2 cut(s)	150, 847
StyD4I	CCNGG	3 cut(s)	533, 893, 1046
TaaI	ACNGT	7 cut(s)	39, 65, 89, 366, 628, 746, 821
TaqI	TCGA	2 cut(s)	144, 970
TasI	AATT	5 cut(s)	140, 188, 414, 501, 1093
TatI	WGTACW	4 cut(s)	60, 84, 607, 746
TauI	GCSGC	2 cut(s)	950, 953
TfiI	GAWTC	4 cut(s)	32, 128, 391, 485
Tru1I	TTAA	4 cut(s)	441, 653, 816, 1019
Tru9I	TTAA	4 cut(s)	441, 653, 816, 1019
TscAI	CASTG	2 cut(s)	70, 729
TseFI	GTSAC	1 cut(s)	810
TseI	GCWGC	2 cut(s)	563, 566
Tsp45I	GTSAC	1 cut(s)	810
TspDTI	ATGAA	4 cut(s)	751, 783, 791, 1074
TspGWI	ACGGA	2 cut(s)	729, 870
TspRI	CASTG	2 cut(s)	70, 729
Tth111I	GACNNNGTC	1 cut(s)	628
Van91I	CCANNNNNTGG	1 cut(s)	1037
XapI	RAATTY	3 cut(s)	140, 188, 1093
XbaI	TCTAGA	1 cut(s)	308
XceI	RCATGY	1 cut(s)	702
XmnI	GAANNNNTTC	1 cut(s)	966
XspI	CTAG	4 cut(s)	285, 309, 648, 864
ZrmI	AGTACT	2 cut(s)	609, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.