Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Forward (+)

28956718 .. 28961908

Gene Structure 5191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g36880.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCCCCAAAACCCCACTCCCTCTCCCTCTCTCAGTCTATGAAGAAGGAGAAGAAGTACAATGGGGTATTTGGGGACATGTACTCCACTGTGGCCATTATTCCAAAAGACCTTGAGCTTGATAAGGATCCCCACCCATCACCATTTCAGCTTCACTTCCAGTTTCCTGACCTCACCCAACCCATCAGAGGATTCTTGAGGACGAGAGAAGTTGGAGAGTTCCTTAGTGGGGCTTTAGCAGGGGCGATGACCAAAGCTGTTCTTGCGCCGCTTGAGACCATCAGGACTAGAATGATAGTTGGTGTTGGATCTAGAAACATCTCGGGCAGTTTCTTAGAGGTCATTGAGAAGCAGGGTTGGCAAGGACTATGGGCTGGAAATGCAGTCAATATGATCCGCATAGTTCCTACCCAGGCAATTGAGTTTGGAACGTTTGAGTTTGTTAAACGAGCAATGACGTCGGCACAAGAGAAGTGGAAGCAGACTGAAGGCCCAAAGGTGCAAATTGGCCCTGTAAGCTTGGACTTCTCTATCTCCTGGATTTCTCCTGTTGCTGTGGCTGGTGCTGCTGCTGGAATTGCTAGCACACTTGTGTGTCATCCCCTTGAAGTTTTAAAGGATCGGCTTACTGTCTGTCCTGAGGCATATCCTAGTATAGGTGTTGCAATCTGTAAGATTTACAAGGAAGGTGGTATTGGTTCATGCTATTCGGGTCTTTCACCTACACTGATTGGGATGCTTCCCTACAGTACATGCTATTATTTCATGTATGAGAAAATCAAGAAATCATACTGCCTAACAAAGAAAAAAGAGTCTCTAAGCCGTCCAGAGATGTTACTGGTTGGAGCTCTTGCAGGTTTTACAGCCAGCACAATCAGCTTTCCATTGGAGGTGGCCAGGAAACGGCTCATGGTTGGAGCTATGCAGGGTAAGTGCCCGCCCCATATGGCGGCTGCACTGTCAGAAGTGATACGCGAGGAAGGTTTATTGGGACTATACAGAGGCTGGGGTGCAAGCTGTTTAAAGGTCATGCCTTCGTCTGGCATCACCTGGATGTTTTATGAAGCGTGGAAAGACATATTGCTTGTTCAGAGACATCATCCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

370

Amino Acids

40.58

Weight (kDa)

9.19

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	73 - 154	7.3e-20	Mitochondrial carrier protein
Mito_carr	PF00153	186 - 265	7.1e-18	Mitochondrial carrier protein
Mito_carr	PF00153	277 - 363	3.4e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1108
AatII	GACGTC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	845
AccII	CGCG	1 cut(s)	975
AciI	CCGC	4 cut(s)	269, 397, 938, 950
AclI	AACGTT	1 cut(s)	431
AclWI	GGATC	5 cut(s)	122, 135, 316, 388, 627
AcoI	YGGCCR	2 cut(s)	93, 894
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	458
AfaI	GTAC	3 cut(s)	59, 83, 751
AfiI	CCNNNNNNNGG	6 cut(s)	188, 229, 656, 903, 949, 1040
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	608
AjnI	CCWGG	4 cut(s)	411, 536, 896, 1049
AjuI	GAANNNNNNNTTGG	2 cut(s)	678, 710
AleI	CACNNNNGTG	2 cut(s)	590, 592
AluBI	AGCT	8 cut(s)	118, 151, 257, 519, 848, 879, 920, 1017
AluI	AGCT	8 cut(s)	118, 151, 257, 519, 848, 879, 920, 1017
Alw21I	GWGCWC	1 cut(s)	850
Alw26I	GTCTC	3 cut(s)	269, 819, 1087
AlwI	GGATC	5 cut(s)	122, 135, 316, 388, 627
AlwNI	CAGNNNCTG	1 cut(s)	1005
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	4 cut(s)	93, 490, 508, 894
ApeKI	GCWGC	3 cut(s)	566, 569, 953
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	491, 509
AsuHPI	GGTGA	4 cut(s)	132, 166, 711, 1039
AsuNHI	GCTAGC	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	1 cut(s)	938
BalI	TGGCCA	2 cut(s)	95, 896
BamHI	GGATCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	850
Bbv12I	GWGCWC	1 cut(s)	850
BbvI	GCAGC	3 cut(s)	553, 556, 940
BccI	CCATC	3 cut(s)	145, 191, 287
BceAI	ACGGC	2 cut(s)	807, 920
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BciT130I	CCWGG	4 cut(s)	413, 538, 898, 1051
BcoDI	GTCTC	3 cut(s)	269, 819, 1087
BfaI	CTAG	4 cut(s)	288, 312, 582, 651
BfmI	CTRYAG	1 cut(s)	745
BfuAI	ACCTGC	1 cut(s)	845
BisI	GCNGC	5 cut(s)	269, 567, 570, 951, 954
BlsI	GCNGC	5 cut(s)	270, 568, 571, 952, 955
Bme1390I	CCNGG	4 cut(s)	413, 538, 898, 1051
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	491, 509
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	4 cut(s)	413, 538, 898, 1051
BmsI	GCATC	2 cut(s)	726, 1053
BmtI	GCTAGC	1 cut(s)	585
BpuEI	CTTGAG	3 cut(s)	134, 217, 293
BsaBI	GATNNNNATC	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	6 cut(s)	8, 38, 41, 68, 71, 98
Bsc4I	CCNNNNNNNGG	6 cut(s)	188, 229, 656, 903, 949, 1040
Bse1I	ACTGG	2 cut(s)	160, 843
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	4 cut(s)	413, 538, 898, 1051
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	4 cut(s)	598, 741, 1059, 1099
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	6 cut(s)	188, 229, 656, 903, 949, 1040
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	47, 630
BseNI	ACTGG	2 cut(s)	160, 843
BseSI	GKGCMC	1 cut(s)	938
BseXI	GCAGC	3 cut(s)	553, 556, 940
BseYI	CCCAGC	1 cut(s)	1005
BsgI	GTGCAG	1 cut(s)	939
Bsh1236I	CGCG	1 cut(s)	975
BshFI	GGCC	4 cut(s)	95, 492, 510, 896
BsiHKAI	GWGCWC	1 cut(s)	850
BsiHKCI	CYCGRG	1 cut(s)	322
BslFI	GGGAC	2 cut(s)	89, 1005
BslI	CCNNNNNNNGG	6 cut(s)	188, 229, 656, 903, 949, 1040
BsmAI	GTCTC	3 cut(s)	269, 819, 1087
BsmFI	GGGAC	2 cut(s)	89, 1005
BsnI	GGCC	4 cut(s)	95, 492, 510, 896
Bso31I	GGTCTC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	850, 938
Bsp143I	GATC	4 cut(s)	127, 308, 393, 619
BspACI	CCGC	4 cut(s)	269, 397, 938, 950
BspANI	GGCC	4 cut(s)	95, 492, 510, 896
BspCNI	CTCAG	2 cut(s)	46, 631
BspFNI	CGCG	1 cut(s)	975
BspLI	GGNNCC	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	845
BspOI	GCTAGC	1 cut(s)	585
BspPI	GGATC	5 cut(s)	122, 135, 316, 388, 627
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	160, 843
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	4 cut(s)	127, 308, 393, 619
BssNI	GRCGYC	1 cut(s)	458
Bst2UI	CCWGG	4 cut(s)	413, 538, 898, 1051
Bst4CI	ACNGT	4 cut(s)	91, 631, 749, 960
BstACI	GRCGYC	1 cut(s)	458
BstC8I	GCNNGC	4 cut(s)	583, 868, 938, 1015
BstDEI	CTNAG	5 cut(s)	33, 224, 334, 639, 818
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstF5I	GGATG	4 cut(s)	598, 741, 1059, 1099
BstFNI	CGCG	1 cut(s)	975
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	4 cut(s)	130, 311, 396, 622
BstMAI	GTCTC	3 cut(s)	269, 819, 1087
BstMBI	GATC	4 cut(s)	127, 308, 393, 619
BstMWI	GCNNNNNNNGC	7 cut(s)	263, 358, 380, 516, 566, 578, 876
BstNI	CCWGG	4 cut(s)	413, 538, 898, 1051
BstNSI	RCATGY	2 cut(s)	82, 756
BstSCI	CCNGG	4 cut(s)	411, 536, 896, 1049
BstSFI	CTRYAG	1 cut(s)	745
BstSLI	GKGCMC	1 cut(s)	938
BstUI	CGCG	1 cut(s)	975
BstV1I	GCAGC	3 cut(s)	553, 556, 940
BstX2I	RGATCY	2 cut(s)	127, 308
BstYI	RGATCY	2 cut(s)	127, 308
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	4 cut(s)	95, 492, 510, 896
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	4 cut(s)	598, 741, 1059, 1099
BtsIMutI	CAGTG	3 cut(s)	87, 725, 956
BveI	ACCTGC	1 cut(s)	845
Cac8I	GCNNGC	4 cut(s)	583, 868, 938, 1015
CaiI	CAGNNNCTG	1 cut(s)	1005
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	491, 509
Csp6I	GTAC	3 cut(s)	58, 82, 750
CspCI	CAANNNNNGTGG	4 cut(s)	455, 490, 670, 705
CviAII	CATG	6 cut(s)	79, 702, 753, 766, 910, 1030
CviQI	GTAC	3 cut(s)	58, 82, 750
DdeI	CTNAG	5 cut(s)	33, 224, 334, 639, 818
DpnI	GATC	4 cut(s)	129, 310, 395, 621
DpnII	GATC	4 cut(s)	127, 308, 393, 619
DraI	TTTAAA	2 cut(s)	615, 1023
EaeI	YGGCCR	2 cut(s)	93, 894
Ecl136II	GAGCTC	1 cut(s)	848
Eco24I	GRGCYC	1 cut(s)	850
Eco31I	GGTCTC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	848
Eco57I	CTGAAG	1 cut(s)	507
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	848
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoRII	CCWGG	4 cut(s)	411, 536, 896, 1049
EcoT38I	GRGCYC	1 cut(s)	850
FaeI	CATG	6 cut(s)	82, 705, 756, 769, 913, 1033
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	2 cut(s)	89, 1005
FatI	CATG	6 cut(s)	78, 701, 752, 765, 909, 1029
FauI	CCCGC	1 cut(s)	945
FauNDI	CATATG	1 cut(s)	945
Fnu4HI	GCNGC	5 cut(s)	269, 567, 570, 951, 954
FokI	GGATG	4 cut(s)	585, 748, 1066, 1086
FriOI	GRGCYC	1 cut(s)	850
Fsp4HI	GCNGC	5 cut(s)	269, 567, 570, 951, 954
FspBI	CTAG	4 cut(s)	288, 312, 582, 651
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	5 cut(s)	269, 567, 570, 951, 954
GsaI	CCCAGC	1 cut(s)	1009
HaeIII	GGCC	4 cut(s)	95, 492, 510, 896
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	6 cut(s)	82, 705, 756, 769, 913, 1033
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	2 cut(s)	192, 812
HphI	GGTGA	4 cut(s)	132, 166, 711, 1039
Hpy188I	TCNGA	3 cut(s)	188, 964, 1092
Hpy188III	TCNNGA	7 cut(s)	167, 196, 283, 312, 638, 781, 827
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	5 cut(s)	40, 482, 680, 974, 1044
HpyCH4III	ACNGT	4 cut(s)	91, 631, 749, 960
HpyCH4IV	ACGT	2 cut(s)	431, 458
HpyCH4V	TGCA	7 cut(s)	383, 502, 665, 854, 925, 956, 1013
HpyF10VI	GCNNNNNNNGC	7 cut(s)	263, 358, 380, 516, 566, 578, 876
HpyF3I	CTNAG	5 cut(s)	33, 224, 334, 639, 818
HpySE526I	ACGT	2 cut(s)	431, 458
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	6 cut(s)	82, 705, 756, 769, 913, 1033
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	4 cut(s)	127, 308, 393, 619
LmnI	GCTCC	2 cut(s)	845, 917
Lsp1109I	GCAGC	3 cut(s)	553, 556, 940
LweI	GCATC	2 cut(s)	726, 1053
MaeI	CTAG	4 cut(s)	288, 312, 582, 651
MaeII	ACGT	2 cut(s)	431, 458
MaeIII	GTNAC	1 cut(s)	834
MalI	GATC	4 cut(s)	129, 310, 395, 621
MboI	GATC	4 cut(s)	127, 308, 393, 619
MboII	GAAGA	2 cut(s)	55, 64
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	2 cut(s)	127, 308
MhlI	GDGCHC	2 cut(s)	850, 938
MlsI	TGGCCA	2 cut(s)	95, 896
MluCI	AATT	3 cut(s)	417, 504, 576
MluNI	TGGCCA	2 cut(s)	95, 896
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	4 cut(s)	193, 286, 823, 895
Mox20I	TGGCCA	2 cut(s)	95, 896
MscI	TGGCCA	2 cut(s)	95, 896
MseI	TTAA	3 cut(s)	444, 614, 1022
MslI	CAYNNNNRTG	3 cut(s)	590, 592, 1052
Msp20I	TGGCCA	2 cut(s)	95, 896
MspR9I	CCNGG	4 cut(s)	413, 538, 898, 1051
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	4 cut(s)	413, 538, 898, 1051
MvnI	CGCG	1 cut(s)	975
MwoI	GCNNNNNNNGC	7 cut(s)	263, 358, 380, 516, 566, 578, 876
NdeI	CATATG	1 cut(s)	945
NdeII	GATC	4 cut(s)	127, 308, 393, 619
NheI	GCTAGC	1 cut(s)	581
NlaIII	CATG	6 cut(s)	82, 705, 756, 769, 913, 1033
NlaIV	GGNNCC	1 cut(s)	129
NspI	RCATGY	2 cut(s)	82, 756
OliI	CACNNNNGTG	2 cut(s)	590, 592
PciI	ACATGT	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	192
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	5 cut(s)	270, 568, 571, 952, 955
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
PscI	ACATGT	1 cut(s)	78
PsiI	TTATAA	1 cut(s)	1108
Psp124BI	GAGCTC	1 cut(s)	850
Psp1406I	AACGTT	1 cut(s)	431
Psp6I	CCWGG	4 cut(s)	411, 536, 896, 1049
PspFI	CCCAGC	1 cut(s)	1005
PspGI	CCWGG	4 cut(s)	411, 536, 896, 1049
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	491, 509
PstNI	CAGNNNCTG	1 cut(s)	1005
PsuI	RGATCY	2 cut(s)	127, 308
RsaI	GTAC	3 cut(s)	59, 83, 751
RsaNI	GTAC	3 cut(s)	58, 82, 750
RseI	CAYNNNNRTG	3 cut(s)	590, 592, 1052
SacI	GAGCTC	1 cut(s)	850
SaqAI	TTAA	3 cut(s)	444, 614, 1022
SatI	GCNGC	5 cut(s)	269, 567, 570, 951, 954
Sau3AI	GATC	4 cut(s)	127, 308, 393, 619
Sau96I	GGNCC	2 cut(s)	491, 509
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	4 cut(s)	413, 538, 898, 1051
SduI	GDGCHC	2 cut(s)	850, 938
SfaNI	GCATC	2 cut(s)	726, 1053
SfcI	CTRYAG	1 cut(s)	745
SmiMI	CAYNNNNRTG	3 cut(s)	590, 592, 1052
SmlI	CTYRAG	3 cut(s)	113, 196, 272
SmoI	CTYRAG	3 cut(s)	113, 196, 272
Sse9I	AATT	3 cut(s)	417, 504, 576
SsiI	CCGC	4 cut(s)	269, 397, 938, 950
SspMI	CTAG	4 cut(s)	288, 312, 582, 651
SstI	GAGCTC	1 cut(s)	850
StyD4I	CCNGG	4 cut(s)	411, 536, 896, 1049
TaaI	ACNGT	4 cut(s)	91, 631, 749, 960
TaiI	ACGT	2 cut(s)	434, 461
TasI	AATT	3 cut(s)	417, 504, 576
TatI	WGTACW	3 cut(s)	57, 81, 749
TauI	GCSGC	2 cut(s)	271, 953
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	3 cut(s)	444, 614, 1022
Tru9I	TTAA	3 cut(s)	444, 614, 1022
TscAI	CASTG	3 cut(s)	94, 732, 963
TseI	GCWGC	3 cut(s)	566, 569, 953
TspDTI	ATGAA	4 cut(s)	56, 690, 754, 1077
TspRI	CASTG	3 cut(s)	94, 732, 963
XagI	CCTNNNNNAGG	1 cut(s)	654
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	2 cut(s)	82, 756
XspI	CTAG	4 cut(s)	288, 312, 582, 651
ZraI	GACGTC	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.