Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Reverse (-)

6386851 .. 6390275

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08330.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCCCCGAAACCCCACTCTCTCTCCCTCTCTCAGTCTCTGAAGAAGGAGAAGAAGTACAGTGGTGGTGGGGTTTTTGGGGATGTGTACAGTATGGCCATACTTCCCAAAGAGCTTGAGCTCGAGAAGGAGGCTGCCCACCCGAAATTCGAGCTCCGATTTCAGCTCCCTGACCTCTCCCAACCCCTCAGAGATTTCTCGAGGACAAGGGAAGTTAGAGAGTTCCTAAGCGGGGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGACCAGAATGGTAGTTGGTGTCGGATCTAGACACATTTCTGGCAGTTTCTTAGAGGTCATTGAGAAGCAGGGATGGCAAGGACTGTGGGCTGGAAATGCGGTCAACATGCTTCGCATAATCCCCACACAAGCTATTGAGTTTGGAACATTTGAGTGTGTTAAACGAGCAATGACATCAACACAAGAAAAGTGGAAGCAGGGTGAATCCCCAAAGGTGCAAATTGGTCCTGTTACCTTGAACTTCTCTATCTCCTGGATTTCCCCTGTTGCTGTGGCCGGTGCTGCTGCCGGAGTTGTTAGCACACTTGTATGTCATCCCCTTGAAGTTCTAAAGGATCGGCTGACTGTGTCTCCTGAGGCGTATCCCAGTTTAAGCATTGCAATCAGCAAGATTTATAAGGAGGGTGGGATTGCTGCATGCTATTCTGGTCTTTCACCTACACTTATTGGGATGCTTCCTTACAGTACATGTTACTATTTCATGTATGAGAAAGTGAAGAAATCCTACTGCCAAGCAAAGAATAAAGAGTCTCTGAACCGTCCTGAGATGCTACTGGTTGGAGCACTTGCAGGTTTTACGGCTAGTACAATCAGCTTTCCATTGGAGGTGGCCAGGAAACGGCTGATGGTTGGAGCTTTGCAAGGCAAGTGCCCACCACACATGGCGGCAGCACTTTCAGAAGTCATCCGGGAAGAAGGTTTGCGGGGACTATACAGAGGGTGGGGTGCAAGCTGCTTGAAGGTCATGCCATCTTCCGGCATCACCTGGATGTTTTACGAAGCTTGGAAGGACATATTGCTTGTTCAGGGACATACCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

370

Amino Acids

40.49

Weight (kDa)

9.3

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	684, 1108
Acc36I	ACCTGC	1 cut(s)	848
AciI	CCGC	4 cut(s)	231, 386, 953, 991
AclWI	GGATC	2 cut(s)	319, 630
AcoI	YGGCCR	3 cut(s)	96, 561, 897
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	4 cut(s)	59, 89, 754, 874
AfiI	CCNNNNNNNGG	3 cut(s)	232, 906, 1043
AflIII	ACRYGT	1 cut(s)	755
AgsI	TTSAA	3 cut(s)	526, 611, 1027
AjnI	CCWGG	3 cut(s)	539, 899, 1052
Alw21I	GWGCWC	3 cut(s)	123, 156, 853
Alw26I	GTCTC	4 cut(s)	42, 272, 642, 822
AlwI	GGATC	2 cut(s)	319, 630
AlwNI	CAGNNNCTG	1 cut(s)	40
Ama87I	CYCGRG	2 cut(s)	122, 199
AoxI	GGCC	3 cut(s)	96, 561, 897
ApeKI	GCWGC	6 cut(s)	134, 569, 572, 701, 956, 1020
ApoI	RAATTY	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	288, 512
AsuC2I	CCSGG	1 cut(s)	977
AsuHPI	GGTGA	3 cut(s)	500, 714, 1042
AvaI	CYCGRG	2 cut(s)	122, 199
AvaII	GGWCC	2 cut(s)	288, 512
AxyI	CCTNAGG	1 cut(s)	642
BaeGI	GKGCMC	1 cut(s)	941
BalI	TGGCCA	2 cut(s)	98, 899
BanII	GRGCYC	2 cut(s)	123, 156
BarI	GAAGNNNNNNTAC	2 cut(s)	776, 808
Bbv12I	GWGCWC	3 cut(s)	123, 156, 853
BbvI	GCAGC	6 cut(s)	121, 556, 559, 688, 968, 1007
BccI	CCATC	4 cut(s)	290, 354, 907, 1045
BceAI	ACGGC	2 cut(s)	882, 923
BciT130I	CCWGG	3 cut(s)	541, 901, 1054
BciVI	GTATCC	1 cut(s)	660
BcnI	CCSGG	1 cut(s)	977
BcoDI	GTCTC	4 cut(s)	42, 272, 642, 822
BfaI	CTAG	2 cut(s)	315, 870
BfuAI	ACCTGC	1 cut(s)	848
BfuI	GTATCC	1 cut(s)	660
BisI	GCNGC	7 cut(s)	135, 570, 573, 702, 954, 957, 1021
BlsI	GCNGC	7 cut(s)	136, 571, 574, 703, 955, 958, 1022
Bme1390I	CCNGG	4 cut(s)	541, 901, 977, 1054
Bme18I	GGWCC	2 cut(s)	288, 512
BmeT110I	CYCGRG	2 cut(s)	122, 199
BmgT120I	GGNCC	2 cut(s)	288, 512
BmrFI	CCNGG	4 cut(s)	541, 901, 977, 1054
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	3 cut(s)	729, 825, 1056
BmuI	ACTGGG	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	2 cut(s)	137, 296
BpuMI	CCSGG	1 cut(s)	977
BsaI	GGTCTC	1 cut(s)	272
BsaXI	ACNNNNNCTCC	6 cut(s)	8, 38, 41, 71, 622, 652
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 906, 1043
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	2 cut(s)	654, 846
Bse21I	CCTNAGG	1 cut(s)	642
Bse3DI	GCAATG	3 cut(s)	255, 462, 663
BseBI	CCWGG	3 cut(s)	541, 901, 1054
BseGI	GGATG	6 cut(s)	88, 365, 601, 744, 972, 1062
BseLI	CCNNNNNNNGG	3 cut(s)	232, 906, 1043
BseMI	GCAATG	3 cut(s)	255, 462, 663
BseMII	CTCAG	4 cut(s)	47, 202, 633, 822
BseNI	ACTGG	2 cut(s)	654, 846
BseRI	GAGGAG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	941
BseXI	GCAGC	6 cut(s)	121, 556, 559, 688, 968, 1007
BshFI	GGCC	3 cut(s)	98, 563, 899
BsiHKAI	GWGCWC	3 cut(s)	123, 156, 853
BsiHKCI	CYCGRG	2 cut(s)	122, 199
BsiSI	CCGG	4 cut(s)	564, 576, 976, 1044
BslFI	GGGAC	1 cut(s)	1008
BslI	CCNNNNNNNGG	3 cut(s)	232, 906, 1043
BsmAI	GTCTC	4 cut(s)	42, 272, 642, 822
BsmFI	GGGAC	1 cut(s)	1008
BsnI	GGCC	3 cut(s)	98, 563, 899
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	2 cut(s)	122, 199
Bsp1286I	GDGCHC	4 cut(s)	123, 156, 853, 941
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	311, 622
BspACI	CCGC	4 cut(s)	231, 386, 953, 991
BspANI	GGCC	3 cut(s)	98, 563, 899
BspCNI	CTCAG	4 cut(s)	46, 201, 634, 823
BspMI	ACCTGC	1 cut(s)	848
BspPI	GGATC	2 cut(s)	319, 630
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	3 cut(s)	255, 462, 663
BsrFI	RCCGGY	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	654, 846
BssAI	RCCGGY	1 cut(s)	563
BssMI	GATC	2 cut(s)	311, 622
Bst2UI	CCWGG	3 cut(s)	541, 901, 1054
Bst4CI	ACNGT	6 cut(s)	62, 92, 372, 634, 752, 827
BstAUI	TGTACA	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	706, 1018
BstDEI	CTNAG	6 cut(s)	33, 188, 227, 337, 642, 831
BstF5I	GGATG	6 cut(s)	88, 365, 601, 744, 972, 1062
BstKTI	GATC	2 cut(s)	314, 625
BstMAI	GTCTC	4 cut(s)	42, 272, 642, 822
BstMBI	GATC	2 cut(s)	311, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 361, 383, 569
BstNI	CCWGG	3 cut(s)	541, 901, 1054
BstNSI	RCATGY	3 cut(s)	397, 708, 759
BstSCI	CCNGG	4 cut(s)	539, 899, 975, 1052
BstSLI	GKGCMC	1 cut(s)	941
BstV1I	GCAGC	6 cut(s)	121, 556, 559, 688, 968, 1007
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
Bsu36I	CCTNAGG	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	3 cut(s)	98, 563, 899
BtsCI	GGATG	6 cut(s)	88, 365, 601, 744, 972, 1062
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	848
Cac8I	GCNNGC	2 cut(s)	706, 1018
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	2 cut(s)	288, 512
Csp6I	GTAC	4 cut(s)	58, 88, 753, 873
CspCI	CAANNNNNGTGG	4 cut(s)	353, 388, 458, 493
CviAII	CATG	6 cut(s)	394, 705, 756, 769, 949, 1033
CviQI	GTAC	4 cut(s)	58, 88, 753, 873
DdeI	CTNAG	6 cut(s)	33, 188, 227, 337, 642, 831
DpnI	GATC	2 cut(s)	313, 624
DpnII	GATC	2 cut(s)	311, 622
EaeI	YGGCCR	3 cut(s)	96, 561, 897
Ecl136II	GAGCTC	2 cut(s)	121, 154
Eco24I	GRGCYC	2 cut(s)	123, 156
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	288, 512
Eco53kI	GAGCTC	2 cut(s)	121, 154
Eco57I	CTGAAG	1 cut(s)	62
Eco81I	CCTNAGG	1 cut(s)	642
Eco88I	CYCGRG	2 cut(s)	122, 199
EcoICRI	GAGCTC	2 cut(s)	121, 154
EcoRII	CCWGG	3 cut(s)	539, 899, 1052
EcoT38I	GRGCYC	2 cut(s)	123, 156
FaeI	CATG	6 cut(s)	397, 708, 759, 772, 952, 1036
FalI	AAGNNNNNCTT	4 cut(s)	220, 252, 249, 281
FaqI	GGGAC	1 cut(s)	1008
FatI	CATG	6 cut(s)	393, 704, 755, 768, 948, 1032
FauI	CCCGC	2 cut(s)	224, 984
Fnu4HI	GCNGC	7 cut(s)	135, 570, 573, 702, 954, 957, 1021
FokI	GGATG	6 cut(s)	95, 372, 588, 751, 959, 1069
FriOI	GRGCYC	2 cut(s)	123, 156
Fsp4HI	GCNGC	7 cut(s)	135, 570, 573, 702, 954, 957, 1021
FspBI	CTAG	2 cut(s)	315, 870
GluI	GCNGC	7 cut(s)	135, 570, 573, 702, 954, 957, 1021
HaeIII	GGCC	3 cut(s)	98, 563, 899
HapII	CCGG	4 cut(s)	564, 576, 976, 1044
Hin1II	CATG	6 cut(s)	397, 708, 759, 772, 952, 1036
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	1068
HinfI	GANTC	2 cut(s)	491, 815
HpaII	CCGG	4 cut(s)	564, 576, 976, 1044
HphI	GGTGA	3 cut(s)	500, 714, 1042
Hpy166II	GTNNAC	2 cut(s)	88, 391
Hpy188I	TCNGA	6 cut(s)	42, 158, 191, 311, 822, 967
Hpy188III	TCNNGA	7 cut(s)	124, 199, 275, 286, 315, 641, 830
Hpy8I	GTNNAC	2 cut(s)	88, 391
HpyAV	CCTTC	5 cut(s)	40, 121, 977, 1021, 1069
HpyCH4III	ACNGT	6 cut(s)	62, 92, 372, 634, 752, 827
HpyCH4V	TGCA	6 cut(s)	505, 668, 704, 857, 928, 1016
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 361, 383, 569
HpyF3I	CTNAG	6 cut(s)	33, 188, 227, 337, 642, 831
Hsp92II	CATG	6 cut(s)	397, 708, 759, 772, 952, 1036
Kzo9I	GATC	2 cut(s)	311, 622
LmnI	GCTCC	5 cut(s)	159, 171, 274, 848, 920
Lsp1109I	GCAGC	6 cut(s)	121, 556, 559, 688, 968, 1007
LweI	GCATC	3 cut(s)	729, 825, 1056
MaeI	CTAG	2 cut(s)	315, 870
MaeIII	GTNAC	2 cut(s)	517, 758
MalI	GATC	2 cut(s)	313, 624
MboI	GATC	2 cut(s)	311, 622
MboII	GAAGA	5 cut(s)	55, 64, 796, 992, 1032
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	4 cut(s)	123, 156, 853, 941
MlsI	TGGCCA	2 cut(s)	98, 899
MluCI	AATT	2 cut(s)	146, 507
MluNI	TGGCCA	2 cut(s)	98, 899
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	3 cut(s)	289, 826, 898
Mox20I	TGGCCA	2 cut(s)	98, 899
MscI	TGGCCA	2 cut(s)	98, 899
MseI	TTAA	2 cut(s)	447, 659
MslI	CAYNNNNRTG	3 cut(s)	439, 595, 1055
Msp20I	TGGCCA	2 cut(s)	98, 899
MspI	CCGG	4 cut(s)	564, 576, 976, 1044
MspR9I	CCNGG	4 cut(s)	541, 901, 977, 1054
MvaI	CCWGG	3 cut(s)	541, 901, 1054
MwoI	GCNNNNNNNGC	4 cut(s)	266, 361, 383, 569
NciI	CCSGG	1 cut(s)	977
NdeII	GATC	2 cut(s)	311, 622
NlaIII	CATG	6 cut(s)	397, 708, 759, 772, 952, 1036
NspI	RCATGY	3 cut(s)	397, 708, 759
PaeI	GCATGC	1 cut(s)	708
PaeR7I	CTCGAG	2 cut(s)	122, 199
PciI	ACATGT	1 cut(s)	755
PfeI	GAWTC	1 cut(s)	491
PflFI	GACNNNGTC	1 cut(s)	634
PfoI	TCCNGGA	2 cut(s)	539, 975
PkrI	GCNGC	7 cut(s)	136, 571, 574, 703, 955, 958, 1022
PleI	GAGTC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	823
PscI	ACATGT	1 cut(s)	755
PsiI	TTATAA	2 cut(s)	684, 1108
Psp124BI	GAGCTC	2 cut(s)	123, 156
Psp6I	CCWGG	3 cut(s)	539, 899, 1052
PspGI	CCWGG	3 cut(s)	539, 899, 1052
PspPI	GGNCC	2 cut(s)	288, 512
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	311
PsyI	GACNNNGTC	1 cut(s)	634
RsaI	GTAC	4 cut(s)	59, 89, 754, 874
RsaNI	GTAC	4 cut(s)	58, 88, 753, 873
RseI	CAYNNNNRTG	3 cut(s)	439, 595, 1055
SacI	GAGCTC	2 cut(s)	123, 156
SaqAI	TTAA	2 cut(s)	447, 659
SatI	GCNGC	7 cut(s)	135, 570, 573, 702, 954, 957, 1021
Sau3AI	GATC	2 cut(s)	311, 622
Sau96I	GGNCC	2 cut(s)	288, 512
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	4 cut(s)	541, 901, 977, 1054
SduI	GDGCHC	4 cut(s)	123, 156, 853, 941
SfaNI	GCATC	3 cut(s)	729, 825, 1056
Sfr274I	CTCGAG	2 cut(s)	122, 199
SinI	GGWCC	2 cut(s)	288, 512
SlaI	CTCGAG	2 cut(s)	122, 199
SmiMI	CAYNNNNRTG	3 cut(s)	439, 595, 1055
SmlI	CTYRAG	4 cut(s)	116, 122, 199, 275
SmoI	CTYRAG	4 cut(s)	116, 122, 199, 275
SphI	GCATGC	1 cut(s)	708
Sse9I	AATT	2 cut(s)	146, 507
SsiI	CCGC	4 cut(s)	231, 386, 953, 991
SspMI	CTAG	2 cut(s)	315, 870
SstI	GAGCTC	2 cut(s)	123, 156
StyD4I	CCNGG	4 cut(s)	539, 899, 975, 1052
TaaI	ACNGT	6 cut(s)	62, 92, 372, 634, 752, 827
TaqI	TCGA	3 cut(s)	123, 150, 200
TasI	AATT	2 cut(s)	146, 507
TatI	WGTACW	4 cut(s)	57, 87, 752, 872
TauI	GCSGC	1 cut(s)	956
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	447, 659
Tru9I	TTAA	2 cut(s)	447, 659
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	6 cut(s)	134, 569, 572, 701, 956, 1020
TspDTI	ATGAA	1 cut(s)	757
TspRI	CASTG	1 cut(s)	67
Tth111I	GACNNNGTC	1 cut(s)	634
VpaK11BI	GGWCC	2 cut(s)	288, 512
XapI	RAATTY	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	3 cut(s)	397, 708, 759
XhoI	CTCGAG	2 cut(s)	122, 199
XspI	CTAG	2 cut(s)	315, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.