Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Forward (+)

69072936 .. 69077532

Gene Structure 4597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG471100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGATACTAACCAGGAAAAGCATGACATTTGAATCACAGTCTATGAAGAAGGAGAAGAAGTACAGTGGGGTTTTTGGGGACATGTACACCAGTGTGGCCATTATTCCCAAAGACCTTGAGCTTGACAAGGAGGCCGCCCACCCATCACCCTTTGAGCTCCACTTCCAATTCCCTGACCTCTCCCAACCCATCAGAGGATTCTTGAGGACAAGAGAAGTTGGAGAGTTCCTTAGTGGGGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGACTAGAATGATAGTTGGTGTTGGATCTAGAAACATCTCTGGCAGTTTCTTAGAGGTCATTGAGAAGCAGGGTTGGCAAGGGCTGTGGGCAGGAAATGCAGTCAATATGATCCGCATAGTCCCCACCCAGGCAGTTGAGTTTGGAACGTTTGAGTTTGTTAAACGAGCAATGACGTCGACACAAGAGAAGTGGAAGCAGACTGAAGGCCCAAAGGTGCAAATTGGCCCTGTAAGCTTGGACTTCTCTATCTCCTGGATTTCTCCTGTTGCTGTGGCTGGTGCTGCTGCTGGAATTGCTAGCACACTTGTGTGTCATCCCCTTGAAGTTTTGAAGGATCGGTTGACTGTCTGTCCTGAGGCATATCCTAGTATAGGTGTAGCAATCTGTAAGATTTATAAGGAAGGTGGTATTGCTTCATGCTATTCGGGTCTTTCACCTACACTGATTGGGATGCTTCCCTACAGTACATGCTATTATTTCATGTACGAGAAAATCAAGAAATCCTACTGCCTAACAAAGAAAAAAGAGTCTCTAAGCCGTCCAGAGATGTTACTGGTCGGAGCTCTGGCAGGTTTTACAGCTAGCACAATCAGCTTTCCATTGGAGGTGGCCAGGAAACGGCTGATGGTTGGAGCTATGCAGGGTAAGTGCCCGCCCCATATGGCAGCTGCACTTTCAGAAGTGATACGGGAGGAAGGTTTATTGGGACTCTACAGAGGGTGGGGTGCAAGCTGTTTAAAGGTCATGCCTTCATCTGGCATCACCTGGATGTTTTATGAAGCTTGGAAAGACATATTGCTCGTTCAGAGACATCATCCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

371

Amino Acids

40.89

Weight (kDa)

9.12

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	74 - 155	9e-20	Mitochondrial carrier protein
Mito_carr	PF00153	187 - 266	5.3e-18	Mitochondrial carrier protein
Mito_carr	PF00153	278 - 364	3.5e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	687, 1114
AatII	GACGTC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	851
AccI	GTMKAC	1 cut(s)	467
AciI	CCGC	3 cut(s)	135, 403, 944
AclI	AACGTT	1 cut(s)	437
AclWI	GGATC	3 cut(s)	322, 394, 633
AcoI	YGGCCR	2 cut(s)	96, 900
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	4 cut(s)	62, 86, 757, 776
AfiI	CCNNNNNNNGG	6 cut(s)	194, 235, 418, 662, 909, 1046
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	32, 614, 622
AhdI	GACNNNNNGTC	1 cut(s)	639
AjnI	CCWGG	5 cut(s)	11, 417, 542, 902, 1055
AleI	CACNNNNGTG	3 cut(s)	92, 596, 598
Alw21I	GWGCWC	2 cut(s)	159, 856
Alw26I	GTCTC	3 cut(s)	275, 825, 1093
AlwI	GGATC	3 cut(s)	322, 394, 633
AoxI	GGCC	5 cut(s)	96, 132, 496, 514, 900
ApeKI	GCWGC	4 cut(s)	572, 575, 956, 959
AspS9I	GGNCC	2 cut(s)	497, 515
AsuHPI	GGTGA	3 cut(s)	138, 717, 1045
AsuNHI	GCTAGC	2 cut(s)	587, 872
AxyI	CCTNAGG	1 cut(s)	645
BaeGI	GKGCMC	1 cut(s)	944
BalI	TGGCCA	2 cut(s)	98, 902
BanII	GRGCYC	2 cut(s)	159, 856
Bbv12I	GWGCWC	2 cut(s)	159, 856
BbvI	GCAGC	4 cut(s)	559, 562, 946, 968
BccI	CCATC	4 cut(s)	151, 197, 293, 910
BceAI	ACGGC	2 cut(s)	813, 926
BcgI	CGANNNNNNTGC	2 cut(s)	447, 481
BciT130I	CCWGG	5 cut(s)	13, 419, 544, 904, 1057
BcoDI	GTCTC	3 cut(s)	275, 825, 1093
BfaI	CTAG	5 cut(s)	294, 318, 588, 657, 873
BfmI	CTRYAG	2 cut(s)	751, 1003
BfuAI	ACCTGC	1 cut(s)	851
BisI	GCNGC	5 cut(s)	135, 573, 576, 957, 960
BlsI	GCNGC	5 cut(s)	136, 574, 577, 958, 961
Bme1390I	CCNGG	5 cut(s)	13, 419, 544, 904, 1057
BmeRI	GACNNNNNGTC	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	497, 515
BmrFI	CCNGG	5 cut(s)	13, 419, 544, 904, 1057
BmsI	GCATC	2 cut(s)	732, 1059
BmtI	GCTAGC	2 cut(s)	591, 876
BpuEI	CTTGAG	3 cut(s)	137, 223, 299
BsaHI	GRCGYC	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	6 cut(s)	194, 235, 418, 662, 909, 1046
Bse1I	ACTGG	2 cut(s)	90, 849
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	2 cut(s)	258, 465
BseBI	CCWGG	5 cut(s)	13, 419, 544, 904, 1057
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	4 cut(s)	604, 747, 1065, 1105
BseLI	CCNNNNNNNGG	6 cut(s)	194, 235, 418, 662, 909, 1046
BseMI	GCAATG	2 cut(s)	258, 465
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	2 cut(s)	90, 849
BseRI	GAGGAG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	944
BseXI	GCAGC	4 cut(s)	559, 562, 946, 968
BsgI	GTGCAG	1 cut(s)	945
BshFI	GGCC	5 cut(s)	98, 134, 498, 516, 902
BsiHKAI	GWGCWC	2 cut(s)	159, 856
BslFI	GGGAC	3 cut(s)	92, 395, 1011
BslI	CCNNNNNNNGG	6 cut(s)	194, 235, 418, 662, 909, 1046
BsmAI	GTCTC	3 cut(s)	275, 825, 1093
BsmFI	GGGAC	3 cut(s)	92, 395, 1011
BsnI	GGCC	5 cut(s)	98, 134, 498, 516, 902
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	3 cut(s)	159, 856, 944
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	314, 399, 625
BspACI	CCGC	3 cut(s)	135, 403, 944
BspANI	GGCC	5 cut(s)	98, 134, 498, 516, 902
BspCNI	CTCAG	1 cut(s)	637
BspMI	ACCTGC	1 cut(s)	851
BspOI	GCTAGC	2 cut(s)	591, 876
BspPI	GGATC	3 cut(s)	322, 394, 633
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	258, 465
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	90, 849
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	3 cut(s)	314, 399, 625
BssNI	GRCGYC	1 cut(s)	464
Bst2UI	CCWGG	5 cut(s)	13, 419, 544, 904, 1057
Bst4CI	ACNGT	4 cut(s)	39, 65, 637, 755
BstACI	GRCGYC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	4 cut(s)	589, 874, 944, 1021
BstDEI	CTNAG	4 cut(s)	230, 340, 645, 824
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	4 cut(s)	604, 747, 1065, 1105
BstKTI	GATC	3 cut(s)	317, 402, 628
BstMAI	GTCTC	3 cut(s)	275, 825, 1093
BstMBI	GATC	3 cut(s)	314, 399, 625
BstMWI	GCNNNNNNNGC	7 cut(s)	269, 364, 386, 522, 572, 584, 882
BstNI	CCWGG	5 cut(s)	13, 419, 544, 904, 1057
BstNSI	RCATGY	2 cut(s)	85, 762
BstSCI	CCNGG	5 cut(s)	11, 417, 542, 902, 1055
BstSFI	CTRYAG	2 cut(s)	751, 1003
BstSLI	GKGCMC	1 cut(s)	944
BstV1I	GCAGC	4 cut(s)	559, 562, 946, 968
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	5 cut(s)	98, 134, 498, 516, 902
BtsCI	GGATG	4 cut(s)	604, 747, 1065, 1105
BtsIMutI	CAGTG	3 cut(s)	70, 97, 731
BveI	ACCTGC	1 cut(s)	851
Cac8I	GCNNGC	4 cut(s)	589, 874, 944, 1021
Cfr13I	GGNCC	2 cut(s)	497, 515
Csp6I	GTAC	4 cut(s)	61, 85, 756, 775
CspCI	CAANNNNNGTGG	4 cut(s)	356, 391, 461, 496
CviAII	CATG	6 cut(s)	22, 82, 708, 759, 772, 1036
CviQI	GTAC	4 cut(s)	61, 85, 756, 775
DdeI	CTNAG	4 cut(s)	230, 340, 645, 824
DpnI	GATC	3 cut(s)	316, 401, 627
DpnII	GATC	3 cut(s)	314, 399, 625
DraI	TTTAAA	1 cut(s)	1029
DriI	GACNNNNNGTC	1 cut(s)	639
EaeI	YGGCCR	2 cut(s)	96, 900
Eam1105I	GACNNNNNGTC	1 cut(s)	639
Ecl136II	GAGCTC	2 cut(s)	157, 854
Eco24I	GRGCYC	2 cut(s)	159, 856
Eco31I	GGTCTC	1 cut(s)	275
Eco53kI	GAGCTC	2 cut(s)	157, 854
Eco57I	CTGAAG	1 cut(s)	513
Eco81I	CCTNAGG	1 cut(s)	645
EcoICRI	GAGCTC	2 cut(s)	157, 854
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoRII	CCWGG	5 cut(s)	11, 417, 542, 902, 1055
EcoT38I	GRGCYC	2 cut(s)	159, 856
FaeI	CATG	6 cut(s)	25, 85, 711, 762, 775, 1039
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	3 cut(s)	92, 395, 1011
FatI	CATG	6 cut(s)	21, 81, 707, 758, 771, 1035
FauI	CCCGC	1 cut(s)	951
FauNDI	CATATG	1 cut(s)	951
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	5 cut(s)	135, 573, 576, 957, 960
FokI	GGATG	4 cut(s)	591, 754, 1072, 1092
FriOI	GRGCYC	2 cut(s)	159, 856
Fsp4HI	GCNGC	5 cut(s)	135, 573, 576, 957, 960
FspBI	CTAG	5 cut(s)	294, 318, 588, 657, 873
GluI	GCNGC	5 cut(s)	135, 573, 576, 957, 960
HaeIII	GGCC	5 cut(s)	98, 134, 498, 516, 902
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	6 cut(s)	25, 85, 711, 762, 775, 1039
HincII	GTYRAC	2 cut(s)	468, 633
HindII	GTYRAC	2 cut(s)	468, 633
HindIII	AAGCTT	2 cut(s)	523, 1071
HinfI	GANTC	4 cut(s)	32, 198, 818, 999
HphI	GGTGA	3 cut(s)	138, 717, 1045
Hpy166II	GTNNAC	3 cut(s)	87, 468, 633
Hpy188I	TCNGA	4 cut(s)	194, 851, 970, 1098
Hpy188III	TCNNGA	7 cut(s)	202, 278, 289, 318, 644, 787, 833
Hpy8I	GTNNAC	3 cut(s)	87, 468, 633
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	6 cut(s)	43, 488, 616, 686, 980, 1050
HpyCH4III	ACNGT	4 cut(s)	39, 65, 637, 755
HpyCH4IV	ACGT	2 cut(s)	437, 464
HpyCH4V	TGCA	5 cut(s)	389, 508, 931, 962, 1019
HpyF10VI	GCNNNNNNNGC	7 cut(s)	269, 364, 386, 522, 572, 584, 882
HpyF3I	CTNAG	4 cut(s)	230, 340, 645, 824
HpySE526I	ACGT	2 cut(s)	437, 464
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	6 cut(s)	25, 85, 711, 762, 775, 1039
Kzo9I	GATC	3 cut(s)	314, 399, 625
LmnI	GCTCC	4 cut(s)	162, 277, 851, 923
Lsp1109I	GCAGC	4 cut(s)	559, 562, 946, 968
LweI	GCATC	2 cut(s)	732, 1059
MaeI	CTAG	5 cut(s)	294, 318, 588, 657, 873
MaeII	ACGT	2 cut(s)	437, 464
MaeIII	GTNAC	1 cut(s)	840
MalI	GATC	3 cut(s)	316, 401, 627
MboI	GATC	3 cut(s)	314, 399, 625
MboII	GAAGA	2 cut(s)	58, 67
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	3 cut(s)	159, 856, 944
MlsI	TGGCCA	2 cut(s)	98, 902
MluCI	AATT	3 cut(s)	167, 510, 582
MluNI	TGGCCA	2 cut(s)	98, 902
MlyI	GAGTC	2 cut(s)	827, 993
MmeI	TCCRAC	4 cut(s)	199, 292, 829, 901
Mox20I	TGGCCA	2 cut(s)	98, 902
MscI	TGGCCA	2 cut(s)	98, 902
MseI	TTAA	2 cut(s)	450, 1028
MslI	CAYNNNNRTG	4 cut(s)	92, 596, 598, 1058
Msp20I	TGGCCA	2 cut(s)	98, 902
MspA1I	CMGCKG	1 cut(s)	959
MspR9I	CCNGG	5 cut(s)	13, 419, 544, 904, 1057
MvaI	CCWGG	5 cut(s)	13, 419, 544, 904, 1057
MwoI	GCNNNNNNNGC	7 cut(s)	269, 364, 386, 522, 572, 584, 882
NdeI	CATATG	1 cut(s)	951
NdeII	GATC	3 cut(s)	314, 399, 625
NheI	GCTAGC	2 cut(s)	587, 872
NlaIII	CATG	6 cut(s)	25, 85, 711, 762, 775, 1039
NspI	RCATGY	2 cut(s)	85, 762
OliI	CACNNNNGTG	3 cut(s)	92, 596, 598
PciI	ACATGT	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	32, 198
PfoI	TCCNGGA	1 cut(s)	542
PkrI	GCNGC	5 cut(s)	136, 574, 577, 958, 961
PleI	GAGTC	2 cut(s)	826, 993
PpsI	GAGTC	2 cut(s)	826, 993
PscI	ACATGT	1 cut(s)	81
PsiI	TTATAA	2 cut(s)	687, 1114
Psp124BI	GAGCTC	2 cut(s)	159, 856
Psp1406I	AACGTT	1 cut(s)	437
Psp6I	CCWGG	5 cut(s)	11, 417, 542, 902, 1055
PspGI	CCWGG	5 cut(s)	11, 417, 542, 902, 1055
PspPI	GGNCC	2 cut(s)	497, 515
PsuI	RGATCY	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	959
RsaI	GTAC	4 cut(s)	62, 86, 757, 776
RsaNI	GTAC	4 cut(s)	61, 85, 756, 775
RseI	CAYNNNNRTG	4 cut(s)	92, 596, 598, 1058
SacI	GAGCTC	2 cut(s)	159, 856
SalI	GTCGAC	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	450, 1028
SatI	GCNGC	5 cut(s)	135, 573, 576, 957, 960
Sau3AI	GATC	3 cut(s)	314, 399, 625
Sau96I	GGNCC	2 cut(s)	497, 515
SchI	GAGTC	2 cut(s)	827, 993
ScrFI	CCNGG	5 cut(s)	13, 419, 544, 904, 1057
SduI	GDGCHC	3 cut(s)	159, 856, 944
SfaNI	GCATC	2 cut(s)	732, 1059
SfcI	CTRYAG	2 cut(s)	751, 1003
SmiMI	CAYNNNNRTG	4 cut(s)	92, 596, 598, 1058
SmlI	CTYRAG	3 cut(s)	116, 202, 278
SmoI	CTYRAG	3 cut(s)	116, 202, 278
Sse9I	AATT	3 cut(s)	167, 510, 582
SsiI	CCGC	3 cut(s)	135, 403, 944
SspMI	CTAG	5 cut(s)	294, 318, 588, 657, 873
SstI	GAGCTC	2 cut(s)	159, 856
StyD4I	CCNGG	5 cut(s)	11, 417, 542, 902, 1055
TaaI	ACNGT	4 cut(s)	39, 65, 637, 755
TaiI	ACGT	2 cut(s)	440, 467
TaqI	TCGA	1 cut(s)	467
TasI	AATT	3 cut(s)	167, 510, 582
TatI	WGTACW	3 cut(s)	60, 84, 755
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	32, 198
Tru1I	TTAA	2 cut(s)	450, 1028
Tru9I	TTAA	2 cut(s)	450, 1028
TscAI	CASTG	3 cut(s)	70, 97, 738
TseI	GCWGC	4 cut(s)	572, 575, 956, 959
TspDTI	ATGAA	5 cut(s)	59, 696, 760, 1032, 1083
TspRI	CASTG	3 cut(s)	70, 97, 738
XagI	CCTNNNNNAGG	1 cut(s)	660
XbaI	TCTAGA	1 cut(s)	317
XceI	RCATGY	2 cut(s)	85, 762
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	5 cut(s)	294, 318, 588, 657, 873
ZraI	GACGTC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.