Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Reverse (-)

19439541 .. 19443803

Gene Structure 4263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTGCTTTAGGGGTTTCTTGAGGACAAGAGAAGTTGGAGAGTTCCTTAGTGGGGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGACTAGAATGATAGTTGGTGTTGGATCTAGAAACATCTCTGGCAGTTTCTTAGAGGTCATTGAGAAGCAGGGTTGGCAAGGGCTGTGGGCAGGAAATGCAGTCAATATGATCCGCATAGTCCCCACCCAGGCAGTTGAGTTTGGAACGTTTGAGTTTGTTAAACGAGCAATGACGTCAGCACAAGAAAAGTGGAAGCAGACTGAAGGCCCAAAGGTGCAAATTGGCCCTGTAAGCTTGGACTTTTCTATCTCCTGGATTTCTCCTGTTGCTGTGGCTGGTGCTGCTGCTGGAATTGCTAGCACACTTGTGTGTCATCCCCTTGAAGTTTTGAAGGATCGGTTGACTGTCTGTCCTGAGGCATATCCGAGTATAGGTGTAGCAATCTGTAAGATTTATAAGGAAGGTGGTATTGCTTCATGCTATTCGGGTCTTTCACCTACACTGATTGGGATGCTTCCCTACAGTACATGCTATTATTTCATGTACGAGAAAATCAAGAAATCCTACTGCCTAACAAAGAAAAAAGAGTCTCTAAGCCGTCCAGAGATGTTACTGGTCGGAGCTCTGGCAGGTTTTACAGCTAGCACAATCAGCTTTCCATTGGAGGTGGCCAGGAAACGGCTGATGGTTGGTGCTATGCAGGGTAAGTGCCCACCCCATATGGCAGCTGCACTTTCAGAAGTGATACGGGAGGAAGGTTTATTGGGACTCTACAGAGGGTGGGGTGCAAGCTGTTTAAAGGTCATGCCTTCATCTGGCATCACCTGGATGTTTTATGAAGCTTGGAAAGACATATTGCTCGTTCAGAGACATCATCCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

310

Amino Acids

33.89

Weight (kDa)

9.24

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	13 - 94	6.6e-20	Mitochondrial carrier protein
Mito_carr	PF00153	126 - 205	3.8e-18	Mitochondrial carrier protein
Mito_carr	PF00153	217 - 303	2.5e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	504, 931
AatII	GACGTC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	668
AciI	CCGC	1 cut(s)	220
AclI	AACGTT	1 cut(s)	254
AclWI	GGATC	3 cut(s)	139, 211, 450
AcoI	YGGCCR	1 cut(s)	717
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	2 cut(s)	574, 593
AfiI	CCNNNNNNNGG	5 cut(s)	52, 235, 479, 726, 863
AgsI	TTSAA	2 cut(s)	431, 439
AhdI	GACNNNNNGTC	1 cut(s)	456
AjnI	CCWGG	4 cut(s)	234, 359, 719, 872
AleI	CACNNNNGTG	2 cut(s)	413, 415
AluBI	AGCT	8 cut(s)	80, 342, 671, 689, 702, 776, 840, 890
AluI	AGCT	8 cut(s)	80, 342, 671, 689, 702, 776, 840, 890
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	3 cut(s)	92, 642, 910
AlwI	GGATC	3 cut(s)	139, 211, 450
AoxI	GGCC	3 cut(s)	313, 331, 717
ApeKI	GCWGC	4 cut(s)	389, 392, 773, 776
AspS9I	GGNCC	2 cut(s)	314, 332
AsuHPI	GGTGA	2 cut(s)	534, 862
AsuNHI	GCTAGC	2 cut(s)	404, 689
AxyI	CCTNAGG	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	761
BalI	TGGCCA	1 cut(s)	719
BanII	GRGCYC	1 cut(s)	673
Bbv12I	GWGCWC	1 cut(s)	673
BbvI	GCAGC	4 cut(s)	376, 379, 763, 785
BccI	CCATC	2 cut(s)	110, 727
BceAI	ACGGC	2 cut(s)	630, 743
BciT130I	CCWGG	4 cut(s)	236, 361, 721, 874
BcoDI	GTCTC	3 cut(s)	92, 642, 910
BfaI	CTAG	4 cut(s)	111, 135, 405, 690
BfmI	CTRYAG	2 cut(s)	568, 820
BfuAI	ACCTGC	1 cut(s)	668
BisI	GCNGC	4 cut(s)	390, 393, 774, 777
BlsI	GCNGC	4 cut(s)	391, 394, 775, 778
Bme1390I	CCNGG	4 cut(s)	236, 361, 721, 874
BmeRI	GACNNNNNGTC	1 cut(s)	456
BmgT120I	GGNCC	2 cut(s)	314, 332
BmrFI	CCNGG	4 cut(s)	236, 361, 721, 874
BmsI	GCATC	2 cut(s)	549, 876
BmtI	GCTAGC	2 cut(s)	408, 693
BpuEI	CTTGAG	2 cut(s)	40, 116
BsaHI	GRCGYC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 235, 479, 726, 863
Bse1I	ACTGG	1 cut(s)	666
Bse21I	CCTNAGG	1 cut(s)	462
Bse3DI	GCAATG	2 cut(s)	75, 282
BseBI	CCWGG	4 cut(s)	236, 361, 721, 874
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	4 cut(s)	421, 564, 882, 922
BseLI	CCNNNNNNNGG	5 cut(s)	52, 235, 479, 726, 863
BseMI	GCAATG	2 cut(s)	75, 282
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	761
BseXI	GCAGC	4 cut(s)	376, 379, 763, 785
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	3 cut(s)	315, 333, 719
BsiHKAI	GWGCWC	1 cut(s)	673
BslFI	GGGAC	2 cut(s)	212, 828
BslI	CCNNNNNNNGG	5 cut(s)	52, 235, 479, 726, 863
BsmAI	GTCTC	3 cut(s)	92, 642, 910
BsmFI	GGGAC	2 cut(s)	212, 828
BsnI	GGCC	3 cut(s)	315, 333, 719
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	673, 761
Bsp143I	GATC	3 cut(s)	131, 216, 442
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	3 cut(s)	315, 333, 719
BspCNI	CTCAG	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	668
BspOI	GCTAGC	2 cut(s)	408, 693
BspPI	GGATC	3 cut(s)	139, 211, 450
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	75, 282
BsrI	ACTGG	1 cut(s)	666
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	3 cut(s)	131, 216, 442
BssNI	GRCGYC	1 cut(s)	281
Bst2UI	CCWGG	4 cut(s)	236, 361, 721, 874
Bst4CI	ACNGT	2 cut(s)	454, 572
BstACI	GRCGYC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	406, 691, 838
BstDEI	CTNAG	4 cut(s)	47, 157, 462, 641
BstF5I	GGATG	4 cut(s)	421, 564, 882, 922
BstKTI	GATC	3 cut(s)	134, 219, 445
BstMAI	GTCTC	3 cut(s)	92, 642, 910
BstMBI	GATC	3 cut(s)	131, 216, 442
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 181, 203, 339, 389, 401, 699
BstNI	CCWGG	4 cut(s)	236, 361, 721, 874
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	4 cut(s)	234, 359, 719, 872
BstSFI	CTRYAG	2 cut(s)	568, 820
BstSLI	GKGCMC	1 cut(s)	761
BstV1I	GCAGC	4 cut(s)	376, 379, 763, 785
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	315, 333, 719
BtsCI	GGATG	4 cut(s)	421, 564, 882, 922
BtsIMutI	CAGTG	1 cut(s)	548
BveI	ACCTGC	1 cut(s)	668
Cac8I	GCNNGC	3 cut(s)	406, 691, 838
Cfr13I	GGNCC	2 cut(s)	314, 332
Csp6I	GTAC	2 cut(s)	573, 592
CspCI	CAANNNNNGTGG	4 cut(s)	173, 208, 278, 313
CviAII	CATG	4 cut(s)	525, 576, 589, 853
CviQI	GTAC	2 cut(s)	573, 592
DdeI	CTNAG	4 cut(s)	47, 157, 462, 641
DpnI	GATC	3 cut(s)	133, 218, 444
DpnII	GATC	3 cut(s)	131, 216, 442
DraI	TTTAAA	1 cut(s)	846
DriI	GACNNNNNGTC	1 cut(s)	456
EaeI	YGGCCR	1 cut(s)	717
Eam1105I	GACNNNNNGTC	1 cut(s)	456
Ecl136II	GAGCTC	1 cut(s)	671
Eco24I	GRGCYC	1 cut(s)	673
Eco31I	GGTCTC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	671
Eco57I	CTGAAG	1 cut(s)	330
Eco81I	CCTNAGG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	671
EcoRII	CCWGG	4 cut(s)	234, 359, 719, 872
EcoT38I	GRGCYC	1 cut(s)	673
FaeI	CATG	4 cut(s)	528, 579, 592, 856
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	2 cut(s)	212, 828
FatI	CATG	4 cut(s)	524, 575, 588, 852
FauNDI	CATATG	1 cut(s)	768
Fnu4HI	GCNGC	4 cut(s)	390, 393, 774, 777
FokI	GGATG	4 cut(s)	408, 571, 889, 909
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	4 cut(s)	390, 393, 774, 777
FspBI	CTAG	4 cut(s)	111, 135, 405, 690
GluI	GCNGC	4 cut(s)	390, 393, 774, 777
HaeIII	GGCC	3 cut(s)	315, 333, 719
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	4 cut(s)	528, 579, 592, 856
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	2 cut(s)	340, 888
HinfI	GANTC	2 cut(s)	635, 816
HphI	GGTGA	2 cut(s)	534, 862
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	4 cut(s)	474, 668, 787, 915
Hpy188III	TCNNGA	7 cut(s)	19, 95, 106, 135, 461, 604, 650
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	5 cut(s)	305, 433, 503, 797, 867
HpyCH4III	ACNGT	2 cut(s)	454, 572
HpyCH4IV	ACGT	2 cut(s)	254, 281
HpyCH4V	TGCA	5 cut(s)	206, 325, 748, 779, 836
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 181, 203, 339, 389, 401, 699
HpyF3I	CTNAG	4 cut(s)	47, 157, 462, 641
HpySE526I	ACGT	2 cut(s)	254, 281
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	4 cut(s)	528, 579, 592, 856
Kzo9I	GATC	3 cut(s)	131, 216, 442
LmnI	GCTCC	2 cut(s)	94, 668
Lsp1109I	GCAGC	4 cut(s)	376, 379, 763, 785
LweI	GCATC	2 cut(s)	549, 876
MaeI	CTAG	4 cut(s)	111, 135, 405, 690
MaeII	ACGT	2 cut(s)	254, 281
MaeIII	GTNAC	1 cut(s)	657
MalI	GATC	3 cut(s)	133, 218, 444
MboI	GATC	3 cut(s)	131, 216, 442
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	2 cut(s)	673, 761
MlsI	TGGCCA	1 cut(s)	719
MluCI	AATT	2 cut(s)	327, 399
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	2 cut(s)	644, 810
MmeI	TCCRAC	3 cut(s)	16, 109, 646
MnlI	CCTC	7 cut(s)	15, 102, 154, 457, 706, 793, 818
Mox20I	TGGCCA	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	2 cut(s)	267, 845
MslI	CAYNNNNRTG	3 cut(s)	413, 415, 875
Msp20I	TGGCCA	1 cut(s)	719
MspA1I	CMGCKG	1 cut(s)	776
MspR9I	CCNGG	4 cut(s)	236, 361, 721, 874
MvaI	CCWGG	4 cut(s)	236, 361, 721, 874
MwoI	GCNNNNNNNGC	7 cut(s)	86, 181, 203, 339, 389, 401, 699
NdeI	CATATG	1 cut(s)	768
NdeII	GATC	3 cut(s)	131, 216, 442
NheI	GCTAGC	2 cut(s)	404, 689
NlaIII	CATG	4 cut(s)	528, 579, 592, 856
NspI	RCATGY	1 cut(s)	579
OliI	CACNNNNGTG	2 cut(s)	413, 415
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	391, 394, 775, 778
PleI	GAGTC	2 cut(s)	643, 810
PpsI	GAGTC	2 cut(s)	643, 810
PsiI	TTATAA	2 cut(s)	504, 931
Psp124BI	GAGCTC	1 cut(s)	673
Psp1406I	AACGTT	1 cut(s)	254
Psp6I	CCWGG	4 cut(s)	234, 359, 719, 872
PspGI	CCWGG	4 cut(s)	234, 359, 719, 872
PspPI	GGNCC	2 cut(s)	314, 332
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	574, 593
RsaNI	GTAC	2 cut(s)	573, 592
RseI	CAYNNNNRTG	3 cut(s)	413, 415, 875
SacI	GAGCTC	1 cut(s)	673
SaqAI	TTAA	2 cut(s)	267, 845
SatI	GCNGC	4 cut(s)	390, 393, 774, 777
Sau3AI	GATC	3 cut(s)	131, 216, 442
Sau96I	GGNCC	2 cut(s)	314, 332
SchI	GAGTC	2 cut(s)	644, 810
ScrFI	CCNGG	4 cut(s)	236, 361, 721, 874
SduI	GDGCHC	2 cut(s)	673, 761
SfaNI	GCATC	2 cut(s)	549, 876
SfcI	CTRYAG	2 cut(s)	568, 820
SmiMI	CAYNNNNRTG	3 cut(s)	413, 415, 875
SmlI	CTYRAG	2 cut(s)	19, 95
SmoI	CTYRAG	2 cut(s)	19, 95
Sse9I	AATT	2 cut(s)	327, 399
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	4 cut(s)	111, 135, 405, 690
SstI	GAGCTC	1 cut(s)	673
StyD4I	CCNGG	4 cut(s)	234, 359, 719, 872
TaaI	ACNGT	2 cut(s)	454, 572
TaiI	ACGT	2 cut(s)	257, 284
TasI	AATT	2 cut(s)	327, 399
TatI	WGTACW	1 cut(s)	572
Tru1I	TTAA	2 cut(s)	267, 845
Tru9I	TTAA	2 cut(s)	267, 845
TscAI	CASTG	1 cut(s)	555
TseI	GCWGC	4 cut(s)	389, 392, 773, 776
TspDTI	ATGAA	4 cut(s)	513, 577, 849, 900
TspRI	CASTG	1 cut(s)	555
XbaI	TCTAGA	1 cut(s)	134
XceI	RCATGY	1 cut(s)	579
XspI	CTAG	4 cut(s)	111, 135, 405, 690
ZraI	GACGTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.