Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010149

Physical Location & Seq

Genomic Coordinates Reverse (-)

52640706 .. 52640900

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0410400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCATACTCGGATCCACCTAAATAAATGGCAGAAGGAGATTTTCAAAGGCCGGCAATTACAGATGTTGGGTATTCGTTCTAGGCTGGAGGAGTTGTTGAATGTATTCCAGTCGGTGCTTGTACAAGATGAGAAGAAAGAACTAATGGACAAGCTACAGAGCTTATTATTCCAAGAGGAACTGTTTTGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

64

Amino Acids

7.9

Weight (kDa)

9.22

Isoelectric Point (pI)

71.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20240
fragaria_vesca	FvH4_6g36880 FvH4_6g36880
malus_domestica	MD09G1166100.v1.1 MD17G1161600.v1.1
prunus_persica	Prupe.3G023700_v2.0.a1 Prupe.3G023700_v2.0.a1
pyrus_communis	pycom09g08330 pycom17g15470
rosa_chinensis	RchiOBHm_Chr2g0149291
rosa_laevigata	RLG00000020390
rosa_multiflora	Rmu_sc0000873.1_g000007
rosa_roxburghii	Rroxscaffold_2G00098240
rosa_rugosa	Rorug02G0410200 Rorug02G0410300 Rorug02G0410400
rosa_samantha	Rh2AG471100 Rh2BG483300 Rh2CG457000 Rh2DG492300
rosa_wichuraiana	Rw2G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	7, 20
AfaI	GTAC	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	46, 100
AluBI	AGCT	2 cut(s)	154, 162
AluI	AGCT	2 cut(s)	154, 162
AlwI	GGATC	2 cut(s)	7, 20
AoxI	GGCC	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	52
BsnI	GGCC	1 cut(s)	51
Bsp1407I	TGTACA	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	14
BspPI	GGATC	2 cut(s)	7, 20
BsrFI	RCCGGY	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	51
BssMI	GATC	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	183
BstAUI	TGTACA	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	53
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	122
CviJI	RGCY	4 cut(s)	51, 85, 154, 162
CviKI_1	RGCY	4 cut(s)	51, 85, 154, 162
CviQI	GTAC	1 cut(s)	122
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	1 cut(s)	6
FspBI	CTAG	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	52
HpaII	CCGG	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	3 cut(s)	65, 71, 122
MaeI	CTAG	1 cut(s)	81
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	145
MflI	RGATCY	1 cut(s)	12
MluCI	AATT	1 cut(s)	56
MnlI	CCTC	2 cut(s)	82, 169
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	104
MspI	CCGG	1 cut(s)	52
NaeI	GCCGGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	12
NgoMIV	GCCGGC	1 cut(s)	51
NlaIV	GGNNCC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	6
PdiI	GCCGGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	12
SetI	ASST	3 cut(s)	21, 156, 164
SfcI	CTRYAG	1 cut(s)	155
SgeI	CNNG	9 cut(s)	21, 64, 93, 98, 121, 131, 137, 163, 185
Sse9I	AATT	1 cut(s)	56
SspMI	CTAG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	183
TasI	AATT	1 cut(s)	56
TatI	WGTACW	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.