Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Forward (+)

7191559 .. 7192641

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACAAAAATAGATCCAGAAGAAGAACTTGGTCGAAAATGTTGTACCTGCTTCTTCAAGTTCATCTTCACAACTCGTCTCGGCGCTCTTATCTTATGGCTTAGTCTCCGTGCCAAGAAACCCAAATGCTCAATCCAAAACTTTTACATTCCTGCCCTCAGCAAAAACCTAAGCTCACGAGACAATACCACTCTAAATTTCATGGTTCGTTGTGACAATCCGAATAAAGACAAAGGAATCTACTACGACGATGTCCACCTTACTTTCTCCACCATCAACACGACCACGACCAATTCATCTGATCTTGTCTTAGTCGCTAACTACACAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGTTTGGCCGCTAAACAACCAGACGGTTTTACGAGCTGTTTTGCCTAATGGATCGGCGGTTTTCAGGCTGGATCTCAAGACTCATGTGAGATTCAAGATTGTTTTTTGGAAAACTAAATGGTATAGGAGAATTAAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTAATGAGAAAGAGATTAAGATGGAGAAATCTAATTTTTGGAAAACTCATGGATATTGGAGTGAATTTGGTTTTGACGATGATGTTGAACTCACCGGTGATGGAGCTCAAAAGAAAGGAAGTAAGACGAAGAAATCGGATTCTTCTTTACCATTAAGAAGCTCTTTTCCGATTTTTGTTTTGATGAATTTGCTCGTATTCTTTGCTATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

255

Amino Acids

29.38

Weight (kDa)

9.72

Isoelectric Point (pI)

26.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	369
AciI	CCGC	2 cut(s)	386, 434
AclWI	GGATC	3 cut(s)	8, 436, 456
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	3 cut(s)	196, 617, 739
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	4 cut(s)	58, 472, 530, 641
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	5 cut(s)	174, 413, 554, 659, 714
AluI	AGCT	5 cut(s)	174, 413, 554, 659, 714
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	3 cut(s)	83, 110, 174
AlwI	GGATC	3 cut(s)	8, 436, 456
AoxI	GGCC	2 cut(s)	360, 383
ApoI	RAATTY	3 cut(s)	196, 617, 739
AsiGI	ACCGGT	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	551, 637, 662
BanII	GRGCYC	1 cut(s)	661
BauI	CACGAG	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	661
BbvCI	CCTCAGC	1 cut(s)	158
BccI	CCATC	4 cut(s)	281, 536, 568, 647
BcoDI	GTCTC	3 cut(s)	83, 110, 174
BfoI	RGCGCY	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bpu10I	CCTNAGC	2 cut(s)	158, 170
BpuEI	CTTGAG	1 cut(s)	437
BsaWI	WCCGGW	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse118I	RCCGGY	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	362, 385
BshTI	ACCGGT	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	1 cut(s)	648
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	3 cut(s)	83, 110, 174
BsmBI	CGTCTC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	362, 385
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	4 cut(s)	13, 301, 428, 448
BspACI	CCGC	2 cut(s)	386, 434
BspANI	GGCC	2 cut(s)	362, 385
BspCNI	CTCAG	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	3 cut(s)	8, 436, 456
BsrFI	RCCGGY	1 cut(s)	647
BssAI	RCCGGY	1 cut(s)	647
BssMI	GATC	4 cut(s)	13, 301, 428, 448
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst4CI	ACNGT	3 cut(s)	328, 403, 539
BstDEI	CTNAG	5 cut(s)	101, 158, 170, 310, 333
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	4 cut(s)	16, 304, 431, 451
BstMAI	GTCTC	3 cut(s)	83, 110, 174
BstMBI	GATC	4 cut(s)	13, 301, 428, 448
BstX2I	RGATCY	2 cut(s)	13, 448
BstYI	RGATCY	2 cut(s)	13, 448
BsuRI	GGCC	2 cut(s)	362, 385
BtsIMutI	CAGTG	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	56
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	647
Csp6I	GTAC	1 cut(s)	45
CspAI	ACCGGT	1 cut(s)	647
CviAII	CATG	3 cut(s)	202, 461, 602
CviJI	RGCY	9 cut(s)	100, 174, 362, 385, 413, 445, 554, 659, 714
CviKI_1	RGCY	9 cut(s)	100, 174, 362, 385, 413, 445, 554, 659, 714
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	5 cut(s)	101, 158, 170, 310, 333
DpnI	GATC	4 cut(s)	15, 303, 430, 450
DpnII	GATC	4 cut(s)	13, 301, 428, 448
EaeI	YGGCCR	1 cut(s)	383
Ecl136II	GAGCTC	1 cut(s)	659
Eco24I	GRGCYC	1 cut(s)	661
Eco53kI	GAGCTC	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	661
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	3 cut(s)	205, 464, 605
FaiI	YATR	5 cut(s)	97, 203, 462, 501, 603
FalI	AAGNNNNNCTT	6 cut(s)	12, 44, 50, 82, 700, 732
FatI	CATG	3 cut(s)	201, 460, 601
Fnu4HI	GCNGC	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	661
Fsp4HI	GCNGC	1 cut(s)	386
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	362, 385
HapII	CCGG	1 cut(s)	648
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	205, 464, 605
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	4 cut(s)	237, 457, 468, 692
HpaII	CCGG	1 cut(s)	648
HphI	GGTGA	3 cut(s)	551, 637, 662
Hpy166II	GTNNAC	2 cut(s)	256, 535
Hpy188I	TCNGA	4 cut(s)	222, 301, 691, 723
Hpy188III	TCNNGA	4 cut(s)	17, 177, 454, 472
Hpy8I	GTNNAC	2 cut(s)	256, 535
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	3 cut(s)	328, 403, 539
HpyF3I	CTNAG	5 cut(s)	101, 158, 170, 310, 333
Hsp92II	CATG	3 cut(s)	205, 464, 605
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	13, 301, 428, 448
LmnI	GCTCC	1 cut(s)	656
LpnPI	CCDG	7 cut(s)	30, 61, 165, 410, 427, 431, 661
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	4 cut(s)	15, 303, 430, 450
MboI	GATC	4 cut(s)	13, 301, 428, 448
MboII	GAAGA	7 cut(s)	32, 35, 46, 58, 367, 687, 694
MflI	RGATCY	2 cut(s)	13, 448
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	6 cut(s)	196, 292, 507, 586, 617, 739
MlyI	GAGTC	1 cut(s)	451
MnlI	CCTC	1 cut(s)	167
MseI	TTAA	5 cut(s)	510, 549, 570, 707, 766
MspI	CCGG	1 cut(s)	648
NdeII	GATC	4 cut(s)	13, 301, 428, 448
NlaIII	CATG	3 cut(s)	205, 464, 605
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	212
PfeI	GAWTC	3 cut(s)	237, 468, 692
PflFI	GACNNNGTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	369
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	661
PsuI	RGATCY	2 cut(s)	13, 448
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	661
SaqAI	TTAA	5 cut(s)	510, 549, 570, 707, 766
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	4 cut(s)	13, 301, 428, 448
SchI	GAGTC	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	661
SetI	ASST	8 cut(s)	50, 171, 176, 261, 415, 556, 661, 716
SgrAI	CRCCGGYG	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	6 cut(s)	196, 292, 507, 586, 617, 739
SsiI	CCGC	2 cut(s)	386, 434
SstI	GAGCTC	1 cut(s)	661
TaaI	ACNGT	3 cut(s)	328, 403, 539
TaqI	TCGA	1 cut(s)	34
TasI	AATT	6 cut(s)	196, 292, 507, 586, 617, 739
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	3 cut(s)	237, 468, 692
Tru1I	TTAA	5 cut(s)	510, 549, 570, 707, 766
Tru9I	TTAA	5 cut(s)	510, 549, 570, 707, 766
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	52, 190, 285, 752
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	333
Tth111I	GACNNNGTC	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	369
XapI	RAATTY	3 cut(s)	196, 617, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.