Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Reverse (-)

16871921 .. 16872409

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G166500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

CCTGATCAACCCTGCTGCCGGTGCTGCTTCAGCTTCATCTTCACTCTTGGCCTCACAGCCCTCTTCATGTGGCTCAGCCTTCGCACCTCAAAACCCACCTGCAAAGTCCGCTCATTATACATTCCTGCCCTCAACAAGACCCTAAACGACACCACAAACAAGACCCTTTACGTCACCCTCAGGCTGGAGAACGGCAACAAGGACAAGGGAATTTACTACGATGCCATCAACCTCAATTTCACTCTGCCCAGCTTCTACCAGGGGCATCAGAAGAAGGCCACAAAGTCTGCGGTTGGGGAGCCCAAGGAGCTCAACTGGACAGCTGTCTCCCATGCAACCTACTCTAATGGGACTGTGCATTTCAGGGTGGATTTGGTCACCGCTGTGAGCTTCAAGATCATGTTCTGGAGGACCGGGCCGGAGCTAAGAATGAAGTCCTCAGCTACCTCAGCTACCACTGTACCTCAGCTACCACTGTACCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

163

Amino Acids

18.27

Weight (kDa)

9.56

Isoelectric Point (pI)

20.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	111
AciI	CCGC	3 cut(s)	109, 290, 381
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	13
AfaI	GTAC	2 cut(s)	462, 479
AfiI	CCNNNNNNNGG	2 cut(s)	18, 184
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	258
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	9 cut(s)	33, 252, 310, 323, 390, 424, 443, 452, 469
AluI	AGCT	9 cut(s)	33, 252, 310, 323, 390, 424, 443, 452, 469
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	331
AoxI	GGCC	3 cut(s)	49, 276, 416
ApeKI	GCWGC	2 cut(s)	15, 24
ApoI	RAATTY	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	411, 416
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	166, 370
AvaII	GGWCC	1 cut(s)	411
AxyI	CCTNAGG	1 cut(s)	179
BaeI	ACNNNNGTAYC	3 cut(s)	444, 461, 477
BanII	GRGCYC	2 cut(s)	303, 312
Bbv12I	GWGCWC	1 cut(s)	312
BbvCI	CCTCAGC	3 cut(s)	439, 448, 465
BbvI	GCAGC	2 cut(s)	2, 11
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	2 cut(s)	16, 25
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	2 cut(s)	17, 26
Bme1390I	CCNGG	2 cut(s)	260, 415
Bme18I	GGWCC	1 cut(s)	411
BmgT120I	GGNCC	2 cut(s)	411, 416
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	260, 415
BmsI	GCATC	2 cut(s)	211, 274
BoxI	GACNNNNGTC	1 cut(s)	323
BpmI	CTGGAG	2 cut(s)	206, 427
Bpu10I	CCTNAGC	3 cut(s)	439, 448, 465
Bpu1102I	GCTNAGC	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	259, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 184
Bse118I	RCCGGY	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	320
Bse21I	CCTNAGG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	259, 303
BseLI	CCNNNNNNNGG	2 cut(s)	18, 184
BseMII	CTCAG	5 cut(s)	88, 193, 453, 462, 479
BseNI	ACTGG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	2, 11
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	3 cut(s)	51, 278, 418
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	3 cut(s)	19, 414, 419
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	18, 184
BsmAI	GTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	3 cut(s)	51, 278, 418
Bsp1286I	GDGCHC	2 cut(s)	303, 312
Bsp143I	GATC	2 cut(s)	4, 396
Bsp1720I	GCTNAGC	1 cut(s)	74
BspACI	CCGC	3 cut(s)	109, 290, 381
BspANI	GGCC	3 cut(s)	51, 278, 418
BspCNI	CTCAG	5 cut(s)	87, 192, 452, 461, 478
BspLI	GGNNCC	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	259, 303
BssMI	GATC	2 cut(s)	4, 396
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	355, 460, 477
Bst6I	CTCTTC	1 cut(s)	68
BstDEI	CTNAG	6 cut(s)	74, 179, 425, 439, 448, 465
BstEII	GGTNACC	1 cut(s)	376
BstKTI	GATC	2 cut(s)	7, 399
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	2 cut(s)	4, 396
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 24, 30, 108, 307, 449
BstNI	CCWGG	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	323
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	258, 413
BstV1I	GCAGC	2 cut(s)	2, 11
Bsu36I	CCTNAGG	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	51, 278, 418
BtsIMutI	CAGTG	2 cut(s)	456, 473
BveI	ACCTGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	411, 416
Csp6I	GTAC	2 cut(s)	461, 478
CviAII	CATG	3 cut(s)	67, 332, 400
CviQI	GTAC	2 cut(s)	461, 478
DdeI	CTNAG	6 cut(s)	74, 179, 425, 439, 448, 465
DpnI	GATC	2 cut(s)	6, 398
DpnII	GATC	2 cut(s)	4, 396
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	303, 312
Eco47I	GGWCC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	179
Eco91I	GGTNACC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	310
EcoO65I	GGTNACC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	303, 312
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	3 cut(s)	70, 335, 403
FaiI	YATR	5 cut(s)	68, 118, 333, 401, 487
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	3 cut(s)	66, 331, 399
FbaI	TGATCA	1 cut(s)	4
Fnu4HI	GCNGC	2 cut(s)	16, 25
FriOI	GRGCYC	2 cut(s)	303, 312
Fsp4HI	GCNGC	2 cut(s)	16, 25
GluI	GCNGC	2 cut(s)	16, 25
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	2 cut(s)	206, 427
HaeIII	GGCC	3 cut(s)	51, 278, 418
HapII	CCGG	3 cut(s)	19, 414, 419
Hin1II	CATG	3 cut(s)	70, 335, 403
HpaII	CCGG	3 cut(s)	19, 414, 419
HphI	GGTGA	2 cut(s)	166, 370
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	2 cut(s)	394, 406
HpyAV	CCTTC	2 cut(s)	89, 268
HpyCH4III	ACNGT	3 cut(s)	355, 460, 477
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	102, 335, 358
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 24, 30, 108, 307, 449
HpyF3I	CTNAG	6 cut(s)	74, 179, 425, 439, 448, 465
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	70, 335, 403
Ksp22I	TGATCA	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	4, 396
LmnI	GCTCC	3 cut(s)	298, 307, 421
Lsp1109I	GCAGC	2 cut(s)	2, 11
LweI	GCATC	2 cut(s)	211, 274
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	172, 376
MalI	GATC	2 cut(s)	6, 398
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	2 cut(s)	4, 396
MboII	GAAGA	3 cut(s)	31, 55, 283
MhlI	GDGCHC	2 cut(s)	303, 312
MluCI	AATT	2 cut(s)	210, 235
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	2 cut(s)	323, 383
MspI	CCGG	3 cut(s)	19, 414, 419
MspR9I	CCNGG	2 cut(s)	260, 415
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	6 cut(s)	21, 24, 30, 108, 307, 449
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	4, 396
NlaIII	CATG	3 cut(s)	70, 335, 403
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	2 cut(s)	172, 376
OliI	CACNNNNGTG	1 cut(s)	383
PaqCI	CACCTGC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	17, 26
PshAI	GACNNNNGTC	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	258
PspEI	GGTNACC	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	411, 416
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	462, 479
RsaNI	GTAC	2 cut(s)	461, 478
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	312
SatI	GCNGC	2 cut(s)	16, 25
Sau3AI	GATC	2 cut(s)	4, 396
Sau96I	GGNCC	2 cut(s)	411, 416
ScrFI	CCNGG	2 cut(s)	260, 415
SduI	GDGCHC	2 cut(s)	303, 312
SfaNI	GCATC	2 cut(s)	211, 274
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	210, 235
SsiI	CCGC	3 cut(s)	109, 290, 381
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	258, 413
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	355, 460, 477
TaiI	ACGT	1 cut(s)	174
TasI	AATT	2 cut(s)	210, 235
TscAI	CASTG	2 cut(s)	463, 480
TseFI	GTSAC	2 cut(s)	172, 376
TseI	GCWGC	2 cut(s)	15, 24
Tsp45I	GTSAC	2 cut(s)	172, 376
TspDTI	ATGAA	4 cut(s)	25, 55, 446, 474
TspRI	CASTG	2 cut(s)	463, 480
VpaK11BI	GGWCC	1 cut(s)	411
XapI	RAATTY	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.