Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Reverse (-)

32379193 .. 32379819

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGATCCAGGGGCGGCTGCTGCCAGTGCTGCTTCAGCTTCATCTTCACCGTCGGCCTCACCGCGCTCTTCATGTGGCTCAGCCTACGCACCTCCAAACCCAGCTGCTCCATCCAGTACTTTTACCTCCCTGCCCTCAACAAAACCCTAAACGACACCACAAACAAAACCCTCTACGTTTCCCTCTGGTTAAAAAACGGCAACAAGGACAAGGGCATTTACTACGATAACGTCAACCTCACCTTCAGCCTCCCCAACACCAGCAAGCCAGTAGGAAACGCAAACGTAACCAAGTTCTACCAGGGCCACAAGAAGAAGGCCCTCAAGCCGGTGGCGTTGGGGTCCGATAAGCTCAACTGGACGGCAGTTAATGGATCGGTTTATCCCAACGGGTCGACTTATTTCCGGGTGGATTTGGAGACGAAGGTGAGGTTCAAGATCATATTTTGGAGGACCAAGAGGCATAGGTTGAAGGTTGGGGCGGATGTGGAGGTCAACGCTTCGGGGACCAAAGTCAACAAGAAGGATATTAAGCTTTCTGCTGCAGATCATCAGCTTGCTTCTTATTCTGGGCAGCTCTGGGTTTTGCTCAATTTCTTGGTCTTCATTTTGCTCAATCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

209

Amino Acids

23.48

Weight (kDa)

9.86

Isoelectric Point (pI)

17.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	1 cut(s)	65
AciI	CCGC	3 cut(s)	15, 63, 482
AclWI	GGATC	2 cut(s)	13, 382
AcuI	CTGAAG	2 cut(s)	19, 229
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	436, 472
AjnI	CCWGG	2 cut(s)	8, 300
AluBI	AGCT	6 cut(s)	39, 105, 352, 535, 556, 577
AluI	AGCT	6 cut(s)	39, 105, 352, 535, 556, 577
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	13, 382
AoxI	GGCC	3 cut(s)	55, 304, 318
ApeKI	GCWGC	6 cut(s)	18, 21, 30, 105, 542, 574
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	5 cut(s)	304, 319, 342, 453, 507
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	4 cut(s)	40, 52, 232, 439
AvaII	GGWCC	3 cut(s)	342, 453, 507
BamHI	GGATCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	595
BbvI	GCAGC	6 cut(s)	5, 8, 17, 92, 529, 586
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	2 cut(s)	214, 378
BciT130I	CCWGG	2 cut(s)	10, 302
BcnI	CCSGG	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	413
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	7 cut(s)	16, 19, 22, 31, 106, 543, 575
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	7 cut(s)	17, 20, 23, 32, 107, 544, 576
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	3 cut(s)	10, 302, 407
Bme18I	GGWCC	3 cut(s)	342, 453, 507
BmgT120I	GGNCC	5 cut(s)	304, 319, 342, 453, 507
BmiI	GGNNCC	3 cut(s)	7, 343, 508
BmrFI	CCNGG	3 cut(s)	10, 302, 407
BoxI	GACNNNNGTC	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	595
Bpu1102I	GCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	9, 301, 620
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	4 cut(s)	25, 115, 269, 362
BseBI	CCWGG	2 cut(s)	10, 302
BseDI	CCNNGG	3 cut(s)	9, 301, 620
BseGI	GGATG	2 cut(s)	111, 490
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	4 cut(s)	25, 115, 269, 362
BseXI	GCAGC	6 cut(s)	5, 8, 17, 92, 529, 586
BseYI	CCCAGC	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	3 cut(s)	57, 306, 320
BsiSI	CCGG	2 cut(s)	329, 406
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	3 cut(s)	57, 306, 320
Bsp143I	GATC	4 cut(s)	5, 374, 438, 547
Bsp1720I	GCTNAGC	1 cut(s)	80
BspACI	CCGC	3 cut(s)	15, 63, 482
BspANI	GGCC	3 cut(s)	57, 306, 320
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	3 cut(s)	7, 343, 508
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	2 cut(s)	13, 382
BspQI	GCTCTTC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	4 cut(s)	25, 115, 269, 362
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	3 cut(s)	9, 301, 620
BssMI	GATC	4 cut(s)	5, 374, 438, 547
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	2 cut(s)	10, 302
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	266, 558
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	111, 490
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	4 cut(s)	8, 377, 441, 550
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	4 cut(s)	5, 374, 438, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 27, 30, 36
BstNI	CCWGG	2 cut(s)	10, 302
BstPAI	GACNNNNGTC	1 cut(s)	512
BstSCI	CCNGG	3 cut(s)	8, 300, 405
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	6 cut(s)	5, 8, 17, 92, 529, 586
BstV2I	GAAGAC	1 cut(s)	595
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	3 cut(s)	57, 306, 320
BtsCI	GGATG	2 cut(s)	111, 490
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	266, 558
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	5 cut(s)	304, 319, 342, 453, 507
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	73
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	4 cut(s)	7, 376, 440, 549
DpnII	GATC	4 cut(s)	5, 374, 438, 547
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	620
Eco47I	GGWCC	3 cut(s)	342, 453, 507
Eco57I	CTGAAG	2 cut(s)	19, 229
EcoO109I	RGGNCCY	1 cut(s)	319
EcoRII	CCWGG	2 cut(s)	8, 300
EcoT14I	CCWWGG	1 cut(s)	620
ErhI	CCWWGG	1 cut(s)	620
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	1 cut(s)	76
FaiI	YATR	3 cut(s)	74, 443, 465
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	7 cut(s)	16, 19, 22, 31, 106, 543, 575
FokI	GGATG	2 cut(s)	98, 497
Fsp4HI	GCNGC	7 cut(s)	16, 19, 22, 31, 106, 543, 575
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	7 cut(s)	16, 19, 22, 31, 106, 543, 575
GsaI	CCCAGC	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	57, 306, 320
HapII	CCGG	2 cut(s)	329, 406
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	4 cut(s)	235, 396, 496, 517
HindII	GTYRAC	4 cut(s)	235, 396, 496, 517
HindIII	AAGCTT	1 cut(s)	533
HpaII	CCGG	2 cut(s)	329, 406
HphI	GGTGA	4 cut(s)	40, 52, 232, 439
Hpy166II	GTNNAC	4 cut(s)	235, 396, 496, 517
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	4 cut(s)	235, 396, 496, 517
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	5 cut(s)	253, 310, 418, 466, 517
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	3 cut(s)	177, 231, 285
HpyCH4V	TGCA	1 cut(s)	545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 27, 30, 36
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	3 cut(s)	177, 231, 285
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	4 cut(s)	5, 374, 438, 547
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	6 cut(s)	5, 8, 17, 92, 529, 586
MaeII	ACGT	3 cut(s)	177, 231, 285
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	4 cut(s)	7, 376, 440, 549
MboI	GATC	4 cut(s)	5, 374, 438, 547
MboII	GAAGA	4 cut(s)	37, 61, 325, 595
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	1 cut(s)	592
MseI	TTAA	3 cut(s)	191, 369, 531
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	2 cut(s)	329, 406
MspR9I	CCNGG	3 cut(s)	10, 302, 407
MvaI	CCWGG	2 cut(s)	10, 302
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	21, 27, 30, 36
NciI	CCSGG	1 cut(s)	407
NdeII	GATC	4 cut(s)	5, 374, 438, 547
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	3 cut(s)	7, 343, 508
PciSI	GCTCTTC	1 cut(s)	74
PkrI	GCNGC	7 cut(s)	17, 20, 23, 32, 107, 544, 576
PshAI	GACNNNNGTC	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	8, 300
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	8, 300
PspN4I	GGNNCC	3 cut(s)	7, 343, 508
PspPI	GGNCC	5 cut(s)	304, 319, 342, 453, 507
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	5
PvuII	CAGCTG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SalI	GTCGAC	1 cut(s)	394
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	191, 369, 531
SatI	GCNGC	7 cut(s)	16, 19, 22, 31, 106, 543, 575
Sau3AI	GATC	4 cut(s)	5, 374, 438, 547
Sau96I	GGNCC	5 cut(s)	304, 319, 342, 453, 507
ScaI	AGTACT	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	10, 302, 407
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	3 cut(s)	342, 453, 507
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	1 cut(s)	592
SsiI	CCGC	3 cut(s)	15, 63, 482
StyD4I	CCNGG	3 cut(s)	8, 300, 405
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	3 cut(s)	180, 234, 288
TaqI	TCGA	1 cut(s)	395
TasI	AATT	1 cut(s)	592
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	3 cut(s)	191, 369, 531
Tru9I	TTAA	3 cut(s)	191, 369, 531
TscAI	CASTG	1 cut(s)	32
TseI	GCWGC	6 cut(s)	18, 21, 30, 105, 542, 574
TspDTI	ATGAA	3 cut(s)	31, 61, 595
TspRI	CASTG	1 cut(s)	32
VpaK11BI	GGWCC	3 cut(s)	342, 453, 507
XmiI	GTMKAC	1 cut(s)	395
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.