Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Forward (+)

29037280 .. 29037924

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1211100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGGGTCAATCAGAAGGGTGCTGCAGGTGCTGCTTCAGCTTCATATTCTCCCTCGGCCTCACAGCCCTCTTCCTGTGGCTGAGCCTCCGCACCTCCAACCCCAAGTGCACCATCCGCTCATTTTACCTTCCTGCCCTCAACGGGACCCTAAACGACACCAAAAACACCACCCTCTTCGTCACCCTCCGGCTCAAAAACACCAACAATGACAAGGGAATTTTCTACGACACCGTCAACCTCACCTTCCGGCTTCAGCCCAACGCCACCGCCAAGCCCGTATCAACTTCTGCTGTGCCCCGGTTCTACCAAGGCCACCAGAAAACGGCCACCAAGAACGTGGTCGTGGGCCCCCAGCAATGGCTTAACTGGACGGCGGTGTCCAGTGGGGTCCACCCCAATGGGAGTGTGAGTTTCAGGGTGGATTTGGCCACTGCTGTGAGGTTCAAGATCATGTTTTGGAAGACCAAGAGGCACAGGCTGAATGTTGGTGCTGACGTGCTGGTCAATGACTCCGGTGGGAAAGTCAACAAGAAGGATATCAAGCTCTCTGCCGCACCAGATCATCACCTGATTGGTTTCTTTTCTGGGCAGGTGGGGGTTTTGTCCAATTTCTGGGTTTTGATTTTGCTCAATTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

215

Amino Acids

23.77

Weight (kDa)

10.08

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	18, 583
AasI	GACNNNNNNGTC	2 cut(s)	379, 503
Acc36I	ACCTGC	2 cut(s)	18, 583
AccB7I	CCANNNNNTGG	1 cut(s)	615
AccBSI	CCGCTC	1 cut(s)	120
AciI	CCGC	6 cut(s)	5, 91, 118, 270, 377, 555
AcoI	YGGCCR	2 cut(s)	327, 429
AcsI	RAATTY	1 cut(s)	219
AcuI	CTGAAG	2 cut(s)	22, 239
AfiI	CCNNNNNNNGG	4 cut(s)	144, 325, 360, 615
AgsI	TTSAA	1 cut(s)	448
AjiI	CACGTC	1 cut(s)	499
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	2 cut(s)	42, 547
AluI	AGCT	2 cut(s)	42, 547
Alw21I	GWGCWC	1 cut(s)	113
Alw44I	GTGCAC	1 cut(s)	109
AlwNI	CAGNNNCTG	1 cut(s)	33
AoxI	GGCC	5 cut(s)	58, 313, 327, 349, 429
ApaI	GGGCCC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	24, 33
ApoI	RAATTY	1 cut(s)	219
AspS9I	GGNCC	4 cut(s)	147, 349, 350, 391
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	3 cut(s)	175, 235, 560
AvaII	GGWCC	2 cut(s)	147, 391
BaeGI	GKGCMC	3 cut(s)	113, 300, 353
BalI	TGGCCA	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	11, 20
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	2 cut(s)	342, 390
BcnI	CCSGG	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	25
BfuAI	ACCTGC	2 cut(s)	18, 583
BisI	GCNGC	3 cut(s)	25, 34, 555
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	3 cut(s)	26, 35, 556
Bme1390I	CCNGG	1 cut(s)	301
Bme18I	GGWCC	2 cut(s)	147, 391
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	4 cut(s)	147, 349, 350, 391
BmiI	GGNNCC	5 cut(s)	148, 149, 351, 352, 392
BmrFI	CCNGG	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	301
BsaJI	CCNNGG	3 cut(s)	55, 299, 310
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 325, 360, 615
Bse1I	ACTGG	2 cut(s)	374, 384
Bse3DI	GCAATG	1 cut(s)	365
BseDI	CCNNGG	3 cut(s)	55, 299, 310
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	4 cut(s)	144, 325, 360, 615
BseMI	GCAATG	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	2 cut(s)	374, 384
BseSI	GKGCMC	3 cut(s)	113, 300, 353
BseXI	GCAGC	2 cut(s)	11, 20
BseYI	CCCAGC	1 cut(s)	354
BshFI	GGCC	5 cut(s)	60, 315, 329, 351, 431
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	4 cut(s)	190, 250, 301, 516
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	4 cut(s)	144, 325, 360, 615
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	5 cut(s)	60, 315, 329, 351, 431
Bsp120I	GGGCCC	1 cut(s)	349
Bsp1286I	GDGCHC	3 cut(s)	113, 300, 353
Bsp143I	GATC	2 cut(s)	450, 562
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	6 cut(s)	5, 91, 118, 270, 377, 555
BspANI	GGCC	5 cut(s)	60, 315, 329, 351, 431
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	5 cut(s)	148, 149, 351, 352, 392
BspMAI	CTGCAG	1 cut(s)	29
BspMI	ACCTGC	2 cut(s)	18, 583
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	374, 384
BssECI	CCNNGG	3 cut(s)	55, 299, 310
BssMI	GATC	2 cut(s)	450, 562
BssT1I	CCWWGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	77, 182
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	2 cut(s)	453, 565
BstMBI	GATC	2 cut(s)	450, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 33, 39, 117
BstSCI	CCNGG	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	3 cut(s)	113, 300, 353
BstV1I	GCAGC	2 cut(s)	11, 20
BstV2I	GAAGAC	1 cut(s)	470
BstXI	CCANNNNNNTGG	2 cut(s)	340, 401
BsuRI	GGCC	5 cut(s)	60, 315, 329, 351, 431
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	391, 432
BveI	ACCTGC	2 cut(s)	18, 583
CaiI	CAGNNNCTG	1 cut(s)	33
Cfr13I	GGNCC	4 cut(s)	147, 349, 350, 391
CviAII	CATG	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	2 cut(s)	452, 564
DpnII	GATC	2 cut(s)	450, 562
DrdI	GACNNNNNNGTC	2 cut(s)	379, 503
DseDI	GACNNNNNNGTC	2 cut(s)	379, 503
EaeI	YGGCCR	2 cut(s)	327, 429
Eam1104I	CTCTTC	2 cut(s)	77, 182
EarI	CTCTTC	2 cut(s)	77, 182
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	2 cut(s)	147, 391
Eco57I	CTGAAG	2 cut(s)	22, 239
EcoO109I	RGGNCCY	2 cut(s)	147, 350
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	1 cut(s)	457
FaiI	YATR	2 cut(s)	47, 455
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	453
Fnu4HI	GCNGC	3 cut(s)	25, 34, 555
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	25, 34, 555
GluI	GCNGC	3 cut(s)	25, 34, 555
GsaI	CCCAGC	1 cut(s)	358
HaeIII	GGCC	5 cut(s)	60, 315, 329, 351, 431
HapII	CCGG	4 cut(s)	190, 250, 301, 516
Hin1II	CATG	1 cut(s)	457
HincII	GTYRAC	2 cut(s)	238, 529
HindII	GTYRAC	2 cut(s)	238, 529
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	4 cut(s)	190, 250, 301, 516
HphI	GGTGA	3 cut(s)	175, 235, 560
Hpy166II	GTNNAC	4 cut(s)	111, 238, 394, 529
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	4 cut(s)	111, 238, 394, 529
HpyAV	CCTTC	4 cut(s)	11, 140, 256, 529
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	339, 498
HpyCH4V	TGCA	2 cut(s)	27, 111
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 33, 39, 117
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	2 cut(s)	339, 498
Hsp92II	CATG	1 cut(s)	457
KflI	GGGWCCC	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	450, 562
Lsp1109I	GCAGC	2 cut(s)	11, 20
MaeII	ACGT	2 cut(s)	339, 498
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	452, 564
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	2 cut(s)	450, 562
MboII	GAAGA	3 cut(s)	64, 169, 475
MhlI	GDGCHC	3 cut(s)	113, 300, 353
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	3 cut(s)	219, 610, 634
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	2 cut(s)	399, 437
Msp20I	TGGCCA	1 cut(s)	431
MspI	CCGG	4 cut(s)	190, 250, 301, 516
MspR9I	CCNGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	4 cut(s)	30, 33, 39, 117
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	2 cut(s)	450, 562
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	5 cut(s)	148, 149, 351, 352, 392
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	437
PaqCI	CACCTGC	2 cut(s)	18, 583
PflFI	GACNNNGTC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	615
PkrI	GCNGC	3 cut(s)	26, 35, 556
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	354
PspN4I	GGNNCC	5 cut(s)	148, 149, 351, 352, 392
PspOMI	GGGCCC	1 cut(s)	349
PspPI	GGNCC	4 cut(s)	147, 349, 350, 391
PspPPI	RGGWCCY	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	33
PsyI	GACNNNGTC	1 cut(s)	233
RseI	CAYNNNNRTG	2 cut(s)	399, 437
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	3 cut(s)	25, 34, 555
Sau3AI	GATC	2 cut(s)	450, 562
Sau96I	GGNCC	4 cut(s)	147, 349, 350, 391
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	3 cut(s)	113, 300, 353
SfcI	CTRYAG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	147, 391
SmiMI	CAYNNNNRTG	2 cut(s)	399, 437
Sse9I	AATT	3 cut(s)	219, 610, 634
SsiI	CCGC	6 cut(s)	5, 91, 118, 270, 377, 555
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	342, 501
TasI	AATT	3 cut(s)	219, 610, 634
TauI	GCSGC	1 cut(s)	557
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	391, 439
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	24, 33
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	391, 439
Tth111I	GACNNNGTC	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	615
VneI	GTGCAC	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	147, 391
XapI	RAATTY	1 cut(s)	219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.