Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Forward (+)

17191889 .. 17193700

Gene Structure 1812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAGAGAAAAGAAATTAGTGAGTTTTAAGTTTAAAAATTCTAAAAACTCATTTTTTGTGTTTTTAAATAATATTCCTATGATAGATATTATGGAGAGAAACAAATATGTATCACACGGTTTCAAGAGGCACATTATGCCCTACTTTCTGAGCAATCAAGTTGCGCATCGACTTGAATCCTTGAGTAAGGGCATTTTACTTTATTATGAAAAGGGAGTGGTCTTATTCTACCAAATTTCTTGGAACCCTCCTTCAATCCTATTTTTAAATTGCTCAAAACACCCAACAACTTTTTTGATATTTTATATGAATTTTATTGAATTATATGGAAGAAGGTTGTTGTCTTTGGTGAGAATCGGACCTAAGACCTCTCACTTACAAATGAAAAGGAATACCGTTAGATCATATTTAAACTTTAAAAACTTGTTTGATAAGATTTGCATTAGTCTCTTGAGGTTAACACAAAAGCATACGCACTCGAGGAAGCAACATACAGCATATTGCCGAGTATATACCCACTTTAATAAAGATTATACAAAGACCACAGACTTAATAAAGATTAAACAAACACCAAGTGAAGTGACCAAGACCCAGATTCTCTCTCTTACCACAAATATGGCGGGTCAGTCGGAAGGGTGCTGCAGGTGCTGCTTCAGCTTCATATTCTCGCTCGGCCTCACAGCCCTCTTCATGTGGCTGAGCCTCCGCACCTCCAACCCCAAGTGCACCATCCGCTCATTTTACCTTCCTGCCCTCAACCGGACCCTAAACGACACCAAAAACACCACCCTCTTCGTCACCCTCCGCCTCAAAAACACCAACAATGACAAGGGAGTTTTCTACGACGCCGTCAACCTCACCTTCCGGCTTCAGCCCAACGCCACCGCCAAGCCCGTAGCAACTTCTGCTGTGCTCCGGTTCTACCAAGGCCACCAGAAGACGGCCACCAAGGACGTGGTCGTGGGCCCCCATCAGGGGCTCAACTGGACCGCGGTGTCCAGTGGGGTCCACCGCAATGGGAATGTGAGTTTCAGGGTGGATTTGGCCACTGCTGTGAGGTTCAAGATCGATGTTTTGGAAGACCAAGAGGCACCGGCTGAATGTTGGGAAGGATATCAAGCTCTCTGCCGCACCAGATCATCACCTGATTGGCTTCTTTTCTGGGCAGGTCGGGATTTTGTCCAATTTCTTGGTTTTGATTTTGCTCAATTTTTTGTGATTTATTTTTTATTTTTGATATCCCTTCCATTAAATTCTCTTAATCAATTAATTCGAATTTTTAAAATTTGGTCTAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

434

Amino Acids

50.33

Weight (kDa)

9.94

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	633
AasI	GACNNNNNNGTC	1 cut(s)	994
Acc16I	TGCGCA	1 cut(s)	165
Acc36I	ACCTGC	2 cut(s)	633, 1157
AccB1I	GGYRCC	1 cut(s)	1090
AccBSI	CCGCTC	1 cut(s)	735
AccII	CGCG	1 cut(s)	992
AciI	CCGC	9 cut(s)	620, 706, 733, 805, 885, 990, 992, 1012, 1129
AcoI	YGGCCR	2 cut(s)	942, 1044
AcsI	RAATTY	6 cut(s)	37, 234, 310, 1252, 1275, 1284
AcuI	CTGAAG	2 cut(s)	637, 854
AcyI	GRCGYC	1 cut(s)	846
AdeI	CACNNNGTG	1 cut(s)	575
AfiI	CCNNNNNNNGG	5 cut(s)	759, 940, 973, 974, 975
AgsI	TTSAA	5 cut(s)	124, 176, 255, 320, 1063
AjiI	CACGTC	1 cut(s)	955
AleI	CACNNNNGTG	1 cut(s)	1052
AluBI	AGCT	2 cut(s)	657, 1121
AluI	AGCT	2 cut(s)	657, 1121
Alw21I	GWGCWC	2 cut(s)	728, 915
Alw26I	GTCTC	1 cut(s)	452
Alw44I	GTGCAC	1 cut(s)	724
AlwNI	CAGNNNCTG	1 cut(s)	648
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	5 cut(s)	673, 928, 942, 964, 1044
ApaI	GGGCCC	1 cut(s)	968
ApaLI	GTGCAC	1 cut(s)	724
ApeKI	GCWGC	2 cut(s)	639, 648
ApoI	RAATTY	6 cut(s)	37, 234, 310, 1252, 1275, 1284
AseI	ATTAAT	1 cut(s)	1268
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	6 cut(s)	359, 762, 964, 965, 987, 1006
AsuHPI	GGTGA	4 cut(s)	361, 790, 850, 1134
AsuII	TTCGAA	1 cut(s)	1273
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	4 cut(s)	359, 762, 987, 1006
BaeGI	GKGCMC	2 cut(s)	728, 968
BalI	TGGCCA	1 cut(s)	1046
BanI	GGYRCC	1 cut(s)	1090
BanII	GRGCYC	2 cut(s)	968, 981
BbsI	GAAGAC	2 cut(s)	944, 1086
Bbv12I	GWGCWC	2 cut(s)	728, 915
BbvI	GCAGC	2 cut(s)	626, 635
BccI	CCATC	2 cut(s)	737, 978
BceAI	ACGGC	2 cut(s)	833, 957
BcoDI	GTCTC	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	640
BfuAI	ACCTGC	2 cut(s)	633, 1157
BisI	GCNGC	3 cut(s)	640, 649, 1129
BlpI	GCTNAGC	1 cut(s)	698
BlsI	GCNGC	3 cut(s)	641, 650, 1130
Bme18I	GGWCC	4 cut(s)	359, 762, 987, 1006
BmeT110I	CYCGRG	1 cut(s)	478
BmgBI	CACGTC	1 cut(s)	955
BmgT120I	GGNCC	6 cut(s)	359, 762, 964, 965, 987, 1006
BmiI	GGNNCC	6 cut(s)	245, 764, 966, 967, 1007, 1092
BmsI	GCATC	1 cut(s)	175
BpiI	GAAGAC	2 cut(s)	944, 1086
Bpu1102I	GCTNAGC	1 cut(s)	698
Bpu14I	TTCGAA	1 cut(s)	1273
BpuEI	CTTGAG	2 cut(s)	202, 472
Bsa29I	ATCGAT	1 cut(s)	1068
BsaHI	GRCGYC	1 cut(s)	846
BsaJI	CCNNGG	3 cut(s)	925, 948, 990
BsaWI	WCCGGW	2 cut(s)	759, 915
Bsc4I	CCNNNNNNNGG	5 cut(s)	759, 940, 973, 974, 975
Bse118I	RCCGGY	1 cut(s)	1093
Bse1I	ACTGG	2 cut(s)	989, 999
Bse3DI	GCAATG	1 cut(s)	1021
BseCI	ATCGAT	1 cut(s)	1068
BseDI	CCNNGG	3 cut(s)	925, 948, 990
BseGI	GGATG	1 cut(s)	729
BseLI	CCNNNNNNNGG	5 cut(s)	759, 940, 973, 974, 975
BseMI	GCAATG	1 cut(s)	1021
BseMII	CTCAG	2 cut(s)	140, 689
BseNI	ACTGG	2 cut(s)	989, 999
BseSI	GKGCMC	2 cut(s)	728, 968
BseXI	GCAGC	2 cut(s)	626, 635
Bsh1236I	CGCG	1 cut(s)	992
BshFI	GGCC	5 cut(s)	675, 930, 944, 966, 1046
BshNI	GGYRCC	1 cut(s)	1090
BshVI	ATCGAT	1 cut(s)	1068
BsiHKAI	GWGCWC	2 cut(s)	728, 915
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	4 cut(s)	760, 865, 916, 1094
BslI	CCNNNNNNNGG	5 cut(s)	759, 940, 973, 974, 975
BsmAI	GTCTC	1 cut(s)	452
BsnI	GGCC	5 cut(s)	675, 930, 944, 966, 1046
BsoBI	CYCGRG	1 cut(s)	478
Bsp119I	TTCGAA	1 cut(s)	1273
Bsp120I	GGGCCC	1 cut(s)	964
Bsp1286I	GDGCHC	4 cut(s)	728, 915, 968, 981
Bsp143I	GATC	3 cut(s)	401, 1065, 1136
Bsp1720I	GCTNAGC	1 cut(s)	698
BspACI	CCGC	9 cut(s)	620, 706, 733, 805, 885, 990, 992, 1012, 1129
BspANI	GGCC	5 cut(s)	675, 930, 944, 966, 1046
BspCNI	CTCAG	2 cut(s)	141, 690
BspDI	ATCGAT	1 cut(s)	1068
BspFNI	CGCG	1 cut(s)	992
BspLI	GGNNCC	6 cut(s)	245, 764, 966, 967, 1007, 1092
BspMAI	CTGCAG	1 cut(s)	644
BspMI	ACCTGC	2 cut(s)	633, 1157
BspT104I	TTCGAA	1 cut(s)	1273
BspT107I	GGYRCC	1 cut(s)	1090
BsrBI	CCGCTC	1 cut(s)	735
BsrDI	GCAATG	1 cut(s)	1021
BsrFI	RCCGGY	1 cut(s)	1093
BsrI	ACTGG	2 cut(s)	989, 999
BssAI	RCCGGY	1 cut(s)	1093
BssECI	CCNNGG	3 cut(s)	925, 948, 990
BssMI	GATC	3 cut(s)	401, 1065, 1136
BssNI	GRCGYC	1 cut(s)	846
BssT1I	CCWWGG	2 cut(s)	925, 948
Bst4CI	ACNGT	2 cut(s)	119, 397
Bst6I	CTCTTC	2 cut(s)	692, 797
BstACI	GRCGYC	1 cut(s)	846
BstAPI	GCANNNNNTGC	3 cut(s)	136, 648, 905
BstBI	TTCGAA	1 cut(s)	1273
BstDEI	CTNAG	3 cut(s)	149, 363, 698
BstDSI	CCRYGG	1 cut(s)	990
BstF5I	GGATG	1 cut(s)	729
BstFNI	CGCG	1 cut(s)	992
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	404, 1068, 1139
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	3 cut(s)	401, 1065, 1136
BstMWI	GCNNNNNNNGC	6 cut(s)	136, 645, 648, 654, 732, 905
BstSFI	CTRYAG	1 cut(s)	640
BstSLI	GKGCMC	2 cut(s)	728, 968
BstUI	CGCG	1 cut(s)	992
BstV1I	GCAGC	2 cut(s)	626, 635
BstV2I	GAAGAC	2 cut(s)	944, 1086
BstXI	CCANNNNNNTGG	4 cut(s)	616, 955, 1016, 1190
Bsu15I	ATCGAT	1 cut(s)	1068
BsuRI	GGCC	5 cut(s)	675, 930, 944, 966, 1046
BsuTUI	ATCGAT	1 cut(s)	1068
BtgI	CCRYGG	1 cut(s)	990
BtrI	CACGTC	1 cut(s)	955
BtsCI	GGATG	1 cut(s)	729
BtsI	GCAGTG	1 cut(s)	1047
BtsIMutI	CAGTG	2 cut(s)	1006, 1047
BveI	ACCTGC	2 cut(s)	633, 1157
CaiI	CAGNNNCTG	1 cut(s)	648
CfoI	GCGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	1093
Cfr13I	GGNCC	6 cut(s)	359, 762, 964, 965, 987, 1006
Cfr42I	CCGCGG	1 cut(s)	993
ClaI	ATCGAT	1 cut(s)	1068
CseI	GACGC	1 cut(s)	854
CviAII	CATG	1 cut(s)	691
DdeI	CTNAG	3 cut(s)	149, 363, 698
DpnI	GATC	3 cut(s)	403, 1067, 1138
DpnII	GATC	3 cut(s)	401, 1065, 1136
DraI	TTTAAA	6 cut(s)	34, 66, 267, 411, 418, 1282
DraIII	CACNNNGTG	1 cut(s)	575
DrdI	GACNNNNNNGTC	1 cut(s)	994
DseDI	GACNNNNNNGTC	1 cut(s)	994
EaeI	YGGCCR	2 cut(s)	942, 1044
Eam1104I	CTCTTC	2 cut(s)	692, 797
EarI	CTCTTC	2 cut(s)	692, 797
EciI	GGCGGA	1 cut(s)	794
Eco130I	CCWWGG	2 cut(s)	925, 948
Eco24I	GRGCYC	2 cut(s)	968, 981
Eco32I	GATATC	2 cut(s)	1115, 1239
Eco47I	GGWCC	4 cut(s)	359, 762, 987, 1006
Eco57I	CTGAAG	2 cut(s)	637, 854
Eco88I	CYCGRG	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	965
EcoRV	GATATC	2 cut(s)	1115, 1239
EcoT14I	CCWWGG	2 cut(s)	925, 948
EcoT38I	GRGCYC	2 cut(s)	968, 981
ErhI	CCWWGG	2 cut(s)	925, 948
FaeI	CATG	1 cut(s)	694
FatI	CATG	1 cut(s)	690
FauI	CCCGC	1 cut(s)	613
Fnu4HI	GCNGC	3 cut(s)	640, 649, 1129
FokI	GGATG	1 cut(s)	716
FriOI	GRGCYC	2 cut(s)	968, 981
Fsp4HI	GCNGC	3 cut(s)	640, 649, 1129
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	3 cut(s)	640, 649, 1129
HaeIII	GGCC	5 cut(s)	675, 930, 944, 966, 1046
HapII	CCGG	4 cut(s)	760, 865, 916, 1094
HgaI	GACGC	1 cut(s)	854
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	846
Hin1II	CATG	1 cut(s)	694
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	2 cut(s)	459, 853
HindII	GTYRAC	2 cut(s)	459, 853
HinfI	GANTC	3 cut(s)	176, 354, 595
HpaI	GTTAAC	1 cut(s)	459
HpaII	CCGG	4 cut(s)	760, 865, 916, 1094
HphI	GGTGA	4 cut(s)	361, 790, 850, 1134
Hpy166II	GTNNAC	4 cut(s)	459, 726, 853, 1009
Hpy188I	TCNGA	3 cut(s)	150, 359, 631
Hpy188III	TCNNGA	4 cut(s)	124, 451, 1063, 1172
Hpy8I	GTNNAC	4 cut(s)	459, 726, 853, 1009
Hpy99I	CGWCG	1 cut(s)	848
HpyAV	CCTTC	7 cut(s)	261, 327, 626, 755, 871, 1103, 1253
HpyCH4III	ACNGT	2 cut(s)	119, 397
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	3 cut(s)	441, 642, 726
HpyF10VI	GCNNNNNNNGC	6 cut(s)	136, 645, 648, 654, 732, 905
HpyF3I	CTNAG	3 cut(s)	149, 363, 698
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	1 cut(s)	846
Hsp92II	CATG	1 cut(s)	694
HspAI	GCGC	1 cut(s)	164
KspAI	GTTAAC	1 cut(s)	459
KspI	CCGCGG	1 cut(s)	993
Kzo9I	GATC	3 cut(s)	401, 1065, 1136
LmnI	GCTCC	1 cut(s)	918
Lsp1109I	GCAGC	2 cut(s)	626, 635
LweI	GCATC	1 cut(s)	175
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	2 cut(s)	580, 796
MalI	GATC	3 cut(s)	403, 1067, 1138
MbiI	CCGCTC	1 cut(s)	735
MboI	GATC	3 cut(s)	401, 1065, 1136
MboII	GAAGA	5 cut(s)	342, 679, 784, 949, 1091
MhlI	GDGCHC	4 cut(s)	728, 915, 968, 981
MlsI	TGGCCA	1 cut(s)	1046
MluNI	TGGCCA	1 cut(s)	1046
MmeI	TCCRAC	2 cut(s)	609, 738
Mox20I	TGGCCA	1 cut(s)	1046
MscI	TGGCCA	1 cut(s)	1046
MslI	CAYNNNNRTG	3 cut(s)	614, 1014, 1052
Msp20I	TGGCCA	1 cut(s)	1046
MspA1I	CMGCKG	1 cut(s)	992
MspI	CCGG	4 cut(s)	760, 865, 916, 1094
MvnI	CGCG	1 cut(s)	992
MwoI	GCNNNNNNNGC	6 cut(s)	136, 645, 648, 654, 732, 905
NdeII	GATC	3 cut(s)	401, 1065, 1136
NlaIII	CATG	1 cut(s)	694
NlaIV	GGNNCC	6 cut(s)	245, 764, 966, 967, 1007, 1092
NmeAIII	GCCGAG	2 cut(s)	530, 651
NmuCI	GTSAC	2 cut(s)	580, 796
NsbI	TGCGCA	1 cut(s)	165
NspV	TTCGAA	1 cut(s)	1273
OliI	CACNNNNGTG	1 cut(s)	1052
PaeR7I	CTCGAG	1 cut(s)	478
PaqCI	CACCTGC	1 cut(s)	633
PfeI	GAWTC	3 cut(s)	176, 354, 595
PflFI	GACNNNGTC	2 cut(s)	848, 956
PkrI	GCNGC	3 cut(s)	641, 650, 1130
PshBI	ATTAAT	1 cut(s)	1268
PspN4I	GGNNCC	6 cut(s)	245, 764, 966, 967, 1007, 1092
PspOMI	GGGCCC	1 cut(s)	964
PspPI	GGNCC	6 cut(s)	359, 762, 964, 965, 987, 1006
PspXI	VCTCGAGB	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	644
PstNI	CAGNNNCTG	1 cut(s)	648
PsyI	GACNNNGTC	2 cut(s)	848, 956
RseI	CAYNNNNRTG	3 cut(s)	614, 1014, 1052
SacII	CCGCGG	1 cut(s)	993
SatI	GCNGC	3 cut(s)	640, 649, 1129
Sau3AI	GATC	3 cut(s)	401, 1065, 1136
Sau96I	GGNCC	6 cut(s)	359, 762, 964, 965, 987, 1006
SduI	GDGCHC	4 cut(s)	728, 915, 968, 981
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	640
Sfr274I	CTCGAG	1 cut(s)	478
Sfr303I	CCGCGG	1 cut(s)	993
SfuI	TTCGAA	1 cut(s)	1273
SgrBI	CCGCGG	1 cut(s)	993
SinI	GGWCC	4 cut(s)	359, 762, 987, 1006
SlaI	CTCGAG	1 cut(s)	478
SmiMI	CAYNNNNRTG	3 cut(s)	614, 1014, 1052
SmlI	CTYRAG	3 cut(s)	181, 451, 478
SmoI	CTYRAG	3 cut(s)	181, 451, 478
SsiI	CCGC	9 cut(s)	620, 706, 733, 805, 885, 990, 992, 1012, 1129
SspI	AATATT	1 cut(s)	73
StyI	CCWWGG	2 cut(s)	925, 948
TaaI	ACNGT	2 cut(s)	119, 397
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	4 cut(s)	169, 479, 1068, 1273
TauI	GCSGC	1 cut(s)	1131
TfiI	GAWTC	3 cut(s)	176, 354, 595
TscAI	CASTG	2 cut(s)	1006, 1054
TseFI	GTSAC	2 cut(s)	580, 796
TseI	GCWGC	2 cut(s)	639, 648
Tsp45I	GTSAC	2 cut(s)	580, 796
TspDTI	ATGAA	5 cut(s)	222, 323, 398, 649, 679
TspRI	CASTG	2 cut(s)	1006, 1054
Tth111I	GACNNNGTC	2 cut(s)	848, 956
VneI	GTGCAC	1 cut(s)	724
VpaK11BI	GGWCC	4 cut(s)	359, 762, 987, 1006
VspI	ATTAAT	1 cut(s)	1268
XapI	RAATTY	6 cut(s)	37, 234, 310, 1252, 1275, 1284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	952
XhoI	CTCGAG	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.