Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Forward (+)

7196723 .. 7197391

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATCGAGATGATGCATGGGAATGGTTTGTTACAATCGTAGGCAGTCTAATGACTCTCCTCTATGTATCGTTTCTCCTGGCTTTATGTCTCTGGTTATCTACTTTGGTCCACCACATACCTAGATGCTCAATCCATTACTTTTACATTCCTGCCCTAAACAAATCCCTCATTTCATCAGACAACACCACTCTCAACTTCATGGTTCGTCTTAAAAACATCAACGCTAAACAAGGAATCTATTACGAAGACCTTCACTTATCTTTCTCCACACGTATCAACAACTCCTCTCTTCTTGTGGCTAACTACACAGTGCCAAGATTCTATCAAGGACACGAGAAGAAGGCCAAGAAGTGGGGACAGGCCTTGCCTTTTAACAACCAGACGGTTATTCAAGCGGTTTTACCTAATGGCTCGGCGATTTTTCGTGTGGATTTGAAGATGCAGGTGAAATACAAAGTCATGTCCTGGAAAACAAAGAGGTACAAATTAAAGGCTAGTGTGAATCTTGAAGTCAACGAGGATGGAGCCACTAAAGTCAAGGACAAAGAGGATGGGATTAAGATGAAGATATCAGATTCGTCTCCACAACGACTAACATTTTTCCAAGTTTGCTTTTCGATTATTTGTGTTTTGATGAATTGGCTCATCTTCTTGGCTATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

222

Amino Acids

25.73

Weight (kDa)

9.59

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	354
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	354
AflIII	ACRYGT	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	395, 439, 512
AjnI	CCWGG	2 cut(s)	78, 467
Alw26I	GTCTC	2 cut(s)	95, 588
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	345, 363
Asp700I	GAANNNNTTC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	109
BauI	CACGAG	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	255
BccI	CCATC	2 cut(s)	518, 548
BciT130I	CCWGG	2 cut(s)	80, 469
BcoDI	GTCTC	2 cut(s)	95, 588
BfaI	CTAG	2 cut(s)	123, 498
BfuAI	ACCTGC	1 cut(s)	436
Bme1390I	CCNGG	2 cut(s)	80, 469
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	2 cut(s)	80, 469
BmsI	GCATC	3 cut(s)	4, 116, 432
BpiI	GAAGAC	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	80, 469
BseGI	GGATG	2 cut(s)	529, 559
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseRI	GAGGAG	2 cut(s)	50, 277
BshFI	GGCC	2 cut(s)	347, 365
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	2 cut(s)	95, 588
BsmBI	CGTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	347, 365
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	2 cut(s)	347, 365
BspLI	GGNNCC	1 cut(s)	529
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	1 cut(s)	12
BssMI	GATC	1 cut(s)	4
BssSI	CACGAG	1 cut(s)	335
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	80, 469
Bst4CI	ACNGT	2 cut(s)	313, 388
Bst6I	CTCTTC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	529, 559
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	95, 588
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	2 cut(s)	80, 469
BstSCI	CCNGG	2 cut(s)	78, 467
BstV2I	GAAGAC	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	347, 365
BtsCI	GGATG	2 cut(s)	529, 559
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	3 cut(s)	18, 202, 463
CviJI	RGCY	9 cut(s)	83, 302, 347, 365, 414, 497, 530, 646, 659
CviKI_1	RGCY	9 cut(s)	83, 302, 347, 365, 414, 497, 530, 646, 659
CviQI	GTAC	1 cut(s)	484
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	365
Eco32I	GATATC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	78, 467
EcoRV	GATATC	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	588
FaeI	CATG	3 cut(s)	21, 205, 466
FaiI	YATR	6 cut(s)	19, 66, 88, 119, 203, 464
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	3 cut(s)	17, 201, 462
FokI	GGATG	2 cut(s)	536, 566
FspBI	CTAG	2 cut(s)	123, 498
HaeIII	GGCC	2 cut(s)	347, 365
Hin1II	CATG	3 cut(s)	21, 205, 466
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	5 cut(s)	55, 237, 321, 505, 578
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	2 cut(s)	112, 517
Hpy188I	TCNGA	2 cut(s)	181, 577
Hpy188III	TCNNGA	2 cut(s)	8, 509
Hpy8I	GTNNAC	2 cut(s)	112, 517
HpyAV	CCTTC	2 cut(s)	263, 337
HpyCH4III	ACNGT	2 cut(s)	313, 388
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	17, 445
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	3 cut(s)	21, 205, 466
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	527
LpnPI	CCDG	9 cut(s)	65, 79, 92, 165, 347, 395, 431, 454, 481
LweI	GCATC	3 cut(s)	4, 116, 432
MaeI	CTAG	2 cut(s)	123, 498
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	6 cut(s)	260, 284, 352, 451, 580, 643
MluCI	AATT	2 cut(s)	488, 640
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	6 cut(s)	71, 179, 298, 474, 514, 544
Mph1103I	ATGCAT	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	5 cut(s)	213, 375, 491, 561, 667
MslI	CAYNNNNRTG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	80, 469
MvaI	CCWGG	2 cut(s)	80, 469
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	21, 205, 466
NlaIV	GGNNCC	1 cut(s)	529
NmeAIII	GCCGAG	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	19
PaqCI	CACCTGC	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	4 cut(s)	237, 321, 505, 578
PflMI	CCANNNNNTGG	1 cut(s)	354
PfoI	TCCNGGA	1 cut(s)	467
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	78, 467
PspGI	CCWGG	2 cut(s)	78, 467
PspN4I	GGNNCC	1 cut(s)	529
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	5 cut(s)	213, 375, 491, 561, 667
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	80, 469
SetI	ASST	6 cut(s)	124, 255, 277, 409, 450, 485
SfaNI	GCATC	3 cut(s)	4, 116, 432
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	488, 640
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	2 cut(s)	123, 498
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	2 cut(s)	78, 467
TaaI	ACNGT	2 cut(s)	313, 388
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	7, 620
TasI	AATT	2 cut(s)	488, 640
TfiI	GAWTC	4 cut(s)	237, 321, 505, 578
Tru1I	TTAA	5 cut(s)	213, 375, 491, 561, 667
Tru9I	TTAA	5 cut(s)	213, 375, 491, 561, 667
TscAI	CASTG	1 cut(s)	318
TspDTI	ATGAA	4 cut(s)	165, 190, 581, 653
TspRI	CASTG	1 cut(s)	318
Van91I	CCANNNNNTGG	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	123, 498
Zsp2I	ATGCAT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.