Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Reverse (-)

12730322 .. 12730960

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G204400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAGAATCAGGCGGCTGCTGCCGGTGCTGCTTCAGCTTCATCTTCACTCTTGGCCTCACAGCCCTCTTCATGTGGCTCAGCCTTCGCACCTCAAAACCCACCTGCAAAGTCCGCTCATTATACATTCCTGCCCTCAACAAGACCCTAAACGACACCACAAACAAGACCCTTTACGTCACCCTCAGGCTGGAGAACGGCAACAAGGACAAGGGAATTTACTACGATGCCATCAACCTCAATTTCACTCTGCCCAACGCCACTAAGCCCATAGCTACTGCTGTTGTGTCCAGCTTCTACCAGGGGCATCAGAAGAAGGCCACAAAGGCTGCGGTTGGGGAGCCCAAGGAGCTCAACTGGACAGCTGTCTCCCATGCAACCTACTCTAATGGGACTGTGCATTTCAGGGTGGATTTGGTCACCGCTGTGAGGTTCAAGATCATGTTCTGGAGGACCAAGAGGCGCAGGTTGATGGTTAGGGCAGATGTGGTGGTCAACGACTCTGGGGGTTACGTCAACCCCAAGAACAAGAAGGATATCAAGCTCTCTGCTGCACCAGATCATCAGATGATTAAGTGCCTTCTTGGGCAGGTGGGGGTTTTTGCCAATTTGTTGGTCTTGATTTTGCTCAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

213

Amino Acids

23.68

Weight (kDa)

9.87

Isoelectric Point (pI)

23.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	113, 580
Acc36I	ACCTGC	3 cut(s)	113, 456, 580
AccBSI	CCGCTC	1 cut(s)	117
AciI	CCGC	4 cut(s)	15, 115, 332, 423
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	190, 429
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	300
AleI	CACNNNNGTG	1 cut(s)	425
AluBI	AGCT	6 cut(s)	39, 275, 294, 352, 365, 544
AluI	AGCT	6 cut(s)	39, 275, 294, 352, 365, 544
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	373
AoxI	GGCC	2 cut(s)	55, 318
ApeKI	GCWGC	5 cut(s)	18, 21, 30, 329, 551
ApoI	RAATTY	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	172, 412
AvaII	GGWCC	1 cut(s)	453
AxyI	CCTNAGG	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	345, 354
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	5 cut(s)	5, 8, 17, 316, 538
BccI	CCATC	2 cut(s)	239, 466
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	373
BfuAI	ACCTGC	3 cut(s)	113, 456, 580
BglI	GCCNNNNNGGC	1 cut(s)	326
BisI	GCNGC	6 cut(s)	16, 19, 22, 31, 330, 552
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	6 cut(s)	17, 20, 23, 32, 331, 553
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	2 cut(s)	217, 316
BoxI	GACNNNNGTC	1 cut(s)	365
BpmI	CTGGAG	2 cut(s)	212, 469
Bpu1102I	GCTNAGC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	301, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 429
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	362
Bse21I	CCTNAGG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	301, 345
BseLI	CCNNNNNNNGG	2 cut(s)	190, 429
BseMII	CTCAG	2 cut(s)	94, 199
BseNI	ACTGG	1 cut(s)	362
BseXI	GCAGC	5 cut(s)	5, 8, 17, 316, 538
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	57, 320
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	190, 429
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	2 cut(s)	57, 320
Bsp1286I	GDGCHC	2 cut(s)	345, 354
Bsp143I	GATC	2 cut(s)	438, 559
Bsp1720I	GCTNAGC	1 cut(s)	80
BspACI	CCGC	4 cut(s)	15, 115, 332, 423
BspANI	GGCC	2 cut(s)	57, 320
BspCNI	CTCAG	2 cut(s)	93, 198
BspLI	GGNNCC	1 cut(s)	342
BspMI	ACCTGC	3 cut(s)	113, 456, 580
BsrBI	CCGCTC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	301, 345
BssMI	GATC	2 cut(s)	438, 559
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	80, 185, 264
BstEII	GGTNACC	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	2 cut(s)	441, 562
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	2 cut(s)	438, 559
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 27, 30, 36, 114, 326, 349
BstNI	CCWGG	1 cut(s)	302
BstPAI	GACNNNNGTC	1 cut(s)	365
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	300
BstV1I	GCAGC	5 cut(s)	5, 8, 17, 316, 538
BstXI	CCANNNNNNTGG	1 cut(s)	613
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	57, 320
BveI	ACCTGC	3 cut(s)	113, 456, 580
CfoI	GCGC	1 cut(s)	465
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	453
CviAII	CATG	3 cut(s)	73, 374, 442
DdeI	CTNAG	3 cut(s)	80, 185, 264
DpnI	GATC	2 cut(s)	440, 561
DpnII	GATC	2 cut(s)	438, 559
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	2 cut(s)	345, 354
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	19
Eco81I	CCTNAGG	1 cut(s)	185
Eco91I	GGTNACC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	352
EcoO65I	GGTNACC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	300
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	2 cut(s)	345, 354
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	3 cut(s)	76, 377, 445
FaiI	YATR	5 cut(s)	74, 124, 272, 375, 443
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	3 cut(s)	72, 373, 441
Fnu4HI	GCNGC	6 cut(s)	16, 19, 22, 31, 330, 552
FriOI	GRGCYC	2 cut(s)	345, 354
Fsp4HI	GCNGC	6 cut(s)	16, 19, 22, 31, 330, 552
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	6 cut(s)	16, 19, 22, 31, 330, 552
GsuI	CTGGAG	2 cut(s)	212, 469
HaeIII	GGCC	2 cut(s)	57, 320
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	3 cut(s)	76, 377, 445
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	2 cut(s)	496, 517
HindII	GTYRAC	2 cut(s)	496, 517
HinfI	GANTC	2 cut(s)	8, 500
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	2 cut(s)	172, 412
Hpy166II	GTNNAC	2 cut(s)	496, 517
Hpy188I	TCNGA	2 cut(s)	312, 567
Hpy188III	TCNNGA	3 cut(s)	436, 448, 619
Hpy8I	GTNNAC	2 cut(s)	496, 517
HpyAV	CCTTC	4 cut(s)	95, 310, 526, 590
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	2 cut(s)	177, 513
HpyCH4V	TGCA	4 cut(s)	108, 377, 400, 554
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 27, 30, 36, 114, 326, 349
HpyF3I	CTNAG	3 cut(s)	80, 185, 264
HpySE526I	ACGT	2 cut(s)	177, 513
Hsp92II	CATG	3 cut(s)	76, 377, 445
HspAI	GCGC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	438, 559
LmnI	GCTCC	2 cut(s)	340, 349
Lsp1109I	GCAGC	5 cut(s)	5, 8, 17, 316, 538
LweI	GCATC	2 cut(s)	217, 316
MaeII	ACGT	2 cut(s)	177, 513
MaeIII	GTNAC	3 cut(s)	178, 418, 509
MalI	GATC	2 cut(s)	440, 561
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	2 cut(s)	438, 559
MboII	GAAGA	3 cut(s)	37, 61, 325
MhlI	GDGCHC	2 cut(s)	345, 354
MluCI	AATT	4 cut(s)	216, 241, 607, 631
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	9 cut(s)	68, 77, 103, 146, 194, 248, 423, 444, 453
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	2 cut(s)	365, 425
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	7 cut(s)	21, 27, 30, 36, 114, 326, 349
NdeII	GATC	2 cut(s)	438, 559
NlaIII	CATG	3 cut(s)	76, 377, 445
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	2 cut(s)	178, 418
OliI	CACNNNNGTG	1 cut(s)	425
PaqCI	CACCTGC	2 cut(s)	113, 580
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	6 cut(s)	17, 20, 23, 32, 331, 553
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PshAI	GACNNNNGTC	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	300
PspEI	GGTNACC	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	453
PvuII	CAGCTG	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	6 cut(s)	16, 19, 22, 31, 330, 552
Sau3AI	GATC	2 cut(s)	438, 559
Sau96I	GGNCC	1 cut(s)	453
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	2 cut(s)	345, 354
SfaNI	GCATC	2 cut(s)	217, 316
SinI	GGWCC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	425
Sse9I	AATT	4 cut(s)	216, 241, 607, 631
SsiI	CCGC	4 cut(s)	15, 115, 332, 423
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	2 cut(s)	180, 516
TasI	AATT	4 cut(s)	216, 241, 607, 631
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TseFI	GTSAC	2 cut(s)	178, 418
TseI	GCWGC	5 cut(s)	18, 21, 30, 329, 551
Tsp45I	GTSAC	2 cut(s)	178, 418
TspDTI	ATGAA	2 cut(s)	31, 61
VpaK11BI	GGWCC	1 cut(s)	453
XapI	RAATTY	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.