Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Reverse (-)

14946759 .. 14948097

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGGGATCCTCAGGCGGCGGCTGCTGCCAATGCTGCATCAGCTTCATCTTCACCGTCGGCCTCACCGCCCTCTTCATGTGGCTCAGCCTACGTACCTCCAATCCCAGCTGCTCCATCAAGTACTTCTACCTCCCTGCCCTCAACAAAACCCTAAACGACACCGGAAACAGAACCCTTTACGTCTCCCTCGCGTTAAACAACGGCAACAAAGACAAGGGGATCTACTACGACACCATCAACCTCACCTTCAGCCTCCCCAACAGCAACACCACCAAGCCAGTAGTAGGCAACGCAAATGTCACCAAGTTCTACCAGGGCCACAAGAAGAAGGCCACCAAGAAGGTGGAGTTGGGGTCCGACAAGCTCAACTGGACGGCGGTTTCCGGGTCGGTTTATGCCAACGGGTCGAGTCATTTCCGGGTGGATTTGGTGACGGCGGTGAGGTTTAAGATCATATTCTGGAGGACCAAGAGGCATAGGTTGATGGTTGGGGCGGATGTGGAGGTCAACGCTTCAGGTACCAAAGTCAACAAGAAGGATATTAAGCTTTCTGCTGCAGATCATCAGCTTGCTGCTTATTCTGGCCAGCTCTGGGTTTTGCTCAATTTCTTGGTTTTCATTTTGCTCAATCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

214

Amino Acids

23.55

Weight (kDa)

9.77

Isoelectric Point (pI)

17.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	521
AccII	CGCG	1 cut(s)	194
AciI	CCGC	7 cut(s)	5, 18, 21, 69, 380, 440, 497
AclWI	GGATC	3 cut(s)	3, 16, 230
AcoI	YGGCCR	1 cut(s)	586
AcuI	CTGAAG	2 cut(s)	235, 501
AfaI	GTAC	3 cut(s)	97, 125, 523
AfiI	CCNNNNNNNGG	2 cut(s)	287, 595
AjnI	CCWGG	1 cut(s)	315
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	6 cut(s)	45, 111, 367, 550, 571, 592
AluI	AGCT	6 cut(s)	45, 111, 367, 550, 571, 592
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	3, 16, 230
AoxI	GGCC	4 cut(s)	61, 319, 333, 586
ApeKI	GCWGC	6 cut(s)	24, 27, 36, 111, 557, 575
Asp718I	GGTACC	1 cut(s)	521
AspS9I	GGNCC	3 cut(s)	319, 357, 468
AsuC2I	CCSGG	2 cut(s)	388, 422
AsuHPI	GGTGA	6 cut(s)	46, 58, 238, 295, 445, 454
AvaII	GGWCC	2 cut(s)	357, 468
AxyI	CCTNAGG	1 cut(s)	13
BaeI	ACNNNNGTAYC	2 cut(s)	513, 546
BalI	TGGCCA	1 cut(s)	588
BamHI	GGATCC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	521
BbvI	GCAGC	6 cut(s)	11, 14, 23, 98, 544, 562
BccI	CCATC	3 cut(s)	125, 245, 481
BceAI	ACGGC	3 cut(s)	220, 393, 453
BciT130I	CCWGG	1 cut(s)	317
BcnI	CCSGG	2 cut(s)	388, 422
BcoDI	GTCTC	1 cut(s)	190
BfmI	CTRYAG	1 cut(s)	558
BisI	GCNGC	8 cut(s)	19, 22, 25, 28, 37, 112, 558, 576
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	8 cut(s)	20, 23, 26, 29, 38, 113, 559, 577
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	3 cut(s)	317, 388, 422
Bme18I	GGWCC	2 cut(s)	357, 468
BmgT120I	GGNCC	3 cut(s)	319, 357, 468
BmiI	GGNNCC	3 cut(s)	10, 358, 523
BmrFI	CCNGG	3 cut(s)	317, 388, 422
BmsI	GCATC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	484
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	388, 422
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	316, 635
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 595
Bse1I	ACTGG	2 cut(s)	281, 377
Bse21I	CCTNAGG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	316, 635
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	2 cut(s)	287, 595
BseMII	CTCAG	2 cut(s)	27, 100
BseNI	ACTGG	2 cut(s)	281, 377
BseXI	GCAGC	6 cut(s)	11, 14, 23, 98, 544, 562
BseYI	CCCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	4 cut(s)	63, 321, 335, 588
BshNI	GGYRCC	1 cut(s)	521
BsiSI	CCGG	3 cut(s)	165, 387, 421
BslI	CCNNNNNNNGG	2 cut(s)	287, 595
BsmAI	GTCTC	1 cut(s)	190
BsmBI	CGTCTC	1 cut(s)	190
BsnI	GGCC	4 cut(s)	63, 321, 335, 588
Bsp143I	GATC	4 cut(s)	8, 222, 453, 562
Bsp1720I	GCTNAGC	1 cut(s)	86
BspACI	CCGC	7 cut(s)	5, 18, 21, 69, 380, 440, 497
BspANI	GGCC	4 cut(s)	63, 321, 335, 588
BspCNI	CTCAG	2 cut(s)	26, 99
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	3 cut(s)	10, 358, 523
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	3 cut(s)	3, 16, 230
BspT107I	GGYRCC	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	281, 377
BssECI	CCNNGG	2 cut(s)	316, 635
BssMI	GATC	4 cut(s)	8, 222, 453, 562
BssT1I	CCWWGG	1 cut(s)	635
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	573, 590
BstDEI	CTNAG	2 cut(s)	13, 86
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	194
BstKTI	GATC	4 cut(s)	11, 225, 456, 565
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	4 cut(s)	8, 222, 453, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 27, 33, 36, 42
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	315, 386, 420
BstSFI	CTRYAG	1 cut(s)	558
BstSNI	TACGTA	1 cut(s)	95
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	6 cut(s)	11, 14, 23, 98, 544, 562
BstX2I	RGATCY	2 cut(s)	8, 222
BstXI	CCANNNNNNTGG	1 cut(s)	346
BstYI	RGATCY	2 cut(s)	8, 222
Bsu36I	CCTNAGG	1 cut(s)	13
BsuRI	GGCC	4 cut(s)	63, 321, 335, 588
BtsCI	GGATG	1 cut(s)	505
Cac8I	GCNNGC	2 cut(s)	573, 590
Cfr13I	GGNCC	3 cut(s)	319, 357, 468
Csp6I	GTAC	3 cut(s)	96, 124, 522
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	3 cut(s)	96, 124, 522
DdeI	CTNAG	2 cut(s)	13, 86
DpnI	GATC	4 cut(s)	10, 224, 455, 564
DpnII	GATC	4 cut(s)	8, 222, 453, 562
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	512
Eco105I	TACGTA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	635
Eco47I	GGWCC	2 cut(s)	357, 468
Eco57I	CTGAAG	2 cut(s)	235, 501
Eco81I	CCTNAGG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	635
ErhI	CCWWGG	1 cut(s)	635
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	1 cut(s)	82
FaiI	YATR	4 cut(s)	80, 399, 458, 480
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	8 cut(s)	19, 22, 25, 28, 37, 112, 558, 576
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	8 cut(s)	19, 22, 25, 28, 37, 112, 558, 576
GluI	GCNGC	8 cut(s)	19, 22, 25, 28, 37, 112, 558, 576
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	484
HaeIII	GGCC	4 cut(s)	63, 321, 335, 588
HapII	CCGG	3 cut(s)	165, 387, 421
Hin1II	CATG	1 cut(s)	82
HincII	GTYRAC	2 cut(s)	511, 532
HindII	GTYRAC	2 cut(s)	511, 532
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	3 cut(s)	165, 387, 421
HphI	GGTGA	6 cut(s)	46, 58, 238, 295, 445, 454
Hpy166II	GTNNAC	2 cut(s)	511, 532
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	2 cut(s)	511, 532
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	4 cut(s)	259, 325, 337, 532
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	2 cut(s)	94, 183
HpyCH4V	TGCA	2 cut(s)	39, 560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 27, 33, 36, 42
HpyF3I	CTNAG	2 cut(s)	13, 86
HpySE526I	ACGT	2 cut(s)	94, 183
Hsp92II	CATG	1 cut(s)	82
KpnI	GGTACC	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	8, 222, 453, 562
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	6 cut(s)	11, 14, 23, 98, 544, 562
LweI	GCATC	1 cut(s)	48
MaeII	ACGT	2 cut(s)	94, 183
MaeIII	GTNAC	2 cut(s)	301, 433
MalI	GATC	4 cut(s)	10, 224, 455, 564
MboI	GATC	4 cut(s)	8, 222, 453, 562
MboII	GAAGA	3 cut(s)	43, 67, 340
MflI	RGATCY	2 cut(s)	8, 222
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	1 cut(s)	607
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	384
Mox20I	TGGCCA	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	3 cut(s)	197, 450, 546
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	3 cut(s)	165, 387, 421
MspR9I	CCNGG	3 cut(s)	317, 388, 422
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	5 cut(s)	24, 27, 33, 36, 42
NciI	CCSGG	2 cut(s)	388, 422
NdeII	GATC	4 cut(s)	8, 222, 453, 562
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	3 cut(s)	10, 358, 523
NmuCI	GTSAC	2 cut(s)	301, 433
PkrI	GCNGC	8 cut(s)	20, 23, 26, 29, 38, 113, 559, 577
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
Ppu21I	YACGTR	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	3 cut(s)	10, 358, 523
PspPI	GGNCC	3 cut(s)	319, 357, 468
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	2 cut(s)	8, 222
PvuII	CAGCTG	1 cut(s)	111
RsaI	GTAC	3 cut(s)	97, 125, 523
RsaNI	GTAC	3 cut(s)	96, 124, 522
SaqAI	TTAA	3 cut(s)	197, 450, 546
SatI	GCNGC	8 cut(s)	19, 22, 25, 28, 37, 112, 558, 576
Sau3AI	GATC	4 cut(s)	8, 222, 453, 562
Sau96I	GGNCC	3 cut(s)	319, 357, 468
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	3 cut(s)	317, 388, 422
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	2 cut(s)	357, 468
SnaBI	TACGTA	1 cut(s)	95
Sse9I	AATT	1 cut(s)	607
SsiI	CCGC	7 cut(s)	5, 18, 21, 69, 380, 440, 497
StyD4I	CCNGG	3 cut(s)	315, 386, 420
StyI	CCWWGG	1 cut(s)	635
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	2 cut(s)	97, 186
TaqI	TCGA	1 cut(s)	410
TasI	AATT	1 cut(s)	607
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	2 cut(s)	21, 24
Tru1I	TTAA	3 cut(s)	197, 450, 546
Tru9I	TTAA	3 cut(s)	197, 450, 546
TseFI	GTSAC	2 cut(s)	301, 433
TseI	GCWGC	6 cut(s)	24, 27, 36, 111, 557, 575
Tsp45I	GTSAC	2 cut(s)	301, 433
TspDTI	ATGAA	3 cut(s)	37, 67, 610
VpaK11BI	GGWCC	2 cut(s)	357, 468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.