Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Forward (+)

17173976 .. 17175154

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCGACGTTTGTTAGGTTGTTTCTGTCTGTAATACTCGGCCATGCGACGAGTGAGATTGTTACAAGAGCGTATACATCGGTATACATCGGAATATCACGGAGGACTTTAACGAAGACCAAAATAATAGTTTTTCCAATCGTCTCTCTTTCGCACTCTACTCTCATAACTCTCTTCGCATTTCTCTCTCTAACCACAAACATGGCGGATCCATCGGGCGGGTTCTGCGGCCGCTGCTTCAGCTTCATATTCACCCTCGGCCTCACAGCCCTCTCCATGTGGCTGAGCCTCCGCACCTCCAACCCCAAGTGCACCATCCACTCATTTTACCCTCCTGCCCTCAATCGGACCCTAAACGACACCAAAAACACCACCCTCTTCGTCGCCCTCCGGCTCAAAAACACCAACAAGGACAAGGGAGTTTTCTACGACGCCGTCAACCTCACCTTCCGGCTTCAGCCCAACGCCGCCGCCAAGCCCATAGCAACTTCTTCTGTGCCCCGGTTCTACCAAGGCCACCAGAAAACGGCCACCAAGAACGTGGTCGTGGGCCCCCAAGAGGGGCTCAACTGGACCGCGGTGTCCAGTGCGGTCCACCCCAATGGGAGTGTGAATTTCAGGGTGGATTTGGCCACTGCTGTGAGGTTCAAGATCATTTTTTGGAAGACCAAGAGGCACAGGCTGAATGTTGGTGCTGACGTGCTGGTCAATGACTCCGGTGGGAAAGTCAACAAGAAGGATATCAAGCTCTCTGCTGCACCAGATCATCACCTGATTGGTTTCTTTTCTGGGCAGGTGGGGGTTTTGTCCAATTTCCTGGTTTTGATTTTGCTAAATTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

282

Amino Acids

30.94

Weight (kDa)

10.4

Isoelectric Point (pI)

26.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	784
AasI	GACNNNNNNGTC	2 cut(s)	580, 704
Acc36I	ACCTGC	1 cut(s)	784
AccI	GTMKAC	3 cut(s)	5, 74, 84
AccII	CGCG	1 cut(s)	578
AclWI	GGATC	2 cut(s)	203, 216
AcoI	YGGCCR	4 cut(s)	40, 229, 528, 630
AcsI	RAATTY	2 cut(s)	613, 835
AcuI	CTGAAG	2 cut(s)	223, 440
AcyI	GRCGYC	1 cut(s)	432
AfiI	CCNNNNNNNGG	6 cut(s)	218, 345, 526, 559, 560, 561
AgsI	TTSAA	1 cut(s)	649
AjiI	CACGTC	1 cut(s)	700
AjnI	CCWGG	1 cut(s)	816
AleI	CACNNNNGTG	1 cut(s)	638
AluBI	AGCT	2 cut(s)	243, 748
AluI	AGCT	2 cut(s)	243, 748
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	148
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	203, 216
AoxI	GGCC	7 cut(s)	40, 229, 259, 514, 528, 550, 630
ApaI	GGGCCC	1 cut(s)	554
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	234, 755
ApoI	RAATTY	2 cut(s)	613, 835
AspS9I	GGNCC	5 cut(s)	348, 550, 551, 573, 592
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	3 cut(s)	244, 436, 761
AvaII	GGWCC	3 cut(s)	348, 573, 592
BaeGI	GKGCMC	3 cut(s)	314, 501, 554
BalI	TGGCCA	1 cut(s)	632
BamHI	GGATCC	1 cut(s)	208
BanII	GRGCYC	2 cut(s)	554, 567
BbsI	GAAGAC	2 cut(s)	122, 671
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	221, 742
BccI	CCATC	2 cut(s)	220, 323
BceAI	ACGGC	2 cut(s)	419, 543
BciT130I	CCWGG	1 cut(s)	818
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	784
BisI	GCNGC	6 cut(s)	229, 232, 235, 468, 471, 756
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	6 cut(s)	230, 233, 236, 469, 472, 757
Bme1390I	CCNGG	2 cut(s)	502, 818
Bme18I	GGWCC	3 cut(s)	348, 573, 592
BmgBI	CACGTC	1 cut(s)	700
BmgT120I	GGNCC	5 cut(s)	348, 550, 551, 573, 592
BmiI	GGNNCC	4 cut(s)	210, 350, 552, 553
BmrFI	CCNGG	2 cut(s)	502, 818
BpiI	GAAGAC	2 cut(s)	122, 671
Bpu1102I	GCTNAGC	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	502
BsaHI	GRCGYC	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	256, 500, 511, 576
BsaWI	WCCGGW	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	6 cut(s)	218, 345, 526, 559, 560, 561
Bse1I	ACTGG	2 cut(s)	575, 585
BseBI	CCWGG	1 cut(s)	818
BseDI	CCNNGG	4 cut(s)	256, 500, 511, 576
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	6 cut(s)	218, 345, 526, 559, 560, 561
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	575, 585
BseSI	GKGCMC	3 cut(s)	314, 501, 554
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	221, 742
BsgI	GTGCAG	1 cut(s)	741
Bsh1236I	CGCG	1 cut(s)	578
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	7 cut(s)	42, 231, 261, 516, 530, 552, 632
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	4 cut(s)	391, 451, 502, 717
BslI	CCNNNNNNNGG	6 cut(s)	218, 345, 526, 559, 560, 561
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	7 cut(s)	42, 231, 261, 516, 530, 552, 632
Bsp120I	GGGCCC	1 cut(s)	550
Bsp1286I	GDGCHC	4 cut(s)	314, 501, 554, 567
Bsp143I	GATC	3 cut(s)	208, 651, 763
Bsp1720I	GCTNAGC	1 cut(s)	284
BspANI	GGCC	7 cut(s)	42, 231, 261, 516, 530, 552, 632
BspCNI	CTCAG	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	578
BspLI	GGNNCC	4 cut(s)	210, 350, 552, 553
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	2 cut(s)	203, 216
BsrI	ACTGG	2 cut(s)	575, 585
BssECI	CCNNGG	4 cut(s)	256, 500, 511, 576
BssMI	GATC	3 cut(s)	208, 651, 763
BssNAI	GTATAC	2 cut(s)	75, 85
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	511
Bst1107I	GTATAC	2 cut(s)	75, 85
Bst2UI	CCWGG	1 cut(s)	818
Bst6I	CTCTTC	2 cut(s)	179, 383
BstACI	GRCGYC	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	284
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	1 cut(s)	578
BstKTI	GATC	3 cut(s)	211, 654, 766
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	3 cut(s)	208, 651, 763
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 234, 240
BstNI	CCWGG	1 cut(s)	818
BstSCI	CCNGG	2 cut(s)	500, 816
BstSLI	GKGCMC	3 cut(s)	314, 501, 554
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	2 cut(s)	221, 742
BstV2I	GAAGAC	2 cut(s)	122, 671
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	4 cut(s)	202, 541, 602, 817
BstYI	RGATCY	1 cut(s)	208
BstZ17I	GTATAC	2 cut(s)	75, 85
BstZI	CGGCCG	1 cut(s)	229
BsuRI	GGCC	7 cut(s)	42, 231, 261, 516, 530, 552, 632
BtgI	CCRYGG	1 cut(s)	576
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	2 cut(s)	592, 633
BveI	ACCTGC	1 cut(s)	784
CciNI	GCGGCCGC	1 cut(s)	229
Cfr13I	GGNCC	5 cut(s)	348, 550, 551, 573, 592
Cfr42I	CCGCGG	1 cut(s)	579
CseI	GACGC	1 cut(s)	440
CviAII	CATG	3 cut(s)	44, 202, 277
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	3 cut(s)	210, 653, 765
DpnII	GATC	3 cut(s)	208, 651, 763
DrdI	GACNNNNNNGTC	2 cut(s)	580, 704
DseDI	GACNNNNNNGTC	2 cut(s)	580, 704
EaeI	YGGCCR	4 cut(s)	40, 229, 528, 630
EagI	CGGCCG	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	179, 383
EarI	CTCTTC	2 cut(s)	179, 383
EciI	GGCGGA	1 cut(s)	221
EclXI	CGGCCG	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	511
Eco24I	GRGCYC	2 cut(s)	554, 567
Eco32I	GATATC	1 cut(s)	742
Eco47I	GGWCC	3 cut(s)	348, 573, 592
Eco52I	CGGCCG	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	223, 440
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	816
EcoRV	GATATC	1 cut(s)	742
EcoT14I	CCWWGG	1 cut(s)	511
EcoT38I	GRGCYC	2 cut(s)	554, 567
ErhI	CCWWGG	1 cut(s)	511
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	3 cut(s)	47, 205, 280
FaiI	YATR	8 cut(s)	45, 75, 85, 167, 203, 248, 278, 482
FatI	CATG	3 cut(s)	43, 201, 276
FauI	CCCGC	1 cut(s)	212
FblI	GTMKAC	3 cut(s)	5, 74, 84
Fnu4HI	GCNGC	6 cut(s)	229, 232, 235, 468, 471, 756
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	2 cut(s)	554, 567
Fsp4HI	GCNGC	6 cut(s)	229, 232, 235, 468, 471, 756
GluI	GCNGC	6 cut(s)	229, 232, 235, 468, 471, 756
HaeIII	GGCC	7 cut(s)	42, 231, 261, 516, 530, 552, 632
HapII	CCGG	4 cut(s)	391, 451, 502, 717
HgaI	GACGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	47, 205, 280
HincII	GTYRAC	3 cut(s)	6, 439, 730
HindII	GTYRAC	3 cut(s)	6, 439, 730
HinfI	GANTC	1 cut(s)	713
HpaII	CCGG	4 cut(s)	391, 451, 502, 717
HphI	GGTGA	3 cut(s)	244, 436, 761
Hpy166II	GTNNAC	7 cut(s)	6, 75, 85, 312, 439, 595, 730
Hpy188I	TCNGA	2 cut(s)	92, 348
Hpy188III	TCNNGA	1 cut(s)	649
Hpy8I	GTNNAC	7 cut(s)	6, 75, 85, 312, 439, 595, 730
Hpy99I	CGWCG	4 cut(s)	10, 52, 386, 434
HpyAV	CCTTC	2 cut(s)	457, 730
HpyCH4IV	ACGT	3 cut(s)	8, 540, 699
HpyCH4V	TGCA	2 cut(s)	312, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 234, 240
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	3 cut(s)	8, 540, 699
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	47, 205, 280
KspI	CCGCGG	1 cut(s)	579
Kzo9I	GATC	3 cut(s)	208, 651, 763
Lsp1109I	GCAGC	2 cut(s)	221, 742
MaeII	ACGT	3 cut(s)	8, 540, 699
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	210, 653, 765
MboI	GATC	3 cut(s)	208, 651, 763
MboII	GAAGA	5 cut(s)	127, 166, 370, 483, 676
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	4 cut(s)	314, 501, 554, 567
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	3 cut(s)	613, 811, 835
MluNI	TGGCCA	1 cut(s)	632
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	3 cut(s)	200, 600, 638
Msp20I	TGGCCA	1 cut(s)	632
MspA1I	CMGCKG	2 cut(s)	234, 578
MspI	CCGG	4 cut(s)	391, 451, 502, 717
MspR9I	CCNGG	2 cut(s)	502, 818
MvaI	CCWGG	1 cut(s)	818
MvnI	CGCG	1 cut(s)	578
MwoI	GCNNNNNNNGC	3 cut(s)	225, 234, 240
NciI	CCSGG	1 cut(s)	502
NdeII	GATC	3 cut(s)	208, 651, 763
NlaIII	CATG	3 cut(s)	47, 205, 280
NlaIV	GGNNCC	4 cut(s)	210, 350, 552, 553
NmeAIII	GCCGAG	2 cut(s)	18, 237
NotI	GCGGCCGC	1 cut(s)	229
OliI	CACNNNNGTG	1 cut(s)	638
PaqCI	CACCTGC	1 cut(s)	784
PflFI	GACNNNGTC	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	230, 233, 236, 469, 472, 757
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
Psp6I	CCWGG	1 cut(s)	816
PspGI	CCWGG	1 cut(s)	816
PspN4I	GGNNCC	4 cut(s)	210, 350, 552, 553
PspOMI	GGGCCC	1 cut(s)	550
PspPI	GGNCC	5 cut(s)	348, 550, 551, 573, 592
PsuI	RGATCY	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	434
RseI	CAYNNNNRTG	3 cut(s)	200, 600, 638
SacII	CCGCGG	1 cut(s)	579
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	6 cut(s)	229, 232, 235, 468, 471, 756
Sau3AI	GATC	3 cut(s)	208, 651, 763
Sau96I	GGNCC	5 cut(s)	348, 550, 551, 573, 592
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	2 cut(s)	502, 818
SduI	GDGCHC	4 cut(s)	314, 501, 554, 567
Sfr303I	CCGCGG	1 cut(s)	579
SgrBI	CCGCGG	1 cut(s)	579
SinI	GGWCC	3 cut(s)	348, 573, 592
SmiMI	CAYNNNNRTG	3 cut(s)	200, 600, 638
Sse9I	AATT	3 cut(s)	613, 811, 835
StyD4I	CCNGG	2 cut(s)	500, 816
StyI	CCWWGG	1 cut(s)	511
TaiI	ACGT	3 cut(s)	11, 543, 702
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	613, 811, 835
TauI	GCSGC	4 cut(s)	231, 234, 470, 473
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	2 cut(s)	592, 640
TseI	GCWGC	2 cut(s)	234, 755
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	592, 640
Tth111I	GACNNNGTC	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	310
VpaK11BI	GGWCC	3 cut(s)	348, 573, 592
XapI	RAATTY	2 cut(s)	613, 835
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmiI	GTMKAC	3 cut(s)	5, 74, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.