Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Forward (+)

7194771 .. 7195769

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAATAATCAAAATGAAGACACAGAAGGTGGTCGAAACTGTTGTACTTGCTGCTTAAGCTTCATCTTCACAGCTGGTCTCACCTCTCTTTTCTTATGGCTTAGTCTCCGTGCGGACAAACCCAAATGCTCAATCCAAAACTTTTTCATTCCTGCCCTCGGAAAAGACCCAAATTCACGAGACAATACCACTCTAAATTTCATGGTTCGTTGTGACAATCCGAATAAAGACAAAGGAATCTACTACGACGATGTCCACCTTAATTTTTCCACCATCAACACGACCAAGATCAATTCATCTGCTCTTGTCTTAGTTGGTAACTACACAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGTAAAGCCGCTAAACAACCAGACGGTTTTACGAGCGGTTTTGCCTAATGGATCGGCTGTTTTCAGGTTGGATCTCAAGACTCAAGTTAGATTCAAGATTGTTTTTTGGAAAACTAAGAGGTATGGGGTTGAAGTTGGAGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTCAGAAGAAAGGAATTAAGATGAAGAAATCTGATTCTTCTTTTCCATTAAGAAGCTCTTTTCCGATTAGTGTTTTGATGAATTTACTCGTATTCTTTGCTATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

219

Amino Acids

24.67

Weight (kDa)

9.8

Isoelectric Point (pI)

22.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	369
AccBSI	CCGCTC	1 cut(s)	413
AciI	CCGC	3 cut(s)	113, 386, 413
AclWI	GGATC	2 cut(s)	436, 456
AcsI	RAATTY	3 cut(s)	172, 196, 631
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	158, 369
AflII	CTTAAG	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	472, 509, 527
AluBI	AGCT	5 cut(s)	60, 74, 518, 551, 606
AluI	AGCT	5 cut(s)	60, 74, 518, 551, 606
Alw26I	GTCTC	3 cut(s)	83, 110, 174
AlwI	GGATC	2 cut(s)	436, 456
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	3 cut(s)	172, 196, 631
AsuHPI	GGTGA	2 cut(s)	73, 548
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	281, 533
BcoDI	GTCTC	3 cut(s)	83, 110, 174
BfrI	CTTAAG	1 cut(s)	55
BisI	GCNGC	2 cut(s)	52, 386
BlsI	GCNGC	2 cut(s)	53, 387
BpiI	GAAGAC	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	437, 444
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 369
BseDI	CCNNGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	158, 369
BseMII	CTCAG	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	158, 369
BsmAI	GTCTC	3 cut(s)	83, 110, 174
BsnI	GGCC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	288, 428, 448
BspACI	CCGC	3 cut(s)	113, 386, 413
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	565
BspPI	GGATC	2 cut(s)	436, 456
BspTI	CTTAAG	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	288, 428, 448
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst4CI	ACNGT	4 cut(s)	41, 328, 403, 536
BstAFI	CTTAAG	1 cut(s)	55
BstDEI	CTNAG	5 cut(s)	101, 310, 333, 492, 552
BstKTI	GATC	3 cut(s)	291, 431, 451
BstMAI	GTCTC	3 cut(s)	83, 110, 174
BstMBI	GATC	3 cut(s)	288, 428, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	9 cut(s)	60, 74, 100, 362, 385, 434, 518, 551, 606
CviKI_1	RGCY	9 cut(s)	60, 74, 100, 362, 385, 434, 518, 551, 606
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	5 cut(s)	101, 310, 333, 492, 552
DpnI	GATC	3 cut(s)	290, 430, 450
DpnII	GATC	3 cut(s)	288, 428, 448
Eco31I	GGTCTC	1 cut(s)	83
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	97, 203, 501
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	52, 386
Fsp4HI	GCNGC	2 cut(s)	52, 386
GluI	GCNGC	2 cut(s)	52, 386
HaeIII	GGCC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	4 cut(s)	237, 457, 468, 584
HphI	GGTGA	2 cut(s)	73, 548
Hpy166II	GTNNAC	2 cut(s)	256, 532
Hpy188I	TCNGA	5 cut(s)	161, 222, 555, 583, 615
Hpy188III	TCNNGA	3 cut(s)	177, 454, 472
Hpy8I	GTNNAC	2 cut(s)	256, 532
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	20, 352
HpyCH4III	ACNGT	4 cut(s)	41, 328, 403, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	5 cut(s)	101, 310, 333, 492, 552
Hsp92II	CATG	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	288, 428, 448
LmnI	GCTCC	1 cut(s)	515
LpnPI	CCDG	4 cut(s)	60, 165, 410, 427
Lsp1109I	GCAGC	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	212, 317
MalI	GATC	3 cut(s)	290, 430, 450
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	3 cut(s)	288, 428, 448
MboII	GAAGA	6 cut(s)	29, 58, 367, 568, 579, 586
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	6 cut(s)	172, 196, 262, 292, 564, 631
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	2 cut(s)	426, 493
MnlI	CCTC	3 cut(s)	94, 167, 489
MseI	TTAA	6 cut(s)	56, 261, 546, 567, 599, 658
MspA1I	CMGCKG	1 cut(s)	74
MspCI	CTTAAG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	57
NdeII	GATC	3 cut(s)	288, 428, 448
NlaIII	CATG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	212
PfeI	GAWTC	3 cut(s)	237, 468, 584
PflFI	GACNNNGTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	53, 387
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	448
PsyI	GACNNNGTC	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	6 cut(s)	56, 261, 546, 567, 599, 658
SatI	GCNGC	2 cut(s)	52, 386
Sau3AI	GATC	3 cut(s)	288, 428, 448
SchI	GAGTC	1 cut(s)	451
SmlI	CTYRAG	3 cut(s)	55, 452, 459
SmoI	CTYRAG	3 cut(s)	55, 452, 459
Sse9I	AATT	6 cut(s)	172, 196, 262, 292, 564, 631
SsiI	CCGC	3 cut(s)	113, 386, 413
TaaI	ACNGT	4 cut(s)	41, 328, 403, 536
TaqI	TCGA	1 cut(s)	34
TasI	AATT	6 cut(s)	172, 196, 262, 292, 564, 631
TatI	WGTACW	1 cut(s)	44
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	3 cut(s)	237, 468, 584
Tru1I	TTAA	6 cut(s)	56, 261, 546, 567, 599, 658
Tru9I	TTAA	6 cut(s)	56, 261, 546, 567, 599, 658
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	8 cut(s)	17, 30, 52, 136, 190, 285, 587, 644
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	333
Tth111I	GACNNNGTC	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	369
Vha464I	CTTAAG	1 cut(s)	55
XapI	RAATTY	3 cut(s)	172, 196, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.