Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Forward (+)

61570295 .. 61570924

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGATCCAGCGGCGGCGGCTGCTGCCAGTGCTGCTTCAGCTTTATCTTCACCGTCGGCCTCACTGCGCTCTTCATGTGGCTCAGCCTACGCACCTCCAAACCCAGCTGCTCCGTCCAGTACTTTTACCTCCCTGCCCTGAACAAAACCCTAAACGACACCGGAAACAGAACCCTCTACGTTTCCCTCTGGTTAAAAAACGGCAACAAGGACAAGGGCATTTACTACGATAACGTCAACCTCAACTTCAGCCTCCCCAACACCAGCAAGCCAGTAGGAAACGCAAGCGTACCCAAGTTCTACCAGGGCCACAAGAAGAAGGCCCTCAAGAAGGTGGATTTGGGGTCCGATAAGCTCAACTGGACGGCCGTTTCTGGATCGGTTTATCCCAACGGGTCGACTTATTTCCGGGTGGATTTGGAGACGAAGGTGAGGTTCAAGATCTTATTTTGGAGGACCAAGAGGCATAAGCTGAAGGTTGGGGCGGATGTGGAGGTCAACGCGTCGGGGACCAAAGTCAACAAGAAGGATATTAAGCTTTCTGCTGCAGATCATCAGCTTGCTTCTTATTCTGGGCAGCTCTGGGTTTTGCTCAATTTCTTGGTCTTCATTTTGCTCAATCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

209

Amino Acids

23.44

Weight (kDa)

9.78

Isoelectric Point (pI)

17.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	398
AccII	CGCG	1 cut(s)	503
AciI	CCGC	4 cut(s)	12, 15, 18, 485
AclWI	GGATC	2 cut(s)	13, 385
AcoI	YGGCCR	1 cut(s)	366
AcuI	CTGAAG	3 cut(s)	22, 232, 494
AfaI	GTAC	2 cut(s)	122, 291
AfiI	CCNNNNNNNGG	1 cut(s)	331
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	7 cut(s)	42, 108, 355, 472, 538, 559, 580
AluI	AGCT	7 cut(s)	42, 108, 355, 472, 538, 559, 580
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	13, 385
AoxI	GGCC	4 cut(s)	58, 307, 321, 366
ApeKI	GCWGC	6 cut(s)	21, 24, 33, 108, 545, 577
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	5 cut(s)	307, 322, 345, 456, 510
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	43, 442
AvaII	GGWCC	3 cut(s)	345, 456, 510
BamHI	GGATCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	598
BbvI	GCAGC	6 cut(s)	8, 11, 20, 95, 532, 589
BceAI	ACGGC	3 cut(s)	217, 353, 381
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	546
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 34, 109, 546, 578
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 35, 110, 547, 579
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	305, 410
Bme18I	GGWCC	3 cut(s)	345, 456, 510
BmgT120I	GGNCC	5 cut(s)	307, 322, 345, 456, 510
BmiI	GGNNCC	3 cut(s)	7, 346, 511
BmrFI	CCNGG	2 cut(s)	305, 410
BoxI	GACNNNNGTC	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	598
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	304, 623
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	4 cut(s)	28, 118, 272, 365
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	304, 623
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	4 cut(s)	28, 118, 272, 365
BseX3I	CGGCCG	1 cut(s)	366
BseXI	GCAGC	6 cut(s)	8, 11, 20, 95, 532, 589
BseYI	CCCAGC	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	4 cut(s)	60, 309, 323, 368
BsiEI	CGRYCG	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	162, 409
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	416
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	4 cut(s)	60, 309, 323, 368
Bsp143I	GATC	4 cut(s)	5, 377, 441, 550
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	4 cut(s)	12, 15, 18, 485
BspANI	GGCC	4 cut(s)	60, 309, 323, 368
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	3 cut(s)	7, 346, 511
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	2 cut(s)	13, 385
BspQI	GCTCTTC	1 cut(s)	77
BsrI	ACTGG	4 cut(s)	28, 118, 272, 365
BssECI	CCNNGG	2 cut(s)	304, 623
BssMI	GATC	4 cut(s)	5, 377, 441, 550
BssT1I	CCWWGG	1 cut(s)	623
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	269, 286, 561
BstDEI	CTNAG	1 cut(s)	83
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	4 cut(s)	8, 380, 444, 553
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	5, 377, 441, 550
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 21, 24, 30, 33, 39
BstNI	CCWGG	1 cut(s)	305
BstPAI	GACNNNNGTC	1 cut(s)	515
BstSCI	CCNGG	2 cut(s)	303, 408
BstSFI	CTRYAG	1 cut(s)	546
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	6 cut(s)	8, 11, 20, 95, 532, 589
BstV2I	GAAGAC	1 cut(s)	598
BstX2I	RGATCY	2 cut(s)	5, 441
BstYI	RGATCY	2 cut(s)	5, 441
BstZI	CGGCCG	1 cut(s)	366
BsuRI	GGCC	4 cut(s)	60, 309, 323, 368
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	35, 63
Cac8I	GCNNGC	3 cut(s)	269, 286, 561
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	5 cut(s)	307, 322, 345, 456, 510
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	121, 290
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	2 cut(s)	121, 290
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	4 cut(s)	7, 379, 443, 552
DpnII	GATC	4 cut(s)	5, 377, 441, 550
EaeI	YGGCCR	1 cut(s)	366
EagI	CGGCCG	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	500
EclXI	CGGCCG	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	623
Eco47I	GGWCC	3 cut(s)	345, 456, 510
Eco52I	CGGCCG	1 cut(s)	366
Eco57I	CTGAAG	3 cut(s)	22, 232, 494
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	623
ErhI	CCWWGG	1 cut(s)	623
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	1 cut(s)	79
FaiI	YATR	2 cut(s)	77, 468
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 34, 109, 546, 578
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 34, 109, 546, 578
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 34, 109, 546, 578
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	4 cut(s)	60, 309, 323, 368
HapII	CCGG	2 cut(s)	162, 409
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	4 cut(s)	238, 399, 499, 520
HindII	GTYRAC	4 cut(s)	238, 399, 499, 520
HindIII	AAGCTT	1 cut(s)	536
HpaII	CCGG	2 cut(s)	162, 409
HphI	GGTGA	2 cut(s)	43, 442
Hpy166II	GTNNAC	4 cut(s)	238, 399, 499, 520
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	3 cut(s)	328, 375, 439
Hpy8I	GTNNAC	4 cut(s)	238, 399, 499, 520
Hpy99I	CGWCG	2 cut(s)	59, 508
HpyAV	CCTTC	5 cut(s)	313, 325, 421, 469, 520
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	2 cut(s)	180, 234
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 21, 24, 30, 33, 39
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	2 cut(s)	180, 234
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	4 cut(s)	5, 377, 441, 550
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	6 cut(s)	8, 11, 20, 95, 532, 589
MaeII	ACGT	2 cut(s)	180, 234
MalI	GATC	4 cut(s)	7, 379, 443, 552
MboI	GATC	4 cut(s)	5, 377, 441, 550
MboII	GAAGA	4 cut(s)	40, 64, 328, 598
MflI	RGATCY	2 cut(s)	5, 441
MluCI	AATT	1 cut(s)	595
MluI	ACGCGT	1 cut(s)	501
MseI	TTAA	2 cut(s)	194, 534
MspA1I	CMGCKG	2 cut(s)	12, 108
MspI	CCGG	2 cut(s)	162, 409
MspR9I	CCNGG	2 cut(s)	305, 410
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	6 cut(s)	18, 21, 24, 30, 33, 39
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	4 cut(s)	5, 377, 441, 550
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	3 cut(s)	7, 346, 511
PciSI	GCTCTTC	1 cut(s)	77
PkrI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 35, 110, 547, 579
PshAI	GACNNNNGTC	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	7, 346, 511
PspPI	GGNCC	5 cut(s)	307, 322, 345, 456, 510
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	2 cut(s)	5, 441
PvuII	CAGCTG	1 cut(s)	108
RsaI	GTAC	2 cut(s)	122, 291
RsaNI	GTAC	2 cut(s)	121, 290
SalI	GTCGAC	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	194, 534
SatI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 34, 109, 546, 578
Sau3AI	GATC	4 cut(s)	5, 377, 441, 550
Sau96I	GGNCC	5 cut(s)	307, 322, 345, 456, 510
ScaI	AGTACT	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	305, 410
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	3 cut(s)	345, 456, 510
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	595
SsiI	CCGC	4 cut(s)	12, 15, 18, 485
StyD4I	CCNGG	2 cut(s)	303, 408
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	2 cut(s)	183, 237
TaqI	TCGA	1 cut(s)	398
TasI	AATT	1 cut(s)	595
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	3 cut(s)	15, 18, 21
Tru1I	TTAA	2 cut(s)	194, 534
Tru9I	TTAA	2 cut(s)	194, 534
TscAI	CASTG	2 cut(s)	35, 70
TseI	GCWGC	6 cut(s)	21, 24, 33, 108, 545, 577
TspDTI	ATGAA	2 cut(s)	64, 598
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	35, 70
VpaK11BI	GGWCC	3 cut(s)	345, 456, 510
XagI	CCTNNNNNAGG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	398
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.