Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Reverse (-)

32053412 .. 32054053

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG291400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGGATCCAGCGGCGGCGGCTGCTGCCAGTGCTGCTTCAGCTTCATCTTCACCGTCGGCCTCACCGCGCTCTTCATGTGGCTCAGCCTACGCACCTCCAAACCCAGCTGCTCCATCCAGTACTTTTACCTCCCTGCCCTCAACAAAACCCTAAACGACACTGGAAACAAAACCCTCTACGTTTCCCTCTGGTTAAAAAACGGCAACAAGGACAAGGGCATTTACTACGATAACGTCAACCTCACCTTCAGCCTCCCCAACACCCCCAACACCAGCAAGCAAGTAGTAGGAAACGCAAACGTAACCAAGTTCTACCAGGGCCACAAGAAGAAGGCCCTCAAGCAGGTGGACTTGGGGTCCGATAAGCTCAACTGGACGGCGGTTAATGGATCGGTTTATCCCAACGGGTCGACTTATTTCCGGGTGGATTTGGAGACGAGGGTGAGGTTCAAGATCATATTTTGGAGGACCAAGAGGCATAGGTTGAAGGTTGGGGCGGATGTGGAGGTCAATGCTTCGGGGACCAAAGTCAACAAGAAGGATGTTAAGCTTTCTGCTGCAGATCATCAGCTTGCTTCTTATTCTGGGCAGCTCTGGGTTTTGCTCAATTTCTTGGTCTTCATTTTGCTCAATCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

213

Amino Acids

23.96

Weight (kDa)

9.77

Isoelectric Point (pI)

17.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	410
AccII	CGCG	1 cut(s)	68
AciI	CCGC	6 cut(s)	12, 15, 18, 66, 380, 497
AclWI	GGATC	2 cut(s)	13, 397
AcuI	CTGAAG	2 cut(s)	22, 232
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	451, 487
AhdI	GACNNNNNGTC	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	6 cut(s)	42, 108, 367, 550, 571, 592
AluI	AGCT	6 cut(s)	42, 108, 367, 550, 571, 592
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	2 cut(s)	13, 397
AoxI	GGCC	3 cut(s)	58, 319, 333
ApeKI	GCWGC	6 cut(s)	21, 24, 33, 108, 557, 589
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	5 cut(s)	319, 334, 357, 468, 522
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	4 cut(s)	43, 55, 235, 454
AvaII	GGWCC	3 cut(s)	357, 468, 522
BamHI	GGATCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	610
BbvI	GCAGC	6 cut(s)	8, 11, 20, 95, 544, 601
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	2 cut(s)	217, 393
BciT130I	CCWGG	1 cut(s)	317
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	558
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 34, 109, 558, 590
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 35, 110, 559, 591
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	317, 422
Bme18I	GGWCC	3 cut(s)	357, 468, 522
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmgT120I	GGNCC	5 cut(s)	319, 334, 357, 468, 522
BmiI	GGNNCC	3 cut(s)	7, 358, 523
BmrFI	CCNGG	2 cut(s)	317, 422
BoxI	GACNNNNGTC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	610
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	316, 635
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	4 cut(s)	28, 118, 166, 377
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	316, 635
BseGI	GGATG	3 cut(s)	114, 505, 547
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	4 cut(s)	28, 118, 166, 377
BseXI	GCAGC	6 cut(s)	8, 11, 20, 95, 544, 601
BseYI	CCCAGC	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	3 cut(s)	60, 321, 335
BsiSI	CCGG	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	428
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	3 cut(s)	60, 321, 335
Bsp143I	GATC	4 cut(s)	5, 389, 453, 562
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	6 cut(s)	12, 15, 18, 66, 380, 497
BspANI	GGCC	3 cut(s)	60, 321, 335
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	7, 358, 523
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	2 cut(s)	13, 397
BspQI	GCTCTTC	1 cut(s)	77
BsrI	ACTGG	4 cut(s)	28, 118, 166, 377
BssECI	CCNNGG	2 cut(s)	316, 635
BssMI	GATC	4 cut(s)	5, 389, 453, 562
BssT1I	CCWWGG	1 cut(s)	635
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	278, 573
BstDEI	CTNAG	1 cut(s)	83
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	3 cut(s)	114, 505, 547
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	4 cut(s)	8, 392, 456, 565
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	4 cut(s)	5, 389, 453, 562
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 21, 24, 30, 33, 39
BstNI	CCWGG	1 cut(s)	317
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	315, 420
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	6 cut(s)	8, 11, 20, 95, 544, 601
BstV2I	GAAGAC	1 cut(s)	610
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	3 cut(s)	60, 321, 335
BtsCI	GGATG	3 cut(s)	114, 505, 547
BtsIMutI	CAGTG	2 cut(s)	35, 159
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	278, 573
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	5 cut(s)	319, 334, 357, 468, 522
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	4 cut(s)	7, 391, 455, 564
DpnII	GATC	4 cut(s)	5, 389, 453, 562
DriI	GACNNNNNGTC	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	635
Eco47I	GGWCC	3 cut(s)	357, 468, 522
Eco57I	CTGAAG	2 cut(s)	22, 232
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	635
ErhI	CCWWGG	1 cut(s)	635
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 458, 480
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 34, 109, 558, 590
FokI	GGATG	3 cut(s)	101, 512, 554
Fsp4HI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 34, 109, 558, 590
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 34, 109, 558, 590
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	60, 321, 335
HapII	CCGG	1 cut(s)	421
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	3 cut(s)	238, 411, 532
HindII	GTYRAC	3 cut(s)	238, 411, 532
HindIII	AAGCTT	1 cut(s)	548
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	4 cut(s)	43, 55, 235, 454
Hpy166II	GTNNAC	4 cut(s)	238, 349, 411, 532
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	1 cut(s)	451
Hpy8I	GTNNAC	4 cut(s)	238, 349, 411, 532
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	256, 325, 481, 532
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	3 cut(s)	180, 234, 300
HpyCH4V	TGCA	1 cut(s)	560
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 21, 24, 30, 33, 39
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	3 cut(s)	180, 234, 300
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	4 cut(s)	5, 389, 453, 562
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	6 cut(s)	8, 11, 20, 95, 544, 601
MaeII	ACGT	3 cut(s)	180, 234, 300
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	4 cut(s)	7, 391, 455, 564
MboI	GATC	4 cut(s)	5, 389, 453, 562
MboII	GAAGA	4 cut(s)	40, 64, 340, 610
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	1 cut(s)	607
MseI	TTAA	3 cut(s)	194, 384, 546
MspA1I	CMGCKG	2 cut(s)	12, 108
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	2 cut(s)	317, 422
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	6 cut(s)	18, 21, 24, 30, 33, 39
NciI	CCSGG	1 cut(s)	422
NdeII	GATC	4 cut(s)	5, 389, 453, 562
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	3 cut(s)	7, 358, 523
PaqCI	CACCTGC	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	77
PkrI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 35, 110, 559, 591
PshAI	GACNNNNGTC	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	3 cut(s)	7, 358, 523
PspPI	GGNCC	5 cut(s)	319, 334, 357, 468, 522
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	5
PvuII	CAGCTG	1 cut(s)	108
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SalI	GTCGAC	1 cut(s)	409
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	194, 384, 546
SatI	GCNGC	9 cut(s)	13, 16, 19, 22, 25, 34, 109, 558, 590
Sau3AI	GATC	4 cut(s)	5, 389, 453, 562
Sau96I	GGNCC	5 cut(s)	319, 334, 357, 468, 522
ScaI	AGTACT	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	317, 422
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	3 cut(s)	357, 468, 522
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	607
SsiI	CCGC	6 cut(s)	12, 15, 18, 66, 380, 497
StyD4I	CCNGG	2 cut(s)	315, 420
StyI	CCWWGG	1 cut(s)	635
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	3 cut(s)	183, 237, 303
TaqI	TCGA	1 cut(s)	410
TasI	AATT	1 cut(s)	607
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	3 cut(s)	15, 18, 21
Tru1I	TTAA	3 cut(s)	194, 384, 546
Tru9I	TTAA	3 cut(s)	194, 384, 546
TscAI	CASTG	2 cut(s)	35, 166
TseI	GCWGC	6 cut(s)	21, 24, 33, 108, 557, 589
TspDTI	ATGAA	3 cut(s)	34, 64, 610
TspRI	CASTG	2 cut(s)	35, 166
VpaK11BI	GGWCC	3 cut(s)	357, 468, 522
XagI	CCTNNNNNAGG	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.