Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Forward (+)

29018897 .. 29019541

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1211000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGGATCCATCACCCGGGTGCTGCAGGCGCTGCTTCAGCATCATATTCACCCTCGGCCTCACAGCCCTCTCCATGTGGCTGAGCCTCCGCACCTCCAACCCCAAGTGCACCATCCACTCATTTTACCTTCCTGCCCTCAACCGGACCCTAAACGACACCAAAAACACGACCCTCTTCGTCGCCCTCCGGCTCAAAAACACCAACAGTGAAAAGGGAGTTTACTATGATGCCGTCAACCTCACCTTCCGGCTGCTGCCCAATGCCACCAGCATGCCCGTAGCAACTTCTGCTGTGCCCCGGTTCTACCAGGGCCACAAGAAGACGGCCACCAAGATCTTGGTCGTGGGCCCCCAAGAGTGGCTCAACTGGACGGCAGTGTTCAGTGGGGTCCACCCCAATGGGAGTGTGAATTTCAGGGTGGATTTGGCCACTGCTGTGAGGTTCAAGATCATGTTTTGGAAGACCAAGAGGCACAGGCTGAATGTTGGTGCTGACGTGCTGGTCAATGACTCCGGCGGGAAAGTCAACGAGAAGGATATCAAACTCTCTGCTGCACCAGATCATCACCTGATTGGTTTCTTTTCTGGGCAGGTGGGGGTTTTGTCCAATTTCTTGGTTTTGATTTTGCTCAATTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

215

Amino Acids

23.79

Weight (kDa)

9.98

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	583
AasI	GACNNNNNNGTC	1 cut(s)	503
Acc36I	ACCTGC	1 cut(s)	583
AciI	CCGC	3 cut(s)	5, 91, 519
AclWI	GGATC	2 cut(s)	2, 15
AcoI	YGGCCR	2 cut(s)	327, 429
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	22
AfiI	CCNNNNNNNGG	3 cut(s)	17, 144, 360
AgsI	TTSAA	1 cut(s)	448
AjiI	CACGTC	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	309
AleI	CACNNNNGTG	2 cut(s)	19, 437
Alw21I	GWGCWC	1 cut(s)	113
Alw44I	GTGCAC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	2, 15
AlwNI	CAGNNNCTG	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	5 cut(s)	58, 313, 327, 349, 429
ApaI	GGGCCC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	109
ApeKI	GCWGC	5 cut(s)	24, 33, 253, 256, 554
ApoI	RAATTY	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	5 cut(s)	147, 313, 349, 350, 391
AsuC2I	CCSGG	3 cut(s)	18, 19, 301
AsuHPI	GGTGA	4 cut(s)	6, 43, 235, 560
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	147, 391
BaeGI	GKGCMC	3 cut(s)	113, 300, 353
BalI	TGGCCA	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	353
BbsI	GAAGAC	2 cut(s)	329, 470
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	5 cut(s)	11, 20, 240, 243, 541
BccI	CCATC	2 cut(s)	19, 122
BceAI	ACGGC	3 cut(s)	218, 342, 390
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	3 cut(s)	18, 19, 301
BfmI	CTRYAG	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	583
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	5 cut(s)	25, 34, 254, 257, 555
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	5 cut(s)	26, 35, 255, 258, 556
Bme1390I	CCNGG	4 cut(s)	18, 19, 301, 311
Bme18I	GGWCC	2 cut(s)	147, 391
BmeT110I	CYCGRG	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	5 cut(s)	147, 313, 349, 350, 391
BmiI	GGNNCC	5 cut(s)	9, 149, 351, 352, 392
BmrFI	CCNGG	4 cut(s)	18, 19, 301, 311
BmsI	GCATC	2 cut(s)	51, 220
BpiI	GAAGAC	2 cut(s)	329, 470
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuMI	CCSGG	3 cut(s)	18, 19, 301
BsaJI	CCNNGG	4 cut(s)	17, 55, 299, 310
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 144, 360
Bse1I	ACTGG	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	4 cut(s)	17, 55, 299, 310
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	17, 144, 360
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	374
BseSI	GKGCMC	3 cut(s)	113, 300, 353
BseXI	GCAGC	5 cut(s)	11, 20, 240, 243, 541
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	5 cut(s)	60, 315, 329, 351, 431
BsiHKAI	GWGCWC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	6 cut(s)	18, 145, 190, 250, 301, 516
BslI	CCNNNNNNNGG	3 cut(s)	17, 144, 360
BsnI	GGCC	5 cut(s)	60, 315, 329, 351, 431
BsoBI	CYCGRG	1 cut(s)	17
Bsp120I	GGGCCC	1 cut(s)	349
Bsp1286I	GDGCHC	3 cut(s)	113, 300, 353
Bsp143I	GATC	4 cut(s)	7, 336, 450, 562
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	3 cut(s)	5, 91, 519
BspANI	GGCC	5 cut(s)	60, 315, 329, 351, 431
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	5 cut(s)	9, 149, 351, 352, 392
BspMAI	CTGCAG	1 cut(s)	29
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	2 cut(s)	2, 15
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	4 cut(s)	17, 55, 299, 310
BssMI	GATC	4 cut(s)	7, 336, 450, 562
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	182
BstAPI	GCANNNNNTGC	2 cut(s)	33, 290
BstC8I	GCNNGC	2 cut(s)	29, 275
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	4 cut(s)	10, 339, 453, 565
BstMBI	GATC	4 cut(s)	7, 336, 450, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 33, 39, 290
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	4 cut(s)	16, 17, 299, 309
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	3 cut(s)	113, 300, 353
BstV1I	GCAGC	5 cut(s)	11, 20, 240, 243, 541
BstV2I	GAAGAC	2 cut(s)	329, 470
BstX2I	RGATCY	2 cut(s)	7, 336
BstXI	CCANNNNNNTGG	3 cut(s)	340, 401, 616
BstYI	RGATCY	2 cut(s)	7, 336
BsuRI	GGCC	5 cut(s)	60, 315, 329, 351, 431
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	2 cut(s)	384, 432
BtsIMutI	CAGTG	4 cut(s)	214, 384, 391, 432
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	2 cut(s)	29, 275
CaiI	CAGNNNCTG	1 cut(s)	33
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	5 cut(s)	147, 313, 349, 350, 391
Cfr9I	CCCGGG	1 cut(s)	17
CviAII	CATG	3 cut(s)	76, 274, 454
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	4 cut(s)	9, 338, 452, 564
DpnII	GATC	4 cut(s)	7, 336, 450, 562
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
EaeI	YGGCCR	2 cut(s)	327, 429
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	2 cut(s)	147, 391
Eco57I	CTGAAG	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	309
EcoRV	GATATC	1 cut(s)	541
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	3 cut(s)	79, 277, 457
FaiI	YATR	5 cut(s)	47, 77, 228, 275, 455
FatI	CATG	3 cut(s)	75, 273, 453
FauI	CCCGC	1 cut(s)	512
Fnu4HI	GCNGC	5 cut(s)	25, 34, 254, 257, 555
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	5 cut(s)	25, 34, 254, 257, 555
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	5 cut(s)	25, 34, 254, 257, 555
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	5 cut(s)	60, 315, 329, 351, 431
HapII	CCGG	6 cut(s)	18, 145, 190, 250, 301, 516
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	79, 277, 457
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	2 cut(s)	238, 529
HindII	GTYRAC	2 cut(s)	238, 529
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	6 cut(s)	18, 145, 190, 250, 301, 516
HphI	GGTGA	4 cut(s)	6, 43, 235, 560
Hpy166II	GTNNAC	5 cut(s)	111, 223, 238, 394, 529
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	5 cut(s)	111, 223, 238, 394, 529
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	140, 256, 529
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	3 cut(s)	27, 111, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 33, 39, 290
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	3 cut(s)	79, 277, 457
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	7, 336, 450, 562
Lsp1109I	GCAGC	5 cut(s)	11, 20, 240, 243, 541
LweI	GCATC	2 cut(s)	51, 220
MaeII	ACGT	1 cut(s)	498
MalI	GATC	4 cut(s)	9, 338, 452, 564
MboI	GATC	4 cut(s)	7, 336, 450, 562
MboII	GAAGA	3 cut(s)	169, 334, 475
MflI	RGATCY	2 cut(s)	7, 336
MhlI	GDGCHC	3 cut(s)	113, 300, 353
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	3 cut(s)	412, 610, 634
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	431
MslI	CAYNNNNRTG	4 cut(s)	19, 272, 399, 437
Msp20I	TGGCCA	1 cut(s)	431
MspI	CCGG	6 cut(s)	18, 145, 190, 250, 301, 516
MspR9I	CCNGG	4 cut(s)	18, 19, 301, 311
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	4 cut(s)	30, 33, 39, 290
NciI	CCSGG	3 cut(s)	18, 19, 301
NdeII	GATC	4 cut(s)	7, 336, 450, 562
NlaIII	CATG	3 cut(s)	79, 277, 457
NlaIV	GGNNCC	5 cut(s)	9, 149, 351, 352, 392
NmeAIII	GCCGAG	1 cut(s)	36
NspI	RCATGY	1 cut(s)	277
OliI	CACNNNNGTG	2 cut(s)	19, 437
PaeI	GCATGC	1 cut(s)	277
PaqCI	CACCTGC	1 cut(s)	583
PkrI	GCNGC	5 cut(s)	26, 35, 255, 258, 556
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	5 cut(s)	9, 149, 351, 352, 392
PspOMI	GGGCCC	1 cut(s)	349
PspPI	GGNCC	5 cut(s)	147, 313, 349, 350, 391
PstI	CTGCAG	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	33
PsuI	RGATCY	2 cut(s)	7, 336
RseI	CAYNNNNRTG	4 cut(s)	19, 272, 399, 437
SatI	GCNGC	5 cut(s)	25, 34, 254, 257, 555
Sau3AI	GATC	4 cut(s)	7, 336, 450, 562
Sau96I	GGNCC	5 cut(s)	147, 313, 349, 350, 391
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	4 cut(s)	18, 19, 301, 311
SduI	GDGCHC	3 cut(s)	113, 300, 353
SetI	ASST	8 cut(s)	98, 132, 243, 248, 446, 501, 573, 597
SfaNI	GCATC	2 cut(s)	51, 220
SfcI	CTRYAG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	147, 391
SmaI	CCCGGG	1 cut(s)	19
SmiMI	CAYNNNNRTG	4 cut(s)	19, 272, 399, 437
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	3 cut(s)	412, 610, 634
SsiI	CCGC	3 cut(s)	5, 91, 519
StyD4I	CCNGG	4 cut(s)	16, 17, 299, 309
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	1 cut(s)	501
TasI	AATT	3 cut(s)	412, 610, 634
TscAI	CASTG	4 cut(s)	214, 384, 391, 439
TseI	GCWGC	5 cut(s)	24, 33, 253, 256, 554
TspMI	CCCGGG	1 cut(s)	17
TspRI	CASTG	4 cut(s)	214, 384, 391, 439
VneI	GTGCAC	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	147, 391
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmaI	CCCGGG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.