Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Forward (+)

32994805 .. 32995446

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1225800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCGGATCAATCAGGCGGGTGCTGCAGGTGCTGCTTCAGCTTCATATTCACCCTCGGCCTCACAGCCCTCTTCGTGTGGCTGAGCCTGCGCACCTCCAACCCCAAGTGCACAATCCGCTCGTTTTACCTTCCTGCCCTCAACCGGACCCTAAACGACACCAAAAACACCACCGTCTTCGTCACCCTCAGGCTCGGAAACACCAACAAGGACAAGGGCGTTTACTACGACGCCGTCAACCTCACCTTCCGGCTGCAGCCCAACGCCACCGGCATACCGGTGGCAACTTATGCGGTGCCCCGGTTCTACCAGGGGCACAAGAAGACGGCCACAAAGAAAGTGGTCGTGGGGCCCCAAGGACTCAACTGGACGGCGGTGTCCAGTGGGGTCTACCCCAATGGGAGTGCGATTTTTAGGGTGGATTTGGCCACTGCTGTGAGGTTCAAGATCATGTTTTGGAGGACCAAGAGGCATAAGCTGAATGTTGGGGCTGATGTGCTGGTCAATGACTCTGGTGGAAAAGTCAACAGGAAGGATATCAAGCTCTCTGCTGCACCAGATCATCACCTGATTGGATTCTTTTCTGGACAGGTGGGGGTTTTGTCCAATTTCTTGGTTTTGATTTTCCTTATTTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

214

Amino Acids

23.59

Weight (kDa)

10.11

Isoelectric Point (pI)

27.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	18
AasI	GACNNNNNNGTC	1 cut(s)	376
Acc16I	TGCGCA	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	4 cut(s)	18, 118, 293, 374
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	2 cut(s)	327, 426
AcuI	CTGAAG	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgeI	ACCGGT	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	309
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	3 cut(s)	42, 478, 544
AluI	AGCT	3 cut(s)	42, 478, 544
Alw21I	GWGCWC	1 cut(s)	113
Alw44I	GTGCAC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	15
AlwNI	CAGNNNCTG	1 cut(s)	33
AoxI	GGCC	4 cut(s)	58, 327, 350, 426
ApaI	GGGCCC	1 cut(s)	354
ApaLI	GTGCAC	1 cut(s)	109
ApeKI	GCWGC	5 cut(s)	24, 33, 253, 256, 551
AsiGI	ACCGGT	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	4 cut(s)	147, 350, 351, 462
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	4 cut(s)	43, 175, 235, 557
AvaII	GGWCC	2 cut(s)	147, 462
AxyI	CCTNAGG	1 cut(s)	188
BaeGI	GKGCMC	4 cut(s)	113, 300, 318, 354
BalI	TGGCCA	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	2 cut(s)	169, 329
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	5 cut(s)	11, 20, 240, 268, 538
BceAI	ACGGC	3 cut(s)	218, 342, 387
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	301
BfmI	CTRYAG	2 cut(s)	25, 254
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	5 cut(s)	25, 34, 254, 257, 552
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	5 cut(s)	26, 35, 255, 258, 553
Bme1390I	CCNGG	2 cut(s)	301, 311
Bme18I	GGWCC	2 cut(s)	147, 462
BmgT120I	GGNCC	4 cut(s)	147, 350, 351, 462
BmiI	GGNNCC	5 cut(s)	149, 297, 351, 352, 353
BmrFI	CCNGG	2 cut(s)	301, 311
BpiI	GAAGAC	2 cut(s)	169, 329
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	4 cut(s)	55, 299, 310, 355
BsaWI	WCCGGW	2 cut(s)	144, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	2 cut(s)	269, 277
Bse1I	ACTGG	2 cut(s)	371, 381
Bse21I	CCTNAGG	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	4 cut(s)	55, 299, 310, 355
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	74, 202
BseNI	ACTGG	2 cut(s)	371, 381
BseSI	GKGCMC	4 cut(s)	113, 300, 318, 354
BseXI	GCAGC	5 cut(s)	11, 20, 240, 268, 538
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	4 cut(s)	60, 329, 352, 428
BshNI	GGYRCC	1 cut(s)	295
BshTI	ACCGGT	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	6 cut(s)	5, 145, 250, 270, 278, 301
BslI	CCNNNNNNNGG	1 cut(s)	144
BsnI	GGCC	4 cut(s)	60, 329, 352, 428
Bsp120I	GGGCCC	1 cut(s)	350
Bsp1286I	GDGCHC	4 cut(s)	113, 300, 318, 354
Bsp143I	GATC	3 cut(s)	7, 447, 559
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	4 cut(s)	18, 118, 293, 374
BspANI	GGCC	4 cut(s)	60, 329, 352, 428
BspCNI	CTCAG	2 cut(s)	75, 201
BspLI	GGNNCC	5 cut(s)	149, 297, 351, 352, 353
BspMAI	CTGCAG	2 cut(s)	29, 258
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	120
BsrFI	RCCGGY	2 cut(s)	269, 277
BsrI	ACTGG	2 cut(s)	371, 381
BssAI	RCCGGY	2 cut(s)	269, 277
BssECI	CCNNGG	4 cut(s)	55, 299, 310, 355
BssMI	GATC	3 cut(s)	7, 447, 559
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	2 cut(s)	33, 290
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	83, 188
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	10, 450, 562
BstMBI	GATC	3 cut(s)	7, 447, 559
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 30, 33, 39, 88, 117, 290
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	299, 309
BstSFI	CTRYAG	2 cut(s)	25, 254
BstSLI	GKGCMC	4 cut(s)	113, 300, 318, 354
BstV1I	GCAGC	5 cut(s)	11, 20, 240, 268, 538
BstV2I	GAAGAC	2 cut(s)	169, 329
BstXI	CCANNNNNNTGG	1 cut(s)	613
Bsu36I	CCTNAGG	1 cut(s)	188
BsuRI	GGCC	4 cut(s)	60, 329, 352, 428
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	388, 429
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	33
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	2 cut(s)	269, 277
Cfr13I	GGNCC	4 cut(s)	147, 350, 351, 462
CseI	GACGC	1 cut(s)	239
CspAI	ACCGGT	1 cut(s)	277
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	1 cut(s)	451
DdeI	CTNAG	2 cut(s)	83, 188
DpnI	GATC	3 cut(s)	9, 449, 561
DpnII	GATC	3 cut(s)	7, 447, 559
DrdI	GACNNNNNNGTC	1 cut(s)	376
DseDI	GACNNNNNNGTC	1 cut(s)	376
EaeI	YGGCCR	2 cut(s)	327, 426
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	2 cut(s)	147, 462
Eco57I	CTGAAG	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	2 cut(s)	350, 351
EcoRII	CCWGG	1 cut(s)	309
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	1 cut(s)	454
FaiI	YATR	5 cut(s)	47, 275, 291, 452, 474
FatI	CATG	1 cut(s)	450
FauI	CCCGC	1 cut(s)	11
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	25, 34, 254, 257, 552
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	5 cut(s)	25, 34, 254, 257, 552
FspI	TGCGCA	1 cut(s)	92
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	5 cut(s)	25, 34, 254, 257, 552
HaeIII	GGCC	4 cut(s)	60, 329, 352, 428
HapII	CCGG	6 cut(s)	5, 145, 250, 270, 278, 301
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	454
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	2 cut(s)	238, 526
HindII	GTYRAC	2 cut(s)	238, 526
HinfI	GANTC	3 cut(s)	360, 509, 576
HpaII	CCGG	6 cut(s)	5, 145, 250, 270, 278, 301
HphI	GGTGA	4 cut(s)	43, 175, 235, 557
Hpy166II	GTNNAC	5 cut(s)	111, 223, 238, 391, 526
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	445, 585
Hpy8I	GTNNAC	5 cut(s)	111, 223, 238, 391, 526
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	140, 256, 526
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	27, 111, 256, 554
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 30, 33, 39, 88, 117, 290
HpyF3I	CTNAG	2 cut(s)	83, 188
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	454
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	7, 447, 559
Lsp1109I	GCAGC	5 cut(s)	11, 20, 240, 268, 538
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	9, 449, 561
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	3 cut(s)	7, 447, 559
MboII	GAAGA	3 cut(s)	64, 169, 334
MhlI	GDGCHC	4 cut(s)	113, 300, 318, 354
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	1 cut(s)	607
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	2 cut(s)	354, 503
MmeI	TCCRAC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	428
MslI	CAYNNNNRTG	2 cut(s)	278, 434
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	6 cut(s)	5, 145, 250, 270, 278, 301
MspR9I	CCNGG	2 cut(s)	301, 311
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	7 cut(s)	24, 30, 33, 39, 88, 117, 290
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	3 cut(s)	7, 447, 559
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	5 cut(s)	149, 297, 351, 352, 353
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	181
NsbI	TGCGCA	1 cut(s)	92
OliI	CACNNNNGTG	1 cut(s)	434
PaqCI	CACCTGC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	576
PflFI	GACNNNGTC	1 cut(s)	233
PinAI	ACCGGT	1 cut(s)	277
PkrI	GCNGC	5 cut(s)	26, 35, 255, 258, 553
PleI	GAGTC	2 cut(s)	354, 503
PpsI	GAGTC	2 cut(s)	354, 503
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	5 cut(s)	149, 297, 351, 352, 353
PspOMI	GGGCCC	1 cut(s)	350
PspPI	GGNCC	4 cut(s)	147, 350, 351, 462
PstI	CTGCAG	2 cut(s)	29, 258
PstNI	CAGNNNCTG	1 cut(s)	33
PsyI	GACNNNGTC	1 cut(s)	233
RseI	CAYNNNNRTG	2 cut(s)	278, 434
SatI	GCNGC	5 cut(s)	25, 34, 254, 257, 552
Sau3AI	GATC	3 cut(s)	7, 447, 559
Sau96I	GGNCC	4 cut(s)	147, 350, 351, 462
SchI	GAGTC	2 cut(s)	354, 503
ScrFI	CCNGG	2 cut(s)	301, 311
SduI	GDGCHC	4 cut(s)	113, 300, 318, 354
SfcI	CTRYAG	2 cut(s)	25, 254
SinI	GGWCC	2 cut(s)	147, 462
SmiMI	CAYNNNNRTG	2 cut(s)	278, 434
Sse9I	AATT	1 cut(s)	607
SsiI	CCGC	4 cut(s)	18, 118, 293, 374
StyD4I	CCNGG	2 cut(s)	299, 309
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	175
TasI	AATT	1 cut(s)	607
TfiI	GAWTC	1 cut(s)	576
TscAI	CASTG	2 cut(s)	388, 436
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	5 cut(s)	24, 33, 253, 256, 551
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	388, 436
Tth111I	GACNNNGTC	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	147, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.