Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010039

Physical Location & Seq

Genomic Coordinates Forward (+)

29004862 .. 29005506

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1210900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGGATCCATCAGGCGGGTTCTGCGGCTGCTGCTTCAGCTTCATATTCACCCTCGGCCTCACAGCCCTCTCCATGTGGCTGAGCCTGCGCACCTCCAACCCCAAGTGCACCATCCACTCATTTTACCTTCCTGCCCTCAATCGGACACTAAACGACACCAAAAACACCACCCTCTTCGTCGCTCTCCGGCTCAAAAACACCAACAGTGACAAGGGAGTTTACTATGACGCCGTCAACCTCACCTTCCGGCTGCTGCCCAATGCCACCAGCATGCCCGTAGCAACTTCTGCTGTGCCCCGGTTCTACCAGGGCCGCAAGAAGACGGCCACCAAGAAGGTGATCGTGGGCCCCCAAGAGGGGCTCAACTGGACGGCGGTGTCCAGTGGGGTCCATCCCAATGGGAGTGTGAGTTTCAGGGTGGATTTGGCCACTGCTGTGAGGTTCAAGATCATATTTTGGAAGACCAAGAGGCACAGGCTGAATGTTGGGGCTGACGTGCTGGTCAATGACTCCGGTGCGAAAGTCAGCGAGAAGGATATCAAGCTCTCTGCTGCACCAGACCATCACCTGATTGGTTTCTTTTCTGGGCAGGTGGGGGTTTTGTCCAATTTCCTGGTTTTGATTTTGCTCAAATTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033554 GO:0034050 GO:0042742 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

215

Amino Acids

23.46

Weight (kDa)

9.98

Isoelectric Point (pI)

22.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20590 AT3G20600 AT3G20610
fragaria_vesca	FvH4_3g21890
malus_domestica	MD03G1210900.v1.1 MD03G1211000.v1.1 MD03G1211100.v1.1 MD11G1225800.v1.1
prunus_persica	Prupe.4G204400_v2.0.a1 Prupe.6G166500_v2.0.a1
pyrus_communis	pycom03g15950 pycom03g16000
rosa_chinensis	RchiOBHm_Chr5g0037701
rosa_laevigata	RLG00000033802
rosa_multiflora	Rmu_sc0006558.1_g000024
rosa_roxburghii	Rroxscaffold_1G00043240
rosa_samantha	Rh5AG255900 Rh5BG258000 Rh5CG291400 Rh5DG267500
rosa_wichuraiana	Rw5G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	583
AasI	GACNNNNNNGTC	2 cut(s)	379, 503
Acc16I	TGCGCA	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	583
AciI	CCGC	5 cut(s)	5, 18, 27, 316, 377
AclWI	GGATC	2 cut(s)	2, 15
AcoI	YGGCCR	2 cut(s)	327, 429
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	5 cut(s)	17, 144, 358, 359, 360
AgsI	TTSAA	1 cut(s)	448
AjiI	CACGTC	1 cut(s)	499
AjnI	CCWGG	2 cut(s)	309, 615
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	2 cut(s)	42, 547
AluI	AGCT	2 cut(s)	42, 547
Alw21I	GWGCWC	1 cut(s)	113
Alw44I	GTGCAC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	2, 15
AoxI	GGCC	5 cut(s)	58, 313, 327, 349, 429
ApaI	GGGCCC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	109
ApeKI	GCWGC	5 cut(s)	30, 33, 253, 256, 554
ApoI	RAATTY	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	4 cut(s)	313, 349, 350, 391
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	4 cut(s)	43, 235, 352, 560
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	3 cut(s)	113, 300, 353
BalI	TGGCCA	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	7
BanII	GRGCYC	2 cut(s)	353, 366
BbsI	GAAGAC	2 cut(s)	329, 470
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	5 cut(s)	17, 20, 240, 243, 541
BccI	CCATC	4 cut(s)	19, 122, 402, 573
BceAI	ACGGC	3 cut(s)	218, 342, 390
BciT130I	CCWGG	2 cut(s)	311, 617
BcnI	CCSGG	1 cut(s)	301
BfuAI	ACCTGC	1 cut(s)	583
BisI	GCNGC	7 cut(s)	28, 31, 34, 254, 257, 316, 555
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	7 cut(s)	29, 32, 35, 255, 258, 317, 556
Bme1390I	CCNGG	3 cut(s)	301, 311, 617
Bme18I	GGWCC	1 cut(s)	391
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	4 cut(s)	313, 349, 350, 391
BmiI	GGNNCC	4 cut(s)	9, 351, 352, 392
BmrFI	CCNGG	3 cut(s)	301, 311, 617
BpiI	GAAGAC	2 cut(s)	329, 470
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	55, 299, 310
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 144, 358, 359, 360
Bse1I	ACTGG	2 cut(s)	374, 384
BseBI	CCWGG	2 cut(s)	311, 617
BseDI	CCNNGG	3 cut(s)	55, 299, 310
BseGI	GGATG	2 cut(s)	114, 394
BseLI	CCNNNNNNNGG	5 cut(s)	17, 144, 358, 359, 360
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	2 cut(s)	374, 384
BseSI	GKGCMC	3 cut(s)	113, 300, 353
BseXI	GCAGC	5 cut(s)	17, 20, 240, 243, 541
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	5 cut(s)	60, 315, 329, 351, 431
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	4 cut(s)	190, 250, 301, 516
BslI	CCNNNNNNNGG	5 cut(s)	17, 144, 358, 359, 360
BsnI	GGCC	5 cut(s)	60, 315, 329, 351, 431
Bsp120I	GGGCCC	1 cut(s)	349
Bsp1286I	GDGCHC	4 cut(s)	113, 300, 353, 366
Bsp143I	GATC	3 cut(s)	7, 342, 450
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	5 cut(s)	5, 18, 27, 316, 377
BspANI	GGCC	5 cut(s)	60, 315, 329, 351, 431
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	4 cut(s)	9, 351, 352, 392
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	2 cut(s)	2, 15
BsrI	ACTGG	2 cut(s)	374, 384
BssECI	CCNNGG	3 cut(s)	55, 299, 310
BssMI	GATC	3 cut(s)	7, 342, 450
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	311, 617
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	89, 275
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	114, 394
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	10, 345, 453
BstMBI	GATC	3 cut(s)	7, 342, 450
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 88, 290
BstNI	CCWGG	2 cut(s)	311, 617
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	3 cut(s)	299, 309, 615
BstSLI	GKGCMC	3 cut(s)	113, 300, 353
BstV1I	GCAGC	5 cut(s)	17, 20, 240, 243, 541
BstV2I	GAAGAC	2 cut(s)	329, 470
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	2 cut(s)	401, 616
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	5 cut(s)	60, 315, 329, 351, 431
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	2 cut(s)	114, 394
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	214, 391, 432
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	2 cut(s)	89, 275
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	313, 349, 350, 391
CseI	GACGC	1 cut(s)	239
CviAII	CATG	2 cut(s)	76, 274
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	3 cut(s)	9, 344, 452
DpnII	GATC	3 cut(s)	7, 342, 450
DrdI	GACNNNNNNGTC	2 cut(s)	379, 503
DseDI	GACNNNNNNGTC	2 cut(s)	379, 503
EaeI	YGGCCR	2 cut(s)	327, 429
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	2 cut(s)	353, 366
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	309, 615
EcoRV	GATATC	1 cut(s)	541
EcoT38I	GRGCYC	2 cut(s)	353, 366
FaeI	CATG	2 cut(s)	79, 277
FaiI	YATR	5 cut(s)	47, 77, 228, 275, 455
FatI	CATG	2 cut(s)	75, 273
FauI	CCCGC	1 cut(s)	11
Fnu4HI	GCNGC	7 cut(s)	28, 31, 34, 254, 257, 316, 555
FokI	GGATG	2 cut(s)	101, 381
FriOI	GRGCYC	2 cut(s)	353, 366
Fsp4HI	GCNGC	7 cut(s)	28, 31, 34, 254, 257, 316, 555
FspI	TGCGCA	1 cut(s)	92
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	7 cut(s)	28, 31, 34, 254, 257, 316, 555
HaeIII	GGCC	5 cut(s)	60, 315, 329, 351, 431
HapII	CCGG	4 cut(s)	190, 250, 301, 516
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	79, 277
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	4 cut(s)	190, 250, 301, 516
HphI	GGTGA	4 cut(s)	43, 235, 352, 560
Hpy166II	GTNNAC	3 cut(s)	111, 223, 238
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	3 cut(s)	111, 223, 238
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	140, 256, 331, 529
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	2 cut(s)	111, 557
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 88, 290
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	79, 277
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	7, 342, 450
Lsp1109I	GCAGC	5 cut(s)	17, 20, 240, 243, 541
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	3 cut(s)	9, 344, 452
MboI	GATC	3 cut(s)	7, 342, 450
MboII	GAAGA	3 cut(s)	169, 334, 475
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	4 cut(s)	113, 300, 353, 366
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	2 cut(s)	610, 635
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	431
MslI	CAYNNNNRTG	3 cut(s)	272, 399, 437
Msp20I	TGGCCA	1 cut(s)	431
MspI	CCGG	4 cut(s)	190, 250, 301, 516
MspR9I	CCNGG	3 cut(s)	301, 311, 617
MvaI	CCWGG	2 cut(s)	311, 617
MwoI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 88, 290
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	3 cut(s)	7, 342, 450
NlaIII	CATG	2 cut(s)	79, 277
NlaIV	GGNNCC	4 cut(s)	9, 351, 352, 392
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	209
NsbI	TGCGCA	1 cut(s)	92
NspI	RCATGY	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	277
PaqCI	CACCTGC	1 cut(s)	583
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	7 cut(s)	29, 32, 35, 255, 258, 317, 556
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	309, 615
PspGI	CCWGG	2 cut(s)	309, 615
PspN4I	GGNNCC	4 cut(s)	9, 351, 352, 392
PspOMI	GGGCCC	1 cut(s)	349
PspPI	GGNCC	4 cut(s)	313, 349, 350, 391
PsuI	RGATCY	1 cut(s)	7
PsyI	GACNNNGTC	1 cut(s)	233
RseI	CAYNNNNRTG	3 cut(s)	272, 399, 437
SatI	GCNGC	7 cut(s)	28, 31, 34, 254, 257, 316, 555
Sau3AI	GATC	3 cut(s)	7, 342, 450
Sau96I	GGNCC	4 cut(s)	313, 349, 350, 391
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	301, 311, 617
SduI	GDGCHC	4 cut(s)	113, 300, 353, 366
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	3 cut(s)	272, 399, 437
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	2 cut(s)	610, 635
SsiI	CCGC	5 cut(s)	5, 18, 27, 316, 377
StyD4I	CCNGG	3 cut(s)	299, 309, 615
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	1 cut(s)	501
TasI	AATT	2 cut(s)	610, 635
TauI	GCSGC	2 cut(s)	30, 318
TscAI	CASTG	3 cut(s)	214, 391, 439
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	5 cut(s)	30, 33, 253, 256, 554
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	34
TspRI	CASTG	3 cut(s)	214, 391, 439
Tth111I	GACNNNGTC	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.